EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000009856 (Gene tree)
Gene ID: -
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 26493 bases
Position: chrAVPZ01000778.1:58271537-58298029
Accession: 25652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000008086	MMR_HSR1	PF01926.23	9.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000011786	LSG1-201	1806	-	ENSCAPP00000008086	601 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000009856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000009856's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000009856	LSG1	73	31.126	ENSCAPG00000006662	GNL1	63	35.780

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000009856	LSG1	100	76.480	ENSG00000041802	LSG1	95	76.274	Homo_sapiens
ENSCAPG00000009856	LSG1	99	66.831	ENSAPOG00000009694	lsg1	95	67.051	Acanthochromis_polyacanthus
ENSCAPG00000009856	LSG1	99	75.719	ENSAMEG00000009343	LSG1	95	75.994	Ailuropoda_melanoleuca
ENSCAPG00000009856	LSG1	99	65.950	ENSACIG00000012406	lsg1	95	65.890	Amphilophus_citrinellus
ENSCAPG00000009856	LSG1	99	66.612	ENSAOCG00000016066	lsg1	95	66.722	Amphiprion_ocellaris
ENSCAPG00000009856	LSG1	99	66.776	ENSAPEG00000003252	lsg1	95	66.886	Amphiprion_percula
ENSCAPG00000009856	LSG1	99	66.172	ENSATEG00000011794	lsg1	95	66.172	Anabas_testudineus
ENSCAPG00000009856	LSG1	99	63.826	ENSACAG00000004222	LSG1	99	63.505	Anolis_carolinensis
ENSCAPG00000009856	LSG1	100	76.960	ENSANAG00000021153	LSG1	95	76.592	Aotus_nancymaae
ENSCAPG00000009856	LSG1	99	65.154	ENSACLG00000000520	lsg1	95	64.830	Astatotilapia_calliptera
ENSCAPG00000009856	LSG1	99	64.401	ENSAMXG00000008271	lsg1	95	64.366	Astyanax_mexicanus
ENSCAPG00000009856	LSG1	100	76.737	ENSBTAG00000008461	LSG1	95	76.726	Bos_taurus
ENSCAPG00000009856	LSG1	67	50.259	WBGene00016907	C53H9.2	78	53.383	Caenorhabditis_elegans
ENSCAPG00000009856	LSG1	100	76.640	ENSCJAG00000013962	LSG1	95	76.274	Callithrix_jacchus
ENSCAPG00000009856	LSG1	99	74.080	ENSCAFG00000013445	LSG1	99	74.682	Canis_familiaris
ENSCAPG00000009856	LSG1	99	74.204	ENSCAFG00020002216	LSG1	99	74.601	Canis_lupus_dingo
ENSCAPG00000009856	LSG1	99	76.509	ENSCHIG00000015769	LSG1	95	76.849	Capra_hircus
ENSCAPG00000009856	LSG1	100	76.997	ENSTSYG00000001447	LSG1	95	76.630	Carlito_syrichta
ENSCAPG00000009856	LSG1	100	75.680	ENSCCAG00000035744	LSG1	95	76.274	Cebus_capucinus
ENSCAPG00000009856	LSG1	100	75.917	ENSCATG00000042060	LSG1	95	75.478	Cercocebus_atys
