EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000010714 (Gene tree)
Gene ID: -
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 1146 bases
Position: chrAVPZ01000189.1:11564007-11565152
Accession: 13629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000009196	RRM_5	PF13893.6	1.1e-06	1	1
ENSCAPP00000009196	RRM_1	PF00076.22	6.7e-51	1	3
ENSCAPP00000009196	RRM_1	PF00076.22	6.7e-51	2	3
ENSCAPP00000009196	RRM_1	PF00076.22	6.7e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000012909	PABPC5-201	723	-	ENSCAPP00000009196	240 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000010714's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000010714's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000010714	PABPC5	82	58.192	ENSCAPG00000000555	PABPC4L	99	58.192
ENSCAPG00000010714	PABPC5	82	56.497	ENSCAPG00000014519	PABPC1L	56	56.497
ENSCAPG00000010714	PABPC5	93	64.407	ENSCAPG00000015984	PABPC4	60	64.407
ENSCAPG00000010714	PABPC5	76	30.864	ENSCAPG00000017278	TIA1	54	30.864
ENSCAPG00000010714	PABPC5	73	35.802	ENSCAPG00000003609	ELAVL2	84	35.802
ENSCAPG00000010714	PABPC5	81	59.887	ENSCAPG00000013098	PABPC1	52	59.887

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000010714	PABPC5	99	88.421	ENSG00000174740	PABPC5	100	87.958	Homo_sapiens
ENSCAPG00000010714	PABPC5	99	87.895	ENSAMEG00000020114	PABPC5	99	87.895	Ailuropoda_melanoleuca
ENSCAPG00000010714	PABPC5	99	88.421	ENSANAG00000005063	PABPC5	99	88.421	Aotus_nancymaae
ENSCAPG00000010714	PABPC5	100	88.482	ENSBTAG00000019942	PABPC5	99	88.482	Bos_taurus
ENSCAPG00000010714	PABPC5	99	88.421	ENSCJAG00000003665	PABPC5	99	88.421	Callithrix_jacchus
ENSCAPG00000010714	PABPC5	100	86.387	ENSCAFG00000017452	PABPC5	99	86.387	Canis_familiaris
ENSCAPG00000010714	PABPC5	100	87.435	ENSCHIG00000019004	PABPC5	99	87.435	Capra_hircus
ENSCAPG00000010714	PABPC5	100	87.958	ENSTSYG00000036351	PABPC5	99	87.958	Carlito_syrichta
ENSCAPG00000010714	PABPC5	100	96.859	ENSCPOG00000002555	PABPC5	99	96.859	Cavia_porcellus
ENSCAPG00000010714	PABPC5	99	88.421	ENSCCAG00000032154	PABPC5	99	88.421	Cebus_capucinus
ENSCAPG00000010714	PABPC5	99	88.421	ENSCATG00000043083	PABPC5	99	88.421	Cercocebus_atys
ENSCAPG00000010714	PABPC5	100	90.052	ENSCLAG00000000647	PABPC5	99	90.052	Chinchilla_lanigera
ENSCAPG00000010714	PABPC5	99	88.421	ENSCSAG00000000065	PABPC5	99	88.421	Chlorocebus_sabaeus
ENSCAPG00000010714	PABPC5	99	88.421	ENSCANG00000011473	PABPC5	99	88.421	Colobus_angolensis_palliatus
ENSCAPG00000010714	PABPC5	100	85.340	ENSCGRG00000018699	Pabpc5	99	85.340	Cricetulus_griseus_crigri
ENSCAPG00000010714	PABPC5	100	96.552	ENSETEG00000011832	PABPC5	65	96.552	Echinops_telfairi
ENSCAPG00000010714	PABPC5	100	87.958	ENSEASG00005014396	PABPC5	99	87.958	Equus_asinus_asinus
ENSCAPG00000010714	PABPC5	100	87.958	ENSECAG00000003452	PABPC5	99	87.958	Equus_caballus
ENSCAPG00000010714	PABPC5	100	90.110	ENSFCAG00000004998	PABPC5	99	90.110	Felis_catus
ENSCAPG00000010714	PABPC5	100	89.529	ENSFDAG00000000126	PABPC5	99	89.529	Fukomys_damarensis
ENSCAPG00000010714	PABPC5	99	88.421	ENSGGOG00000007622	PABPC5	99	88.421	Gorilla_gorilla
ENSCAPG00000010714	PABPC5	80	88.542	ENSJJAG00000011960	Pabpc5	100	88.542	Jaculus_jaculus
ENSCAPG00000010714	PABPC5	99	88.421	ENSMFAG00000024561	PABPC5	99	88.421	Macaca_fascicularis
ENSCAPG00000010714	PABPC5	99	88.421	ENSMMUG00000011562	PABPC5	99	88.421	Macaca_mulatta
