EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000011021 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 5324 bases
Position: chrAVPZ01000091.1:1308441-1313764
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000009578	TUDOR	PF00567.24	1.8e-05	1	1
ENSCAPP00000009578	SMN	PF06003.12	4.5e-69	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000013294	-	663	-	ENSCAPP00000009578	221 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000011021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000011021's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000011021	-	100	67.105	ENSG00000172062	SMN1	79	66.667	Homo_sapiens
ENSCAPG00000011021	-	100	67.105	ENSG00000205571	SMN2	59	92.593	Homo_sapiens
ENSCAPG00000011021	-	88	38.938	ENSAPOG00000011324	smn1	73	47.867	Acanthochromis_polyacanthus
ENSCAPG00000011021	-	96	69.585	ENSAMEG00000003316	-	72	70.046	Ailuropoda_melanoleuca
ENSCAPG00000011021	-	87	42.500	ENSACIG00000019772	-	82	42.986	Amphilophus_citrinellus
ENSCAPG00000011021	-	88	46.667	ENSAOCG00000024444	smn1	73	47.393	Amphiprion_ocellaris
ENSCAPG00000011021	-	91	43.318	ENSAPEG00000016504	smn1	75	47.867	Amphiprion_percula
ENSCAPG00000011021	-	53	55.085	ENSATEG00000002182	smn1	67	44.444	Anabas_testudineus
ENSCAPG00000011021	-	82	44.776	ENSAPLG00000010912	-	91	48.913	Anas_platyrhynchos
ENSCAPG00000011021	-	84	51.872	ENSACAG00000010017	-	70	50.732	Anolis_carolinensis
ENSCAPG00000011021	-	96	69.820	ENSANAG00000032133	-	82	68.261	Aotus_nancymaae
ENSCAPG00000011021	-	88	47.030	ENSACLG00000007308	smn1	74	48.444	Astatotilapia_calliptera
ENSCAPG00000011021	-	100	67.811	ENSBTAG00000005743	SMN2	77	68.722	Bos_taurus
ENSCAPG00000011021	-	96	70.588	ENSCJAG00000016290	-	75	70.909	Callithrix_jacchus
ENSCAPG00000011021	-	100	70.485	ENSCAFG00000007812	SMN	76	69.469	Canis_familiaris
ENSCAPG00000011021	-	100	70.485	ENSCAFG00020019229	-	71	69.469	Canis_lupus_dingo
ENSCAPG00000011021	-	100	70.435	ENSCHIG00000015559	-	75	68.996	Capra_hircus
ENSCAPG00000011021	-	96	69.585	ENSTSYG00000012058	-	77	69.027	Carlito_syrichta
ENSCAPG00000011021	-	96	88.584	ENSCPOG00000036973	-	76	89.041	Cavia_porcellus
ENSCAPG00000011021	-	100	88.987	ENSCPOG00000012328	-	77	89.427	Cavia_porcellus
ENSCAPG00000011021	-	96	70.183	ENSCCAG00000018127	-	74	69.725	Cebus_capucinus
ENSCAPG00000011021	-	100	67.421	ENSCATG00000037002	-	77	69.406	Cercocebus_atys
ENSCAPG00000011021	-	100	77.679	ENSCLAG00000000284	-	76	76.786	Chinchilla_lanigera
ENSCAPG00000011021	-	100	69.298	ENSCSAG00000015688	-	76	68.860	Chlorocebus_sabaeus
ENSCAPG00000011021	-	100	62.719	ENSCHOG00000007346	-	66	88.889	Choloepus_hoffmanni
