EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000010132 (Gene tree)
Gene ID: -
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 66787 bases
Position: chrAVPZ01000311.1:4703867-4770653
Accession: 17264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000008479	RNA_pol_Rpb1_5	PF04998.17	5.9e-91	1	1
ENSCAPP00000008473	RNA_pol_Rpb1_5	PF04998.17	6.2e-91	1	1
ENSCAPP00000008479	RNA_pol_Rpb1_4	PF05000.17	2.3e-25	1	1
ENSCAPP00000008473	RNA_pol_Rpb1_4	PF05000.17	2.3e-25	1	1
ENSCAPP00000008479	RNA_pol_Rpb1_2	PF00623.20	7.9e-70	1	1
ENSCAPP00000008473	RNA_pol_Rpb1_2	PF00623.20	8.1e-70	1	1
ENSCAPP00000008479	RNA_pol_Rpb1_3	PF04983.18	7.3e-37	1	1
ENSCAPP00000008473	RNA_pol_Rpb1_3	PF04983.18	7.5e-37	1	1
ENSCAPP00000008473	RNA_pol_Rpb1_1	PF04997.12	4.1e-13	1	1
ENSCAPP00000008479	RNA_pol_Rpb1_1	PF04997.12	1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000012185	POLR1A-202	4788	-	ENSCAPP00000008479	1595 (aa)	-	-
ENSCAPT00000012178	POLR1A-201	4857	-	ENSCAPP00000008473	1618 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000010132's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000010132's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000010132	POLR1A	67	31.928	ENSCAPG00000016031	POLR3A	71	31.928

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000010132	POLR1A	100	83.931	ENSG00000068654	POLR1A	97	83.840	Homo_sapiens
ENSCAPG00000010132	POLR1A	70	66.961	ENSAPOG00000017945	polr1a	99	66.190	Acanthochromis_polyacanthus
ENSCAPG00000010132	POLR1A	100	84.510	ENSAMEG00000005807	POLR1A	95	89.355	Ailuropoda_melanoleuca
ENSCAPG00000010132	POLR1A	99	60.768	ENSACIG00000022147	polr1a	97	60.584	Amphilophus_citrinellus
ENSCAPG00000010132	POLR1A	99	63.003	ENSAOCG00000017336	polr1a	97	64.553	Amphiprion_ocellaris
ENSCAPG00000010132	POLR1A	90	76.596	ENSAPEG00000016105	polr1a	93	76.596	Amphiprion_percula
ENSCAPG00000010132	POLR1A	99	63.544	ENSATEG00000016773	polr1a	97	62.426	Anabas_testudineus
ENSCAPG00000010132	POLR1A	88	68.222	ENSAPLG00000013871	POLR1A	99	68.566	Anas_platyrhynchos
ENSCAPG00000010132	POLR1A	100	65.552	ENSACAG00000012141	POLR1A	97	65.109	Anolis_carolinensis
ENSCAPG00000010132	POLR1A	100	83.154	ENSANAG00000033927	POLR1A	97	83.602	Aotus_nancymaae
ENSCAPG00000010132	POLR1A	100	60.192	ENSACLG00000020541	polr1a	97	59.568	Astatotilapia_calliptera
ENSCAPG00000010132	POLR1A	100	83.572	ENSBTAG00000006481	POLR1A	97	83.761	Bos_taurus
ENSCAPG00000010132	POLR1A	98	39.369	WBGene00012999	rpoa-1	77	56.522	Caenorhabditis_elegans
ENSCAPG00000010132	POLR1A	100	82.616	ENSCJAG00000019547	POLR1A	97	82.946	Callithrix_jacchus
ENSCAPG00000010132	POLR1A	100	84.979	ENSCAFG00000007613	POLR1A	97	85.125	Canis_familiaris
ENSCAPG00000010132	POLR1A	100	84.896	ENSCAFG00020014752	POLR1A	93	90.022	Canis_lupus_dingo
ENSCAPG00000010132	POLR1A	100	82.765	ENSCHIG00000018204	POLR1A	97	82.645	Capra_hircus
