EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000010677 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 384952 bases
Position: chrAVPZ01000023.1:48346990-48731941
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000009194	TUDOR	PF00567.24	2.1e-20	1	1
ENSCAPP00000009197	TUDOR	PF00567.24	1.4e-19	1	1
ENSCAPP00000009197	SNase	PF00565.17	1.5e-54	1	4
ENSCAPP00000009197	SNase	PF00565.17	1.5e-54	2	4
ENSCAPP00000009197	SNase	PF00565.17	1.5e-54	3	4
ENSCAPP00000009197	SNase	PF00565.17	1.5e-54	4	4
ENSCAPP00000009194	SNase	PF00565.17	2.8e-54	1	4
ENSCAPP00000009194	SNase	PF00565.17	2.8e-54	2	4
ENSCAPP00000009194	SNase	PF00565.17	2.8e-54	3	4
ENSCAPP00000009194	SNase	PF00565.17	2.8e-54	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000012907	SND1-201	2538	-	ENSCAPP00000009194	845 (aa)	-	-
ENSCAPT00000012910	SND1-202	2439	-	ENSCAPP00000009197	812 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000010677's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000010677's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000010677	SND1	98	84.598	ENSG00000197157	SND1	99	84.556	Homo_sapiens
ENSCAPG00000010677	SND1	97	74.025	ENSAPOG00000017599	snd1	97	74.662	Acanthochromis_polyacanthus
ENSCAPG00000010677	SND1	98	84.590	ENSAMEG00000004664	SND1	93	84.590	Ailuropoda_melanoleuca
ENSCAPG00000010677	SND1	97	76.620	ENSACIG00000003551	snd1	97	76.620	Amphilophus_citrinellus
ENSCAPG00000010677	SND1	97	73.913	ENSAOCG00000014166	snd1	97	74.550	Amphiprion_ocellaris
ENSCAPG00000010677	SND1	97	73.913	ENSAPEG00000007067	snd1	97	74.550	Amphiprion_percula
ENSCAPG00000010677	SND1	95	73.938	ENSATEG00000018475	snd1	87	73.938	Anabas_testudineus
ENSCAPG00000010677	SND1	97	86.728	ENSANAG00000034463	SND1	99	86.728	Aotus_nancymaae
ENSCAPG00000010677	SND1	98	73.192	ENSACLG00000022897	snd1	98	73.192	Astatotilapia_calliptera
ENSCAPG00000010677	SND1	98	73.807	ENSAMXG00000016318	snd1	98	73.807	Astyanax_mexicanus
ENSCAPG00000010677	SND1	98	85.268	ENSBTAG00000010692	SND1	99	85.222	Bos_taurus
ENSCAPG00000010677	SND1	97	42.904	WBGene00006626	tsn-1	98	43.013	Caenorhabditis_elegans
ENSCAPG00000010677	SND1	98	84.821	ENSCJAG00000017668	SND1	99	85.553	Callithrix_jacchus
ENSCAPG00000010677	SND1	98	84.444	ENSCAFG00000001700	SND1	99	84.778	Canis_familiaris
ENSCAPG00000010677	SND1	98	84.444	ENSCAFG00020021639	SND1	99	84.778	Canis_lupus_dingo
ENSCAPG00000010677	SND1	98	85.827	ENSCHIG00000023390	SND1	99	85.827	Capra_hircus
ENSCAPG00000010677	SND1	78	86.316	ENSTSYG00000004979	SND1	96	86.316	Carlito_syrichta
ENSCAPG00000010677	SND1	98	86.496	ENSCPOG00000006251	SND1	99	86.444	Cavia_porcellus