ENSCAPG00000011021	-	91	56.373	ENSCPBG00000010968	-	75	55.882	Chrysemys_picta_bellii
ENSCAPG00000011021	-	96	67.273	ENSCANG00000033324	-	74	66.818	Colobus_angolensis_palliatus
ENSCAPG00000011021	-	100	68.722	ENSCANG00000038242	-	78	71.429	Colobus_angolensis_palliatus
ENSCAPG00000011021	-	100	65.351	ENSCGRG00001017959	-	76	66.079	Cricetulus_griseus_chok1gshd
ENSCAPG00000011021	-	93	62.981	ENSCGRG00001016998	-	82	62.019	Cricetulus_griseus_chok1gshd
ENSCAPG00000011021	-	100	65.351	ENSCGRG00000007698	Smn1	76	66.079	Cricetulus_griseus_crigri
ENSCAPG00000011021	-	84	41.584	ENSDARG00000018494	smn1	73	47.115	Danio_rerio
ENSCAPG00000011021	-	100	68.889	ENSDNOG00000007283	-	92	69.333	Dasypus_novemcinctus
ENSCAPG00000011021	-	61	63.433	ENSDNOG00000045949	-	56	59.559	Dasypus_novemcinctus
ENSCAPG00000011021	-	100	68.142	ENSDORG00000007082	Smn1	82	65.487	Dipodomys_ordii
ENSCAPG00000011021	-	54	71.667	ENSETEG00000001406	-	65	63.704	Echinops_telfairi
ENSCAPG00000011021	-	100	62.281	ENSEASG00005018000	-	78	62.281	Equus_asinus_asinus
ENSCAPG00000011021	-	100	66.228	ENSECAG00000015215	-	77	66.228	Equus_caballus
ENSCAPG00000011021	-	100	64.286	ENSEEUG00000015777	-	88	64.286	Erinaceus_europaeus
ENSCAPG00000011021	-	87	47.549	ENSELUG00000018067	smn1	72	45.631	Esox_lucius
ENSCAPG00000011021	-	100	68.282	ENSFCAG00000028292	SMN	77	67.841	Felis_catus
ENSCAPG00000011021	-	91	46.606	ENSFALG00000012320	-	71	53.431	Ficedula_albicollis
ENSCAPG00000011021	-	100	76.106	ENSFDAG00000017683	-	76	74.667	Fukomys_damarensis
ENSCAPG00000011021	-	54	48.333	ENSFHEG00000018508	smn1	77	46.479	Fundulus_heteroclitus
ENSCAPG00000011021	-	91	50.990	ENSGALG00000002430	SMN	76	49.268	Gallus_gallus
ENSCAPG00000011021	-	88	44.221	ENSGAFG00000009501	smn1	73	45.411	Gambusia_affinis
ENSCAPG00000011021	-	88	45.876	ENSGACG00000010584	smn1	70	43.961	Gasterosteus_aculeatus
ENSCAPG00000011021	-	86	50.794	ENSGAGG00000013639	-	73	44.304	Gopherus_agassizii
ENSCAPG00000011021	-	91	55.446	ENSGAGG00000011374	-	71	54.902	Gopherus_agassizii
ENSCAPG00000011021	-	65	74.306	ENSGGOG00000026704	-	63	77.037	Gorilla_gorilla
ENSCAPG00000011021	-	100	66.063	ENSGGOG00000003872	-	76	66.038	Gorilla_gorilla
ENSCAPG00000011021	-	88	47.030	ENSHBUG00000013987	smn1	77	48.889	Haplochromis_burtoni
ENSCAPG00000011021	-	96	74.771	ENSHGLG00000001905	-	77	72.811	Heterocephalus_glaber_female
ENSCAPG00000011021	-	100	76.991	ENSHGLG00000001018	-	76	76.000	Heterocephalus_glaber_female
ENSCAPG00000011021	-	100	76.991	ENSHGLG00100011252	-	76	76.000	Heterocephalus_glaber_male
ENSCAPG00000011021	-	96	74.771	ENSHGLG00100018676	-	80	72.811	Heterocephalus_glaber_male