ENSCAPG00000009856	LSG1	100	77.316	ENSCSAG00000008796	LSG1	87	77.389	Chlorocebus_sabaeus
ENSCAPG00000009856	LSG1	99	67.994	ENSCPBG00000015941	LSG1	79	67.512	Chrysemys_picta_bellii
ENSCAPG00000009856	LSG1	71	58.115	ENSCING00000007079	-	91	58.115	Ciona_intestinalis
ENSCAPG00000009856	LSG1	78	57.870	ENSCSAVG00000002514	-	91	57.870	Ciona_savignyi
ENSCAPG00000009856	LSG1	100	77.280	ENSCANG00000030709	LSG1	95	77.548	Colobus_angolensis_palliatus
ENSCAPG00000009856	LSG1	100	76.206	ENSCGRG00001019846	Lsg1	95	77.010	Cricetulus_griseus_chok1gshd
ENSCAPG00000009856	LSG1	100	76.206	ENSCGRG00000014617	Lsg1	95	77.010	Cricetulus_griseus_crigri
ENSCAPG00000009856	LSG1	99	64.542	ENSCSEG00000008522	lsg1	94	62.903	Cynoglossus_semilaevis
ENSCAPG00000009856	LSG1	99	65.625	ENSCVAG00000002484	lsg1	95	65.677	Cyprinodon_variegatus
ENSCAPG00000009856	LSG1	99	66.776	ENSDARG00000015352	lsg1	95	66.776	Danio_rerio
ENSCAPG00000009856	LSG1	100	76.282	ENSDNOG00000006224	LSG1	95	75.962	Dasypus_novemcinctus
ENSCAPG00000009856	LSG1	99	47.195	FBgn0266284	Ns3	94	47.438	Drosophila_melanogaster
ENSCAPG00000009856	LSG1	87	97.619	ENSETEG00000003888	LSG1	84	97.619	Echinops_telfairi
ENSCAPG00000009856	LSG1	93	55.290	ENSEBUG00000003119	lsg1	85	55.119	Eptatretus_burgeri
ENSCAPG00000009856	LSG1	100	75.000	ENSEASG00005000678	LSG1	95	76.266	Equus_asinus_asinus
ENSCAPG00000009856	LSG1	100	75.835	ENSECAG00000017659	LSG1	95	77.107	Equus_caballus
ENSCAPG00000009856	LSG1	79	80.172	ENSEEUG00000015217	LSG1	75	80.172	Erinaceus_europaeus
ENSCAPG00000009856	LSG1	99	62.397	ENSELUG00000023973	lsg1	95	62.890	Esox_lucius
ENSCAPG00000009856	LSG1	99	76.630	ENSFCAG00000024957	LSG1	95	76.948	Felis_catus
ENSCAPG00000009856	LSG1	97	63.474	ENSFALG00000007210	LSG1	94	63.857	Ficedula_albicollis
ENSCAPG00000009856	LSG1	100	80.844	ENSFDAG00000017373	LSG1	95	81.138	Fukomys_damarensis
ENSCAPG00000009856	LSG1	99	63.371	ENSFHEG00000003680	lsg1	94	64.250	Fundulus_heteroclitus
ENSCAPG00000009856	LSG1	99	60.461	ENSGMOG00000015834	lsg1	85	68.651	Gadus_morhua
ENSCAPG00000009856	LSG1	97	62.684	ENSGALG00000007058	LSG1	82	63.987	Gallus_gallus
ENSCAPG00000009856	LSG1	99	65.347	ENSGAFG00000015831	lsg1	95	65.340	Gambusia_affinis
ENSCAPG00000009856	LSG1	99	64.216	ENSGACG00000009323	lsg1	94	64.404	Gasterosteus_aculeatus
ENSCAPG00000009856	LSG1	100	76.800	ENSGGOG00000000520	LSG1	95	76.911	Gorilla_gorilla
ENSCAPG00000009856	LSG1	99	66.010	ENSHBUG00000005659	lsg1	95	65.681	Haplochromis_burtoni
ENSCAPG00000009856	LSG1	100	77.258	ENSHGLG00000017390	LSG1	95	79.167	Heterocephalus_glaber_female