ENSCAPG00000010677	SND1	97	86.957	ENSCCAG00000036847	SND1	99	86.957	Cebus_capucinus
ENSCAPG00000010677	SND1	98	84.710	ENSCATG00000035214	SND1	99	85.440	Cercocebus_atys
ENSCAPG00000010677	SND1	98	85.206	ENSCLAG00000011796	SND1	99	85.222	Chinchilla_lanigera
ENSCAPG00000010677	SND1	98	84.710	ENSCSAG00000010182	SND1	99	84.667	Chlorocebus_sabaeus
ENSCAPG00000010677	SND1	81	85.000	ENSCHOG00000002218	SND1	86	85.294	Choloepus_hoffmanni
ENSCAPG00000010677	SND1	98	79.689	ENSCPBG00000018094	SND1	99	80.022	Chrysemys_picta_bellii
ENSCAPG00000010677	SND1	97	51.050	ENSCING00000000524	-	97	51.276	Ciona_intestinalis
ENSCAPG00000010677	SND1	97	52.626	ENSCSAVG00000008807	-	97	52.626	Ciona_savignyi
ENSCAPG00000010677	SND1	98	84.710	ENSCANG00000035119	SND1	99	84.667	Colobus_angolensis_palliatus
ENSCAPG00000010677	SND1	98	84.263	ENSCGRG00001022514	Snd1	98	84.263	Cricetulus_griseus_chok1gshd
ENSCAPG00000010677	SND1	98	84.797	ENSCGRG00000012277	Snd1	99	84.797	Cricetulus_griseus_crigri
ENSCAPG00000010677	SND1	97	73.761	ENSCSEG00000008661	snd1	97	73.761	Cynoglossus_semilaevis
ENSCAPG00000010677	SND1	97	75.113	ENSCVAG00000010316	snd1	100	73.394	Cyprinodon_variegatus
ENSCAPG00000010677	SND1	100	73.005	ENSDARG00000006766	snd1	100	73.005	Danio_rerio
ENSCAPG00000010677	SND1	97	82.545	ENSDNOG00000006795	SND1	99	82.545	Dasypus_novemcinctus
ENSCAPG00000010677	SND1	98	84.933	ENSDORG00000000336	Snd1	99	84.889	Dipodomys_ordii
ENSCAPG00000010677	SND1	97	44.967	FBgn0035121	Tudor-SN	97	44.967	Drosophila_melanogaster
ENSCAPG00000010677	SND1	89	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSCAPG00000010677	SND1	58	59.569	ENSEBUG00000014201	-	84	61.749	Eptatretus_burgeri
ENSCAPG00000010677	SND1	98	83.224	ENSEASG00005008513	SND1	99	83.188	Equus_asinus_asinus
ENSCAPG00000010677	SND1	98	85.251	ENSECAG00000011451	SND1	99	85.206	Equus_caballus
ENSCAPG00000010677	SND1	98	84.111	ENSEEUG00000014737	SND1	90	84.048	Erinaceus_europaeus
ENSCAPG00000010677	SND1	99	71.397	ENSELUG00000001805	snd1	96	71.397	Esox_lucius
ENSCAPG00000010677	SND1	98	86.766	ENSFCAG00000008289	SND1	99	86.766	Felis_catus
ENSCAPG00000010677	SND1	98	85.156	ENSFDAG00000015881	SND1	99	85.111	Fukomys_damarensis
ENSCAPG00000010677	SND1	97	72.907	ENSFHEG00000004093	snd1	96	74.061	Fundulus_heteroclitus
ENSCAPG00000010677	SND1	56	90.323	ENSGMOG00000018932	snd1	55	90.323	Gadus_morhua
ENSCAPG00000010677	SND1	97	74.247	ENSGAFG00000008421	snd1	99	74.887	Gambusia_affinis
ENSCAPG00000010677	SND1	97	48.322	ENSGACG00000019793	snd1	97	47.305	Gasterosteus_aculeatus