ENSCAPG00000010132	POLR1A	100	82.286	ENSTSYG00000002761	POLR1A	97	82.019	Carlito_syrichta
ENSCAPG00000010132	POLR1A	100	94.354	ENSCPOG00000012350	POLR1A	97	94.365	Cavia_porcellus
ENSCAPG00000010132	POLR1A	100	83.453	ENSCCAG00000019839	POLR1A	97	83.840	Cebus_capucinus
ENSCAPG00000010132	POLR1A	100	84.528	ENSCATG00000029786	POLR1A	97	84.377	Cercocebus_atys
ENSCAPG00000010132	POLR1A	100	89.480	ENSCLAG00000005187	POLR1A	97	89.480	Chinchilla_lanigera
ENSCAPG00000010132	POLR1A	100	83.871	ENSCSAG00000016251	POLR1A	97	84.198	Chlorocebus_sabaeus
ENSCAPG00000010132	POLR1A	99	70.652	ENSCPBG00000001115	POLR1A	97	70.652	Chrysemys_picta_bellii
ENSCAPG00000010132	POLR1A	90	54.511	ENSCSAVG00000007184	-	95	49.083	Ciona_savignyi
ENSCAPG00000010132	POLR1A	100	81.134	ENSCANG00000031785	POLR1A	97	81.287	Colobus_angolensis_palliatus
ENSCAPG00000010132	POLR1A	96	85.763	ENSCGRG00001006651	Polr1a	97	85.763	Cricetulus_griseus_chok1gshd
ENSCAPG00000010132	POLR1A	61	83.220	ENSCGRG00000010834	Polr1a	100	83.220	Cricetulus_griseus_crigri
ENSCAPG00000010132	POLR1A	99	59.411	ENSCSEG00000020190	polr1a	97	59.211	Cynoglossus_semilaevis
ENSCAPG00000010132	POLR1A	99	61.561	ENSCVAG00000020941	polr1a	97	61.065	Cyprinodon_variegatus
ENSCAPG00000010132	POLR1A	100	64.402	ENSDARG00000098375	polr1a	97	64.149	Danio_rerio
ENSCAPG00000010132	POLR1A	100	78.162	ENSDNOG00000010829	POLR1A	97	78.162	Dasypus_novemcinctus
ENSCAPG00000010132	POLR1A	100	86.219	ENSDORG00000008298	Polr1a	97	86.040	Dipodomys_ordii
ENSCAPG00000010132	POLR1A	92	50.909	FBgn0019938	RpI1	97	43.174	Drosophila_melanogaster
ENSCAPG00000010132	POLR1A	70	93.750	ENSETEG00000000412	-	69	93.750	Echinops_telfairi
ENSCAPG00000010132	POLR1A	92	46.457	ENSEBUG00000005667	-	99	46.084	Eptatretus_burgeri
ENSCAPG00000010132	POLR1A	100	85.125	ENSEASG00005001625	POLR1A	97	85.305	Equus_asinus_asinus
ENSCAPG00000010132	POLR1A	100	85.066	ENSECAG00000010092	POLR1A	97	89.967	Equus_caballus
ENSCAPG00000010132	POLR1A	100	85.066	ENSECAG00000036306	-	97	89.967	Equus_caballus
ENSCAPG00000010132	POLR1A	100	85.066	ENSECAG00000030510	-	97	89.967	Equus_caballus
ENSCAPG00000010132	POLR1A	83	97.826	ENSEEUG00000000676	POLR1A	81	97.619	Erinaceus_europaeus
ENSCAPG00000010132	POLR1A	100	64.264	ENSELUG00000012769	polr1a	96	64.046	Esox_lucius
ENSCAPG00000010132	POLR1A	100	84.450	ENSFCAG00000008966	POLR1A	97	84.597	Felis_catus
ENSCAPG00000010132	POLR1A	99	67.546	ENSFALG00000010082	POLR1A	98	67.546	Ficedula_albicollis
ENSCAPG00000010132	POLR1A	100	88.309	ENSFDAG00000013726	POLR1A	97	88.390	Fukomys_damarensis
ENSCAPG00000010132	POLR1A	99	59.915	ENSFHEG00000005996	polr1a	97	59.494	Fundulus_heteroclitus
ENSCAPG00000010132	POLR1A	100	57.402	ENSGMOG00000002230	polr1a	97	57.462	Gadus_morhua
ENSCAPG00000010132	POLR1A	90	65.410	ENSGALG00000038160	-	97	65.192	Gallus_gallus