ENSCAPG00000009856	LSG1	100	77.097	ENSHGLG00100018587	LSG1	95	79.006	Heterocephalus_glaber_male
ENSCAPG00000009856	LSG1	99	63.158	ENSHCOG00000016848	lsg1	95	62.993	Hippocampus_comes
ENSCAPG00000009856	LSG1	99	65.898	ENSIPUG00000008631	lsg1	94	65.789	Ictalurus_punctatus
ENSCAPG00000009856	LSG1	79	68.588	ENSSTOG00000010234	LSG1	93	69.583	Ictidomys_tridecemlineatus
ENSCAPG00000009856	LSG1	100	76.923	ENSJJAG00000015513	Lsg1	95	76.923	Jaculus_jaculus
ENSCAPG00000009856	LSG1	99	63.621	ENSKMAG00000009681	lsg1	94	63.262	Kryptolebias_marmoratus
ENSCAPG00000009856	LSG1	99	64.892	ENSLBEG00000024261	lsg1	94	64.892	Labrus_bergylta
ENSCAPG00000009856	LSG1	99	65.079	ENSLACG00000013399	LSG1	95	65.142	Latimeria_chalumnae
ENSCAPG00000009856	LSG1	99	64.677	ENSLOCG00000004918	lsg1	95	65.323	Lepisosteus_oculatus
ENSCAPG00000009856	LSG1	100	76.423	ENSLAFG00000012919	-	95	76.786	Loxodonta_africana
ENSCAPG00000009856	LSG1	100	77.157	ENSMFAG00000039903	LSG1	95	75.637	Macaca_fascicularis
ENSCAPG00000009856	LSG1	100	77.120	ENSMMUG00000010708	LSG1	95	77.389	Macaca_mulatta
ENSCAPG00000009856	LSG1	100	77.316	ENSMNEG00000031538	LSG1	95	75.796	Macaca_nemestrina
ENSCAPG00000009856	LSG1	100	77.120	ENSMLEG00000041184	LSG1	95	77.389	Mandrillus_leucophaeus
ENSCAPG00000009856	LSG1	99	64.274	ENSMAMG00000000470	lsg1	95	64.368	Mastacembelus_armatus
ENSCAPG00000009856	LSG1	99	65.846	ENSMZEG00005017865	lsg1	95	65.517	Maylandia_zebra
ENSCAPG00000009856	LSG1	93	62.351	ENSMGAG00000007050	LSG1	99	64.068	Meleagris_gallopavo
ENSCAPG00000009856	LSG1	90	74.275	ENSMAUG00000016976	Lsg1	87	75.725	Mesocricetus_auratus
ENSCAPG00000009856	LSG1	100	76.115	ENSMICG00000049087	LSG1	95	75.277	Microcebus_murinus
ENSCAPG00000009856	LSG1	100	75.602	ENSMOCG00000022136	Lsg1	95	77.244	Microtus_ochrogaster
ENSCAPG00000009856	LSG1	86	75.909	ENSMMOG00000008884	lsg1	94	62.895	Mola_mola
ENSCAPG00000009856	LSG1	99	60.772	ENSMODG00000019828	LSG1	95	60.417	Monodelphis_domestica
ENSCAPG00000009856	LSG1	100	76.059	MGP_CAROLIEiJ_G0020648	Lsg1	95	76.499	Mus_caroli
ENSCAPG00000009856	LSG1	100	76.710	ENSMUSG00000022538	Lsg1	95	76.823	Mus_musculus
ENSCAPG00000009856	LSG1	100	76.748	MGP_PahariEiJ_G0016352	Lsg1	95	77.670	Mus_pahari
ENSCAPG00000009856	LSG1	100	76.596	MGP_SPRETEiJ_G0021544	Lsg1	95	77.110	Mus_spretus
ENSCAPG00000009856	LSG1	99	75.680	ENSMPUG00000003734	LSG1	95	76.274	Mustela_putorius_furo
ENSCAPG00000009856	LSG1	99	76.849	ENSMLUG00000012548	LSG1	95	77.170	Myotis_lucifugus