ENSCAPG00000010677	SND1	98	84.710	ENSGGOG00000009614	SND1	99	85.440	Gorilla_gorilla
ENSCAPG00000010677	SND1	99	72.418	ENSHBUG00000019135	snd1	99	72.418	Haplochromis_burtoni
ENSCAPG00000010677	SND1	98	84.933	ENSHGLG00000003618	SND1	99	84.889	Heterocephalus_glaber_female
ENSCAPG00000010677	SND1	98	84.889	ENSHGLG00100012449	SND1	99	84.889	Heterocephalus_glaber_male
ENSCAPG00000010677	SND1	97	73.761	ENSHCOG00000005266	snd1	97	73.761	Hippocampus_comes
ENSCAPG00000010677	SND1	100	72.380	ENSIPUG00000013279	snd1	100	72.380	Ictalurus_punctatus
ENSCAPG00000010677	SND1	98	85.045	ENSSTOG00000002140	SND1	99	85.000	Ictidomys_tridecemlineatus
ENSCAPG00000010677	SND1	98	85.045	ENSJJAG00000009561	Snd1	99	85.000	Jaculus_jaculus
ENSCAPG00000010677	SND1	97	74.136	ENSKMAG00000016997	snd1	97	74.775	Kryptolebias_marmoratus
ENSCAPG00000010677	SND1	99	72.039	ENSLBEG00000013563	snd1	99	72.039	Labrus_bergylta
ENSCAPG00000010677	SND1	97	74.665	ENSLOCG00000015537	snd1	100	73.319	Lepisosteus_oculatus
ENSCAPG00000010677	SND1	98	84.333	ENSLAFG00000009696	SND1	99	84.333	Loxodonta_africana
ENSCAPG00000010677	SND1	98	84.710	ENSMFAG00000038114	SND1	99	85.440	Macaca_fascicularis
ENSCAPG00000010677	SND1	98	84.710	ENSMMUG00000015432	SND1	99	84.667	Macaca_mulatta
ENSCAPG00000010677	SND1	98	84.710	ENSMNEG00000039808	SND1	99	85.440	Macaca_nemestrina
ENSCAPG00000010677	SND1	98	84.598	ENSMLEG00000029040	SND1	99	85.327	Mandrillus_leucophaeus
ENSCAPG00000010677	SND1	99	73.678	ENSMAMG00000011739	snd1	99	73.678	Mastacembelus_armatus
ENSCAPG00000010677	SND1	98	73.192	ENSMZEG00005005681	snd1	98	73.192	Maylandia_zebra
ENSCAPG00000010677	SND1	98	84.710	ENSMICG00000000097	SND1	99	84.667	Microcebus_murinus
ENSCAPG00000010677	SND1	98	84.710	ENSMOCG00000005040	Snd1	99	84.667	Microtus_ochrogaster
ENSCAPG00000010677	SND1	97	73.690	ENSMMOG00000001795	snd1	97	74.324	Mola_mola
ENSCAPG00000010677	SND1	98	82.889	ENSMODG00000015182	SND1	99	82.908	Monodelphis_domestica
ENSCAPG00000010677	SND1	98	73.526	ENSMALG00000012071	snd1	98	73.526	Monopterus_albus
ENSCAPG00000010677	SND1	98	84.821	MGP_CAROLIEiJ_G0028159	Snd1	99	84.778	Mus_caroli
ENSCAPG00000010677	SND1	98	84.598	ENSMUSG00000001424	Snd1	99	84.556	Mus_musculus
ENSCAPG00000010677	SND1	98	84.821	MGP_PahariEiJ_G0021917	Snd1	99	84.778	Mus_pahari
ENSCAPG00000010677	SND1	98	84.821	MGP_SPRETEiJ_G0029159	Snd1	99	84.778	Mus_spretus
ENSCAPG00000010677	SND1	98	84.693	ENSMPUG00000006545	SND1	98	84.693	Mustela_putorius_furo
ENSCAPG00000010677	SND1	98	84.187	ENSMLUG00000017130	SND1	100	84.187	Myotis_lucifugus