ENSCAPG00000010132	POLR1A	99	62.154	ENSGAFG00000015266	polr1a	97	61.779	Gambusia_affinis
ENSCAPG00000010132	POLR1A	100	61.507	ENSGACG00000018791	polr1a	97	60.918	Gasterosteus_aculeatus
ENSCAPG00000010132	POLR1A	92	71.822	ENSGAGG00000004984	-	95	79.416	Gopherus_agassizii
ENSCAPG00000010132	POLR1A	100	83.990	ENSGGOG00000001788	POLR1A	97	83.900	Gorilla_gorilla
ENSCAPG00000010132	POLR1A	92	65.177	ENSHBUG00000020021	polr1a	94	65.008	Haplochromis_burtoni
ENSCAPG00000010132	POLR1A	100	88.842	ENSHGLG00000006334	POLR1A	97	88.842	Heterocephalus_glaber_female
ENSCAPG00000010132	POLR1A	100	88.577	ENSHGLG00100006614	POLR1A	97	88.577	Heterocephalus_glaber_male
ENSCAPG00000010132	POLR1A	99	59.807	ENSHCOG00000003345	polr1a	97	59.581	Hippocampus_comes
ENSCAPG00000010132	POLR1A	100	62.740	ENSIPUG00000013174	polr1a	97	62.232	Ictalurus_punctatus
ENSCAPG00000010132	POLR1A	100	83.383	ENSSTOG00000012580	POLR1A	97	83.303	Ictidomys_tridecemlineatus
ENSCAPG00000010132	POLR1A	100	84.781	ENSJJAG00000013113	Polr1a	97	84.781	Jaculus_jaculus
ENSCAPG00000010132	POLR1A	99	62.831	ENSKMAG00000007399	polr1a	97	62.349	Kryptolebias_marmoratus
ENSCAPG00000010132	POLR1A	95	65.702	ENSLBEG00000015401	polr1a	96	64.871	Labrus_bergylta
ENSCAPG00000010132	POLR1A	54	75.258	ENSLACG00000003218	polr1a	95	74.914	Latimeria_chalumnae
ENSCAPG00000010132	POLR1A	100	67.876	ENSLOCG00000010881	polr1a	97	68.114	Lepisosteus_oculatus
ENSCAPG00000010132	POLR1A	100	82.896	ENSLAFG00000014948	POLR1A	97	82.718	Loxodonta_africana
ENSCAPG00000010132	POLR1A	100	83.990	ENSMFAG00000046097	POLR1A	97	84.317	Macaca_fascicularis
ENSCAPG00000010132	POLR1A	100	83.871	ENSMMUG00000015815	POLR1A	97	84.198	Macaca_mulatta
ENSCAPG00000010132	POLR1A	100	83.990	ENSMNEG00000043313	POLR1A	97	84.317	Macaca_nemestrina
ENSCAPG00000010132	POLR1A	100	83.393	ENSMLEG00000042428	POLR1A	97	83.721	Mandrillus_leucophaeus
ENSCAPG00000010132	POLR1A	99	63.708	ENSMAMG00000016565	polr1a	97	63.708	Mastacembelus_armatus
ENSCAPG00000010132	POLR1A	100	63.063	ENSMZEG00005004915	polr1a	97	62.493	Maylandia_zebra
ENSCAPG00000010132	POLR1A	99	65.793	ENSMGAG00000013111	POLR1A	97	65.793	Meleagris_gallopavo
ENSCAPG00000010132	POLR1A	94	83.820	ENSMAUG00000008497	Polr1a	100	83.820	Mesocricetus_auratus
ENSCAPG00000010132	POLR1A	100	84.119	ENSMICG00000000757	POLR1A	97	84.207	Microcebus_murinus
ENSCAPG00000010132	POLR1A	100	84.211	ENSMOCG00000000122	Polr1a	97	83.971	Microtus_ochrogaster
ENSCAPG00000010132	POLR1A	99	62.432	ENSMMOG00000010216	polr1a	97	62.086	Mola_mola
ENSCAPG00000010132	POLR1A	100	70.678	ENSMODG00000009335	POLR1A	97	70.076	Monodelphis_domestica
ENSCAPG00000010132	POLR1A	99	62.718	ENSMALG00000013363	polr1a	100	61.491	Monopterus_albus
ENSCAPG00000010132	POLR1A	100	82.307	MGP_CAROLIEiJ_G0028494	Polr1a	97	82.247	Mus_caroli
ENSCAPG00000010132	POLR1A	100	82.666	ENSMUSG00000049553	Polr1a	97	82.497	Mus_musculus