ENSCAPG00000009856	LSG1	100	76.214	ENSNGAG00000021872	Lsg1	95	76.537	Nannospalax_galili
ENSCAPG00000009856	LSG1	100	75.637	ENSNLEG00000008293	LSG1	95	76.752	Nomascus_leucogenys
ENSCAPG00000009856	LSG1	73	70.103	ENSMEUG00000009041	-	84	70.103	Notamacropus_eugenii
ENSCAPG00000009856	LSG1	99	65.147	ENSONIG00000002635	lsg1	95	64.103	Oreochromis_niloticus
ENSCAPG00000009856	LSG1	99	69.516	ENSOANG00000012742	LSG1	99	69.355	Ornithorhynchus_anatinus
ENSCAPG00000009856	LSG1	100	77.831	ENSOCUG00000004817	LSG1	95	77.742	Oryctolagus_cuniculus
ENSCAPG00000009856	LSG1	99	62.914	ENSORLG00000007695	lsg1	94	63.394	Oryzias_latipes
ENSCAPG00000009856	LSG1	99	62.336	ENSORLG00020016286	lsg1	94	62.729	Oryzias_latipes_hni
ENSCAPG00000009856	LSG1	99	62.748	ENSORLG00015012025	lsg1	94	63.062	Oryzias_latipes_hsok
ENSCAPG00000009856	LSG1	99	62.645	ENSOMEG00000022379	lsg1	94	62.458	Oryzias_melastigma
ENSCAPG00000009856	LSG1	100	76.153	ENSOGAG00000003475	LSG1	95	76.424	Otolemur_garnettii
ENSCAPG00000009856	LSG1	99	75.199	ENSOARG00000020403	LSG1	95	76.726	Ovis_aries
ENSCAPG00000009856	LSG1	100	77.070	ENSPPAG00000029271	LSG1	95	76.592	Pan_paniscus
ENSCAPG00000009856	LSG1	99	75.943	ENSPPRG00000010281	LSG1	95	76.258	Panthera_pardus
ENSCAPG00000009856	LSG1	99	76.948	ENSPTIG00000010789	LSG1	95	77.266	Panthera_tigris_altaica
ENSCAPG00000009856	LSG1	100	77.070	ENSPTRG00000015760	LSG1	95	76.592	Pan_troglodytes
ENSCAPG00000009856	LSG1	100	77.636	ENSPANG00000018249	LSG1	95	76.115	Papio_anubis
ENSCAPG00000009856	LSG1	100	64.368	ENSPKIG00000002895	lsg1	95	63.993	Paramormyrops_kingsleyae
ENSCAPG00000009856	LSG1	99	65.457	ENSPSIG00000009821	LSG1	99	65.300	Pelodiscus_sinensis
ENSCAPG00000009856	LSG1	99	63.889	ENSPMGG00000000931	lsg1	99	63.036	Periophthalmus_magnuspinnatus
ENSCAPG00000009856	LSG1	100	77.653	ENSPEMG00000012082	-	95	77.331	Peromyscus_maniculatus_bairdii
ENSCAPG00000009856	LSG1	99	58.165	ENSPMAG00000007451	lsg1	95	58.307	Petromyzon_marinus
ENSCAPG00000009856	LSG1	99	65.057	ENSPCIG00000013890	LSG1	77	64.598	Phascolarctos_cinereus
ENSCAPG00000009856	LSG1	99	65.517	ENSPFOG00000021882	lsg1	95	65.517	Poecilia_formosa
ENSCAPG00000009856	LSG1	99	64.860	ENSPLAG00000019536	lsg1	95	64.860	Poecilia_latipinna
ENSCAPG00000009856	LSG1	99	64.812	ENSPMEG00000017281	lsg1	95	64.812	Poecilia_mexicana
ENSCAPG00000009856	LSG1	99	55.806	ENSPREG00000006048	lsg1	94	55.395	Poecilia_reticulata
ENSCAPG00000009856	LSG1	92	75.563	ENSPPYG00000014425	LSG1	95	74.653	Pongo_abelii