ENSCAPG00000011021	-	87	39.130	ENSHCOG00000017136	smn1	74	42.793	Hippocampus_comes
ENSCAPG00000011021	-	85	42.424	ENSIPUG00000012580	smn1	66	44.762	Ictalurus_punctatus
ENSCAPG00000011021	-	100	70.485	ENSSTOG00000012288	-	78	72.350	Ictidomys_tridecemlineatus
ENSCAPG00000011021	-	88	45.545	ENSKMAG00000007239	smn1	81	44.444	Kryptolebias_marmoratus
ENSCAPG00000011021	-	98	42.672	ENSLBEG00000022550	smn1	81	43.304	Labrus_bergylta
ENSCAPG00000011021	-	83	33.962	ENSLACG00000009808	-	69	34.742	Latimeria_chalumnae
ENSCAPG00000011021	-	84	46.486	ENSLOCG00000011339	smn1	74	48.826	Lepisosteus_oculatus
ENSCAPG00000011021	-	95	68.493	ENSLAFG00000003425	-	100	57.485	Loxodonta_africana
ENSCAPG00000011021	-	100	65.351	ENSMFAG00000008812	-	76	64.912	Macaca_fascicularis
ENSCAPG00000011021	-	100	69.737	ENSMFAG00000031523	SMN1	80	69.298	Macaca_fascicularis
ENSCAPG00000011021	-	100	69.737	ENSMMUG00000020214	SMN1	77	70.776	Macaca_mulatta
ENSCAPG00000011021	-	100	64.912	ENSMMUG00000030594	-	76	64.474	Macaca_mulatta
ENSCAPG00000011021	-	91	58.173	ENSMNEG00000036423	-	81	57.692	Macaca_nemestrina
ENSCAPG00000011021	-	100	69.737	ENSMNEG00000035094	-	77	70.776	Macaca_nemestrina
ENSCAPG00000011021	-	100	68.559	ENSMLEG00000041902	-	78	70.776	Mandrillus_leucophaeus
ENSCAPG00000011021	-	88	44.878	ENSMAMG00000011034	smn1	73	42.857	Mastacembelus_armatus
ENSCAPG00000011021	-	88	46.535	ENSMZEG00005013634	smn1	77	48.889	Maylandia_zebra
ENSCAPG00000011021	-	82	52.747	ENSMGAG00000008889	-	89	51.087	Meleagris_gallopavo
ENSCAPG00000011021	-	100	66.667	ENSMAUG00000010262	Smn1	76	66.079	Mesocricetus_auratus
ENSCAPG00000011021	-	89	63.131	ENSMICG00000034708	-	60	77.778	Microcebus_murinus
ENSCAPG00000011021	-	100	63.596	ENSMOCG00000017833	Smn1	76	64.317	Microtus_ochrogaster
ENSCAPG00000011021	-	87	42.647	ENSMMOG00000005504	smn1	73	44.240	Mola_mola
ENSCAPG00000011021	-	83	52.941	ENSMODG00000001436	-	70	57.561	Monodelphis_domestica
ENSCAPG00000011021	-	88	45.366	ENSMALG00000008025	smn1	77	45.852	Monopterus_albus
ENSCAPG00000011021	-	100	65.789	MGP_CAROLIEiJ_G0018836	Smn1	76	64.912	Mus_caroli
ENSCAPG00000011021	-	100	64.912	ENSMUSG00000021645	Smn1	76	64.474	Mus_musculus
ENSCAPG00000011021	-	96	66.972	MGP_PahariEiJ_G0015911	Smn1	76	64.159	Mus_pahari
ENSCAPG00000011021	-	100	64.912	MGP_SPRETEiJ_G0019718	Smn1	76	64.474	Mus_spretus
ENSCAPG00000011021	-	100	69.298	ENSMPUG00000014470	-	79	69.604	Mustela_putorius_furo
ENSCAPG00000011021	-	100	67.660	ENSMLUG00000010603	-	74	66.667	Myotis_lucifugus
ENSCAPG00000011021	-	96	68.493	ENSNGAG00000019833	Smn1	75	66.972	Nannospalax_galili
ENSCAPG00000011021	-	88	43.284	ENSNBRG00000023000	smn1	77	47.556	Neolamprologus_brichardi