ENSCAPG00000010714	PABPC5	99	88.421	ENSMNEG00000037604	PABPC5	99	88.421	Macaca_nemestrina
ENSCAPG00000010714	PABPC5	99	88.421	ENSMLEG00000028318	PABPC5	99	88.421	Mandrillus_leucophaeus
ENSCAPG00000010714	PABPC5	100	86.911	ENSMICG00000041706	PABPC5	99	86.911	Microcebus_murinus
ENSCAPG00000010714	PABPC5	100	85.340	ENSMOCG00000001554	Pabpc5	99	85.340	Microtus_ochrogaster
ENSCAPG00000010714	PABPC5	99	84.615	MGP_CAROLIEiJ_G0033367	Pabpc5	99	84.615	Mus_caroli
ENSCAPG00000010714	PABPC5	99	85.714	ENSMUSG00000034732	Pabpc5	99	85.714	Mus_musculus
ENSCAPG00000010714	PABPC5	100	83.246	MGP_PahariEiJ_G0031908	Pabpc5	99	83.246	Mus_pahari
ENSCAPG00000010714	PABPC5	99	85.714	MGP_SPRETEiJ_G0034533	Pabpc5	99	85.714	Mus_spretus
ENSCAPG00000010714	PABPC5	100	86.387	ENSMPUG00000018465	PABPC5	99	86.387	Mustela_putorius_furo
ENSCAPG00000010714	PABPC5	100	85.340	ENSMLUG00000008244	PABPC5	99	85.340	Myotis_lucifugus
ENSCAPG00000010714	PABPC5	80	87.500	ENSNGAG00000004371	Pabpc5	100	87.500	Nannospalax_galili
ENSCAPG00000010714	PABPC5	99	88.421	ENSNLEG00000035086	PABPC5	99	88.421	Nomascus_leucogenys
ENSCAPG00000010714	PABPC5	75	43.231	ENSOPRG00000000856	PABPC5	99	43.231	Ochotona_princeps
ENSCAPG00000010714	PABPC5	100	88.021	ENSOCUG00000010919	PABPC5	99	88.021	Oryctolagus_cuniculus
ENSCAPG00000010714	PABPC5	100	89.005	ENSOGAG00000006882	PABPC5	99	89.005	Otolemur_garnettii
ENSCAPG00000010714	PABPC5	100	87.435	ENSOARG00000010260	PABPC5	99	87.435	Ovis_aries
ENSCAPG00000010714	PABPC5	99	87.895	ENSPPAG00000007378	PABPC5	99	87.895	Pan_paniscus
ENSCAPG00000010714	PABPC5	100	90.110	ENSPPRG00000010742	PABPC5	99	90.110	Panthera_pardus
ENSCAPG00000010714	PABPC5	100	90.110	ENSPTIG00000001480	PABPC5	99	90.110	Panthera_tigris_altaica
ENSCAPG00000010714	PABPC5	99	88.421	ENSPTRG00000022078	PABPC5	99	88.421	Pan_troglodytes
ENSCAPG00000010714	PABPC5	99	88.421	ENSPANG00000018282	PABPC5	99	88.421	Papio_anubis
ENSCAPG00000010714	PABPC5	100	85.864	ENSPEMG00000000171	Pabpc5	99	85.864	Peromyscus_maniculatus_bairdii
ENSCAPG00000010714	PABPC5	99	88.421	ENSPPYG00000020526	PABPC5	99	88.421	Pongo_abelii
ENSCAPG00000010714	PABPC5	98	41.549	ENSPCAG00000015577	PABPC5	99	40.493	Procavia_capensis
ENSCAPG00000010714	PABPC5	100	87.435	ENSPCOG00000000676	PABPC5	99	87.435	Propithecus_coquereli
ENSCAPG00000010714	PABPC5	100	87.435	ENSPVAG00000006465	PABPC5	99	87.435	Pteropus_vampyrus
ENSCAPG00000010714	PABPC5	100	84.293	ENSRNOG00000003354	Pabpc5	99	84.293	Rattus_norvegicus
ENSCAPG00000010714	PABPC5	99	88.421	ENSRBIG00000011760	PABPC5	99	88.421	Rhinopithecus_bieti
ENSCAPG00000010714	PABPC5	99	88.421	ENSRROG00000036708	PABPC5	99	88.421	Rhinopithecus_roxellana
ENSCAPG00000010714	PABPC5	99	87.895	ENSSBOG00000008658	PABPC5	99	87.895	Saimiri_boliviensis_boliviensis
ENSCAPG00000010714	PABPC5	100	84.817	ENSSARG00000014012	PABPC5	99	84.817	Sorex_araneus
ENSCAPG00000010714	PABPC5	100	86.911	ENSSSCG00000040194	PABPC5	99	86.911	Sus_scrofa
ENSCAPG00000010714	PABPC5	100	89.529	ENSTBEG00000016482	PABPC5	99	89.529	Tupaia_belangeri
ENSCAPG00000010714	PABPC5	100	87.435	ENSUAMG00000013627	PABPC5	99	87.435	Ursus_americanus
ENSCAPG00000010714	PABPC5	100	86.911	ENSUMAG00000023934	PABPC5	99	86.911	Ursus_maritimus
ENSCAPG00000010714	PABPC5	100	86.911	ENSVPAG00000001063	PABPC5	99	86.911	Vicugna_pacos
ENSCAPG00000010714	PABPC5	100	86.911	ENSVVUG00000013172	PABPC5	99	86.911	Vulpes_vulpes