ENSCAPG00000009856	LSG1	89	95.238	ENSPCAG00000005511	LSG1	76	95.238	Procavia_capensis
ENSCAPG00000009856	LSG1	100	76.387	ENSPCOG00000012360	LSG1	95	76.341	Propithecus_coquereli
ENSCAPG00000009856	LSG1	99	64.992	ENSPNYG00000021994	lsg1	95	64.668	Pundamilia_nyererei
ENSCAPG00000009856	LSG1	99	67.099	ENSPNAG00000015533	lsg1	95	66.775	Pygocentrus_nattereri
ENSCAPG00000009856	LSG1	100	76.640	ENSRNOG00000001727	Lsg1	95	77.389	Rattus_norvegicus
ENSCAPG00000009856	LSG1	100	76.603	ENSRBIG00000029053	LSG1	95	76.236	Rhinopithecus_bieti
ENSCAPG00000009856	LSG1	100	76.603	ENSRROG00000037702	LSG1	95	76.236	Rhinopithecus_roxellana
ENSCAPG00000009856	LSG1	82	41.326	YGL099W	LSG1	64	51.445	Saccharomyces_cerevisiae
ENSCAPG00000009856	LSG1	100	76.960	ENSSBOG00000034938	LSG1	95	77.707	Saimiri_boliviensis_boliviensis
ENSCAPG00000009856	LSG1	81	64.952	ENSSHAG00000003487	LSG1	99	64.381	Sarcophilus_harrisii
ENSCAPG00000009856	LSG1	99	65.846	ENSSFOG00015008955	lsg1	95	65.410	Scleropages_formosus
ENSCAPG00000009856	LSG1	99	66.230	ENSSDUG00000004622	lsg1	95	66.066	Seriola_dumerili
ENSCAPG00000009856	LSG1	99	66.722	ENSSLDG00000010869	lsg1	95	65.296	Seriola_lalandi_dorsalis
ENSCAPG00000009856	LSG1	75	85.217	ENSSARG00000012981	LSG1	72	85.217	Sorex_araneus
ENSCAPG00000009856	LSG1	99	67.143	ENSSPUG00000016347	LSG1	95	66.667	Sphenodon_punctatus
ENSCAPG00000009856	LSG1	99	66.116	ENSSPAG00000005508	lsg1	95	65.894	Stegastes_partitus
ENSCAPG00000009856	LSG1	99	75.367	ENSSSCG00000011827	LSG1	95	75.162	Sus_scrofa
ENSCAPG00000009856	LSG1	93	61.409	ENSTGUG00000009068	LSG1	99	61.873	Taeniopygia_guttata
ENSCAPG00000009856	LSG1	99	60.940	ENSTRUG00000017380	lsg1	94	61.102	Takifugu_rubripes
ENSCAPG00000009856	LSG1	99	64.228	ENSTNIG00000015570	lsg1	95	65.289	Tetraodon_nigroviridis
ENSCAPG00000009856	LSG1	99	68.051	ENSTTRG00000000559	LSG1	95	67.412	Tursiops_truncatus
ENSCAPG00000009856	LSG1	99	76.000	ENSUAMG00000012454	LSG1	95	76.752	Ursus_americanus
ENSCAPG00000009856	LSG1	99	76.000	ENSUMAG00000000855	LSG1	95	76.752	Ursus_maritimus
ENSCAPG00000009856	LSG1	99	71.019	ENSVPAG00000012400	LSG1	99	70.860	Vicugna_pacos
ENSCAPG00000009856	LSG1	99	73.600	ENSVVUG00000008956	LSG1	97	74.204	Vulpes_vulpes
ENSCAPG00000009856	LSG1	99	65.640	ENSXETG00000003451	lsg1	95	66.225	Xenopus_tropicalis
ENSCAPG00000009856	LSG1	99	64.754	ENSXCOG00000003239	lsg1	95	65.008	Xiphophorus_couchianus
ENSCAPG00000009856	LSG1	99	64.474	ENSXMAG00000005536	lsg1	95	64.182	Xiphophorus_maculatus