ENSCAPG00000011021	-	96	68.493	ENSNLEG00000004454	-	77	68.037	Nomascus_leucogenys
ENSCAPG00000011021	-	84	54.106	ENSMEUG00000011393	-	91	60.000	Notamacropus_eugenii
ENSCAPG00000011021	-	100	67.686	ENSOPRG00000002015	-	89	67.686	Ochotona_princeps
ENSCAPG00000011021	-	100	80.176	ENSODEG00000015976	-	78	79.295	Octodon_degus
ENSCAPG00000011021	-	88	42.786	ENSONIG00000011799	smn1	77	47.111	Oreochromis_niloticus
ENSCAPG00000011021	-	86	51.429	ENSOANG00000001626	-	72	59.901	Ornithorhynchus_anatinus
ENSCAPG00000011021	-	95	68.018	ENSOCUG00000025183	-	81	69.091	Oryctolagus_cuniculus
ENSCAPG00000011021	-	83	71.123	ENSOCUG00000026649	-	74	68.349	Oryctolagus_cuniculus
ENSCAPG00000011021	-	95	71.028	ENSOCUG00000017097	-	73	70.423	Oryctolagus_cuniculus
ENSCAPG00000011021	-	91	41.589	ENSORLG00000010552	smn1	73	45.455	Oryzias_latipes
ENSCAPG00000011021	-	91	48.529	ENSORLG00020007936	smn1	70	46.535	Oryzias_latipes_hni
ENSCAPG00000011021	-	88	44.498	ENSORLG00015022425	smn1	73	45.238	Oryzias_latipes_hsok
ENSCAPG00000011021	-	95	62.727	ENSOGAG00000031414	-	72	64.423	Otolemur_garnettii
ENSCAPG00000011021	-	100	70.175	ENSOARG00000005425	-	81	68.282	Ovis_aries
ENSCAPG00000011021	-	100	66.667	ENSPPAG00000036640	-	79	66.228	Pan_paniscus
ENSCAPG00000011021	-	100	68.722	ENSPPRG00000005575	-	77	68.282	Panthera_pardus
ENSCAPG00000011021	-	100	67.982	ENSPTIG00000007745	-	77	67.544	Panthera_tigris_altaica
ENSCAPG00000011021	-	100	66.234	ENSPTRG00000016955	-	79	66.234	Pan_troglodytes
ENSCAPG00000011021	-	96	71.233	ENSPANG00000013601	-	76	69.298	Papio_anubis
ENSCAPG00000011021	-	100	65.351	ENSPANG00000000253	-	75	65.351	Papio_anubis
ENSCAPG00000011021	-	84	46.114	ENSPKIG00000011096	smn1	72	43.902	Paramormyrops_kingsleyae
ENSCAPG00000011021	-	91	55.825	ENSPSIG00000014787	-	65	55.610	Pelodiscus_sinensis
ENSCAPG00000011021	-	88	43.878	ENSPMGG00000012285	smn1	74	42.233	Periophthalmus_magnuspinnatus
ENSCAPG00000011021	-	82	42.328	ENSPMAG00000005004	smn1	64	39.572	Petromyzon_marinus
ENSCAPG00000011021	-	84	54.589	ENSPCIG00000025764	-	71	59.512	Phascolarctos_cinereus
ENSCAPG00000011021	-	88	44.724	ENSPLAG00000012071	smn1	73	46.377	Poecilia_latipinna
ENSCAPG00000011021	-	88	44.221	ENSPMEG00000017085	smn1	73	45.894	Poecilia_mexicana
ENSCAPG00000011021	-	88	45.226	ENSPREG00000005824	smn1	73	46.860	Poecilia_reticulata
ENSCAPG00000011021	-	100	66.667	ENSPPYG00000015533	-	80	66.228	Pongo_abelii
ENSCAPG00000011021	-	51	66.372	ENSPPYG00000019189	-	56	66.071	Pongo_abelii
ENSCAPG00000011021	-	100	64.192	ENSPCAG00000004187	-	84	64.629	Procavia_capensis