ENSCAPG00000010677	SND1	98	84.933	ENSNGAG00000011186	Snd1	99	84.889	Nannospalax_galili
ENSCAPG00000010677	SND1	98	73.192	ENSNBRG00000006681	snd1	98	73.192	Neolamprologus_brichardi
ENSCAPG00000010677	SND1	98	84.667	ENSNLEG00000012263	SND1	99	85.440	Nomascus_leucogenys
ENSCAPG00000010677	SND1	90	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSCAPG00000010677	SND1	98	85.317	ENSODEG00000011502	SND1	99	85.333	Octodon_degus
ENSCAPG00000010677	SND1	98	73.192	ENSONIG00000011481	snd1	96	73.192	Oreochromis_niloticus
ENSCAPG00000010677	SND1	97	81.320	ENSOANG00000000817	SND1	99	82.000	Ornithorhynchus_anatinus
ENSCAPG00000010677	SND1	98	84.444	ENSOCUG00000001620	SND1	99	84.444	Oryctolagus_cuniculus
ENSCAPG00000010677	SND1	97	73.649	ENSORLG00000015201	snd1	99	73.060	Oryzias_latipes
ENSCAPG00000010677	SND1	97	73.874	ENSORLG00020013991	snd1	99	73.282	Oryzias_latipes_hni
ENSCAPG00000010677	SND1	97	73.761	ENSORLG00015012436	snd1	99	73.171	Oryzias_latipes_hsok
ENSCAPG00000010677	SND1	97	74.212	ENSOMEG00000006406	snd1	97	74.212	Oryzias_melastigma
ENSCAPG00000010677	SND1	98	84.298	ENSOGAG00000013356	SND1	93	84.257	Otolemur_garnettii
ENSCAPG00000010677	SND1	97	83.070	ENSOARG00000002149	SND1	99	83.070	Ovis_aries
ENSCAPG00000010677	SND1	98	84.598	ENSPPAG00000042947	SND1	99	85.327	Pan_paniscus
ENSCAPG00000010677	SND1	98	84.778	ENSPPRG00000004494	SND1	99	84.778	Panthera_pardus
ENSCAPG00000010677	SND1	98	84.667	ENSPTIG00000014214	SND1	99	84.667	Panthera_tigris_altaica
ENSCAPG00000010677	SND1	98	84.598	ENSPTRG00000023911	SND1	99	85.327	Pan_troglodytes
ENSCAPG00000010677	SND1	98	86.705	ENSPANG00000011997	SND1	99	86.651	Papio_anubis
ENSCAPG00000010677	SND1	97	71.508	ENSPKIG00000023494	snd1	100	70.141	Paramormyrops_kingsleyae
ENSCAPG00000010677	SND1	91	72.401	ENSPMGG00000003629	snd1	100	72.401	Periophthalmus_magnuspinnatus
ENSCAPG00000010677	SND1	98	84.933	ENSPEMG00000010240	Snd1	99	84.889	Peromyscus_maniculatus_bairdii
ENSCAPG00000010677	SND1	97	65.090	ENSPMAG00000007915	-	99	65.653	Petromyzon_marinus
ENSCAPG00000010677	SND1	98	82.778	ENSPCIG00000011561	SND1	99	82.797	Phascolarctos_cinereus
ENSCAPG00000010677	SND1	97	73.802	ENSPFOG00000001557	snd1	97	74.437	Poecilia_formosa
ENSCAPG00000010677	SND1	97	73.802	ENSPLAG00000018459	snd1	94	74.437	Poecilia_latipinna
ENSCAPG00000010677	SND1	97	74.247	ENSPMEG00000006803	snd1	97	74.887	Poecilia_mexicana
ENSCAPG00000010677	SND1	97	74.025	ENSPREG00000002189	snd1	97	74.662	Poecilia_reticulata
ENSCAPG00000010677	SND1	91	90.244	ENSPPYG00000017972	SND1	99	90.244	Pongo_abelii
ENSCAPG00000010677	SND1	98	75.553	ENSPCAG00000011305	SND1	99	76.333	Procavia_capensis