ENSCAPG00000010132	POLR1A	100	83.373	MGP_PahariEiJ_G0022230	Polr1a	97	83.204	Mus_pahari
ENSCAPG00000010132	POLR1A	100	81.151	MGP_SPRETEiJ_G0029499	Polr1a	97	81.525	Mus_spretus
ENSCAPG00000010132	POLR1A	100	84.868	ENSMPUG00000009135	POLR1A	97	84.868	Mustela_putorius_furo
ENSCAPG00000010132	POLR1A	100	83.085	ENSMLUG00000015723	POLR1A	97	83.175	Myotis_lucifugus
ENSCAPG00000010132	POLR1A	100	84.519	ENSNGAG00000017907	Polr1a	97	84.340	Nannospalax_galili
ENSCAPG00000010132	POLR1A	100	63.139	ENSNBRG00000000519	polr1a	97	62.552	Neolamprologus_brichardi
ENSCAPG00000010132	POLR1A	100	81.986	ENSNLEG00000002264	POLR1A	97	82.136	Nomascus_leucogenys
ENSCAPG00000010132	POLR1A	77	91.339	ENSMEUG00000011665	-	73	91.339	Notamacropus_eugenii
ENSCAPG00000010132	POLR1A	99	77.358	ENSOPRG00000008269	POLR1A	97	77.400	Ochotona_princeps
ENSCAPG00000010132	POLR1A	100	89.808	ENSODEG00000003542	POLR1A	97	89.826	Octodon_degus
ENSCAPG00000010132	POLR1A	100	63.265	ENSONIG00000015895	polr1a	97	62.270	Oreochromis_niloticus
ENSCAPG00000010132	POLR1A	100	84.952	ENSOCUG00000010138	POLR1A	97	85.278	Oryctolagus_cuniculus
ENSCAPG00000010132	POLR1A	99	62.455	ENSORLG00000008753	polr1a	97	62.312	Oryzias_latipes
ENSCAPG00000010132	POLR1A	99	62.362	ENSORLG00020020726	polr1a	97	61.375	Oryzias_latipes_hni
ENSCAPG00000010132	POLR1A	95	86.667	ENSORLG00015016071	polr1a	95	87.805	Oryzias_latipes_hsok
ENSCAPG00000010132	POLR1A	100	83.990	ENSOGAG00000004031	POLR1A	97	83.900	Otolemur_garnettii
ENSCAPG00000010132	POLR1A	100	83.632	ENSOARG00000020601	POLR1A	97	83.701	Ovis_aries
ENSCAPG00000010132	POLR1A	100	83.990	ENSPPAG00000042450	POLR1A	97	83.900	Pan_paniscus
ENSCAPG00000010132	POLR1A	100	84.510	ENSPPRG00000006702	POLR1A	97	84.657	Panthera_pardus
ENSCAPG00000010132	POLR1A	100	84.029	ENSPTIG00000018783	POLR1A	97	84.176	Panthera_tigris_altaica
ENSCAPG00000010132	POLR1A	100	83.871	ENSPTRG00000012147	POLR1A	97	83.840	Pan_troglodytes
ENSCAPG00000010132	POLR1A	100	84.409	ENSPANG00000025908	POLR1A	97	84.258	Papio_anubis
ENSCAPG00000010132	POLR1A	92	78.723	ENSPKIG00000005468	polr1a	94	78.723	Paramormyrops_kingsleyae
ENSCAPG00000010132	POLR1A	64	67.500	ENSPSIG00000009321	-	99	67.407	Pelodiscus_sinensis
ENSCAPG00000010132	POLR1A	57	68.102	ENSPMGG00000009718	polr1a	92	68.102	Periophthalmus_magnuspinnatus
ENSCAPG00000010132	POLR1A	100	84.758	ENSPEMG00000022224	Polr1a	97	84.519	Peromyscus_maniculatus_bairdii
ENSCAPG00000010132	POLR1A	95	74.969	ENSPCIG00000004222	POLR1A	97	74.329	Phascolarctos_cinereus
ENSCAPG00000010132	POLR1A	99	61.968	ENSPFOG00000005025	polr1a	97	61.788	Poecilia_formosa
ENSCAPG00000010132	POLR1A	99	62.515	ENSPLAG00000021389	polr1a	97	62.214	Poecilia_latipinna
ENSCAPG00000010132	POLR1A	99	61.034	ENSPMEG00000006463	polr1a	97	60.706	Poecilia_mexicana