ENSCAPG00000011021	-	67	77.852	ENSPCOG00000022307	-	63	76.389	Propithecus_coquereli
ENSCAPG00000011021	-	100	69.469	ENSPVAG00000005977	-	76	69.469	Pteropus_vampyrus
ENSCAPG00000011021	-	88	43.284	ENSPNYG00000014148	smn1	77	47.556	Pundamilia_nyererei
ENSCAPG00000011021	-	84	42.051	ENSPNAG00000014007	smn1	63	44.976	Pygocentrus_nattereri
ENSCAPG00000011021	-	96	65.753	ENSRNOG00000018067	Smn1	75	66.514	Rattus_norvegicus
ENSCAPG00000011021	-	96	63.551	ENSRBIG00000036775	-	72	64.151	Rhinopithecus_bieti
ENSCAPG00000011021	-	100	69.298	ENSRBIG00000037052	-	76	68.860	Rhinopithecus_bieti
ENSCAPG00000011021	-	96	61.321	ENSRROG00000031088	-	76	57.709	Rhinopithecus_roxellana
ENSCAPG00000011021	-	100	69.298	ENSRROG00000039399	-	79	68.860	Rhinopithecus_roxellana
ENSCAPG00000011021	-	96	72.685	ENSSBOG00000011665	-	74	72.811	Saimiri_boliviensis_boliviensis
ENSCAPG00000011021	-	92	64.220	ENSSBOG00000020112	-	75	65.438	Saimiri_boliviensis_boliviensis
ENSCAPG00000011021	-	84	54.589	ENSSHAG00000001499	-	75	59.512	Sarcophilus_harrisii
ENSCAPG00000011021	-	84	45.405	ENSSFOG00015015507	smn1	72	45.714	Scleropages_formosus
ENSCAPG00000011021	-	88	37.981	ENSSMAG00000007922	smn1	73	43.810	Scophthalmus_maximus
ENSCAPG00000011021	-	98	35.319	ENSSDUG00000018533	smn1	77	41.850	Seriola_dumerili
ENSCAPG00000011021	-	88	38.073	ENSSLDG00000021135	smn1	77	42.291	Seriola_lalandi_dorsalis
ENSCAPG00000011021	-	91	56.338	ENSSPUG00000000373	-	71	58.128	Sphenodon_punctatus
ENSCAPG00000011021	-	86	46.766	ENSSPAG00000004345	smn1	75	46.544	Stegastes_partitus
ENSCAPG00000011021	-	87	49.744	ENSSSCG00000033865	-	87	47.959	Sus_scrofa
ENSCAPG00000011021	-	85	47.368	ENSSSCG00000029127	-	70	48.214	Sus_scrofa
ENSCAPG00000011021	-	87	70.854	ENSSSCG00000016970	-	83	68.722	Sus_scrofa
ENSCAPG00000011021	-	89	46.977	ENSTGUG00000001548	-	73	50.000	Taeniopygia_guttata
ENSCAPG00000011021	-	94	39.819	ENSTRUG00000000736	smn	73	43.961	Takifugu_rubripes
ENSCAPG00000011021	-	96	39.013	ENSTNIG00000009892	smn1	77	41.256	Tetraodon_nigroviridis
ENSCAPG00000011021	-	65	77.083	ENSTBEG00000002399	-	65	80.000	Tupaia_belangeri
ENSCAPG00000011021	-	96	68.692	ENSTTRG00000005080	-	75	65.778	Tursiops_truncatus
ENSCAPG00000011021	-	75	74.699	ENSUAMG00000024947	-	51	75.694	Ursus_americanus
ENSCAPG00000011021	-	100	69.027	ENSUMAG00000007842	-	57	69.469	Ursus_maritimus
ENSCAPG00000011021	-	65	92.593	ENSVPAG00000009887	-	79	57.333	Vicugna_pacos
ENSCAPG00000011021	-	100	70.485	ENSVVUG00000006934	-	76	69.469	Vulpes_vulpes
ENSCAPG00000011021	-	91	49.756	ENSXETG00000018189	smn2	69	49.515	Xenopus_tropicalis
ENSCAPG00000011021	-	88	44.330	ENSXMAG00000001521	smn1	73	45.411	Xiphophorus_maculatus