ENSCAPG00000010677	SND1	98	85.118	ENSPCOG00000026791	SND1	99	85.214	Propithecus_coquereli
ENSCAPG00000010677	SND1	98	83.128	ENSPVAG00000013945	SND1	99	83.092	Pteropus_vampyrus
ENSCAPG00000010677	SND1	98	73.192	ENSPNYG00000000932	snd1	98	73.192	Pundamilia_nyererei
ENSCAPG00000010677	SND1	98	73.585	ENSPNAG00000001206	snd1	98	73.585	Pygocentrus_nattereri
ENSCAPG00000010677	SND1	98	84.710	ENSRNOG00000031173	Snd1	100	84.009	Rattus_norvegicus
ENSCAPG00000010677	SND1	78	85.741	ENSRBIG00000027782	-	93	85.606	Rhinopithecus_bieti
ENSCAPG00000010677	SND1	98	84.710	ENSRROG00000033020	SND1	99	84.667	Rhinopithecus_roxellana
ENSCAPG00000010677	SND1	97	86.728	ENSSBOG00000032461	SND1	99	86.728	Saimiri_boliviensis_boliviensis
ENSCAPG00000010677	SND1	98	80.834	ENSSHAG00000015359	SND1	99	80.834	Sarcophilus_harrisii
ENSCAPG00000010677	SND1	97	73.408	ENSSFOG00015001103	snd1	97	73.408	Scleropages_formosus
ENSCAPG00000010677	SND1	97	73.649	ENSSMAG00000001932	snd1	92	73.649	Scophthalmus_maximus
ENSCAPG00000010677	SND1	97	74.437	ENSSDUG00000002699	snd1	91	74.437	Seriola_dumerili
ENSCAPG00000010677	SND1	97	67.005	ENSSLDG00000001950	snd1	97	67.005	Seriola_lalandi_dorsalis
ENSCAPG00000010677	SND1	91	95.283	ENSSARG00000004877	SND1	90	95.283	Sorex_araneus
ENSCAPG00000010677	SND1	65	75.731	ENSSPUG00000017586	SND1	96	75.731	Sphenodon_punctatus
ENSCAPG00000010677	SND1	78	76.325	ENSSPAG00000021398	snd1	94	76.325	Stegastes_partitus
ENSCAPG00000010677	SND1	98	84.710	ENSSSCG00000016590	SND1	99	84.667	Sus_scrofa
ENSCAPG00000010677	SND1	90	86.111	ENSTRUG00000014067	snd1	86	86.111	Takifugu_rubripes
ENSCAPG00000010677	SND1	97	73.986	ENSTNIG00000011019	snd1	94	77.138	Tetraodon_nigroviridis
ENSCAPG00000010677	SND1	93	79.176	ENSTBEG00000003999	SND1	100	79.176	Tupaia_belangeri
ENSCAPG00000010677	SND1	98	80.534	ENSTTRG00000006059	SND1	99	80.509	Tursiops_truncatus
ENSCAPG00000010677	SND1	88	89.583	ENSUAMG00000005604	-	93	89.583	Ursus_americanus
ENSCAPG00000010677	SND1	70	79.439	ENSUAMG00000002820	-	85	79.439	Ursus_americanus
ENSCAPG00000010677	SND1	98	84.889	ENSUMAG00000005960	SND1	99	84.889	Ursus_maritimus
ENSCAPG00000010677	SND1	81	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSCAPG00000010677	SND1	98	84.333	ENSVVUG00000007226	SND1	99	84.667	Vulpes_vulpes
ENSCAPG00000010677	SND1	97	73.244	ENSXETG00000023043	snd1	100	73.973	Xenopus_tropicalis
ENSCAPG00000010677	SND1	92	70.106	ENSXCOG00000013629	snd1	99	70.735	Xiphophorus_couchianus
ENSCAPG00000010677	SND1	97	74.247	ENSXMAG00000011469	snd1	97	74.887	Xiphophorus_maculatus