ENSCAPG00000010132	POLR1A	99	62.290	ENSPREG00000002389	polr1a	97	61.930	Poecilia_reticulata
ENSCAPG00000010132	POLR1A	100	83.453	ENSPPYG00000012217	POLR1A	97	83.542	Pongo_abelii
ENSCAPG00000010132	POLR1A	93	84.112	ENSPCAG00000011582	POLR1A	91	83.962	Procavia_capensis
ENSCAPG00000010132	POLR1A	100	84.537	ENSPCOG00000026987	POLR1A	97	84.863	Propithecus_coquereli
ENSCAPG00000010132	POLR1A	93	90.306	ENSPVAG00000012674	POLR1A	93	81.296	Pteropus_vampyrus
ENSCAPG00000010132	POLR1A	100	63.123	ENSPNYG00000000026	polr1a	97	62.493	Pundamilia_nyererei
ENSCAPG00000010132	POLR1A	100	64.149	ENSPNAG00000019223	polr1a	97	63.947	Pygocentrus_nattereri
ENSCAPG00000010132	POLR1A	100	84.031	ENSRNOG00000009545	Polr1a	97	84.031	Rattus_norvegicus
ENSCAPG00000010132	POLR1A	100	83.333	ENSRBIG00000028335	POLR1A	97	83.661	Rhinopithecus_bieti
ENSCAPG00000010132	POLR1A	100	83.274	ENSRROG00000031473	POLR1A	100	81.182	Rhinopithecus_roxellana
ENSCAPG00000010132	POLR1A	99	35.760	YOR341W	RPA190	97	35.443	Saccharomyces_cerevisiae
ENSCAPG00000010132	POLR1A	100	82.855	ENSSBOG00000030262	POLR1A	97	83.234	Saimiri_boliviensis_boliviensis
ENSCAPG00000010132	POLR1A	100	68.998	ENSSHAG00000014739	POLR1A	97	68.939	Sarcophilus_harrisii
ENSCAPG00000010132	POLR1A	100	64.940	ENSSFOG00015019716	polr1a	97	65.000	Scleropages_formosus
ENSCAPG00000010132	POLR1A	99	62.574	ENSSMAG00000014342	polr1a	97	62.081	Scophthalmus_maximus
ENSCAPG00000010132	POLR1A	99	63.522	ENSSDUG00000014631	polr1a	97	63.375	Seriola_dumerili
ENSCAPG00000010132	POLR1A	99	61.988	ENSSLDG00000024095	polr1a	97	64.424	Seriola_lalandi_dorsalis
ENSCAPG00000010132	POLR1A	72	95.745	ENSSARG00000003136	-	74	95.745	Sorex_araneus
ENSCAPG00000010132	POLR1A	94	76.923	ENSSPUG00000004215	POLR1A	95	76.923	Sphenodon_punctatus
ENSCAPG00000010132	POLR1A	64	71.836	ENSSPAG00000016341	polr1a	90	71.836	Stegastes_partitus
ENSCAPG00000010132	POLR1A	82	83.852	ENSSSCG00000008226	POLR1A	96	83.805	Sus_scrofa
ENSCAPG00000010132	POLR1A	100	67.445	ENSTGUG00000010704	POLR1A	99	66.825	Taeniopygia_guttata
ENSCAPG00000010132	POLR1A	99	60.981	ENSTRUG00000002210	polr1a	94	65.431	Takifugu_rubripes
ENSCAPG00000010132	POLR1A	99	56.789	ENSTNIG00000010116	polr1a	97	56.789	Tetraodon_nigroviridis
ENSCAPG00000010132	POLR1A	72	95.575	ENSTBEG00000008646	POLR1A	71	95.575	Tupaia_belangeri
ENSCAPG00000010132	POLR1A	100	80.323	ENSTTRG00000008597	POLR1A	97	80.144	Tursiops_truncatus
ENSCAPG00000010132	POLR1A	70	84.335	ENSUAMG00000012158	-	94	84.335	Ursus_americanus
ENSCAPG00000010132	POLR1A	100	84.031	ENSUMAG00000006700	POLR1A	94	89.274	Ursus_maritimus
ENSCAPG00000010132	POLR1A	100	84.740	ENSVVUG00000001245	POLR1A	97	84.886	Vulpes_vulpes
ENSCAPG00000010132	POLR1A	100	63.653	ENSXETG00000001952	polr1a	97	63.712	Xenopus_tropicalis
ENSCAPG00000010132	POLR1A	99	62.560	ENSXMAG00000004032	polr1a	97	62.139	Xiphophorus_maculatus