EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000011179 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 198 bases
Position: chrAVPZ01000038.1:2978677-2978874
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000009761	LSM	PF01423.22	4.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000013480	-	198	-	ENSCAPP00000009761	65 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000011179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000011179's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000011179	-	89	44.828	ENSCAPG00000007242	SNRPF	68	44.828
ENSCAPG00000011179	-	100	96.923	ENSCAPG00000008104	LSM6	81	96.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000011179	-	100	96.923	ENSG00000164167	LSM6	81	96.923	Homo_sapiens
ENSCAPG00000011179	-	100	93.846	ENSAPOG00000019832	lsm6	81	93.846	Acanthochromis_polyacanthus
ENSCAPG00000011179	-	100	96.923	ENSAMEG00000016671	LSM6	81	96.923	Ailuropoda_melanoleuca
ENSCAPG00000011179	-	100	93.846	ENSACIG00000016711	lsm6	81	93.846	Amphilophus_citrinellus
ENSCAPG00000011179	-	100	93.846	ENSAPEG00000023992	lsm6	86	93.846	Amphiprion_percula
ENSCAPG00000011179	-	100	93.846	ENSATEG00000012610	lsm6	81	93.846	Anabas_testudineus
ENSCAPG00000011179	-	95	96.774	ENSAPLG00000012594	LSM6	79	96.774	Anas_platyrhynchos
ENSCAPG00000011179	-	100	96.923	ENSACAG00000004004	LSM6	81	96.923	Anolis_carolinensis
ENSCAPG00000011179	-	100	87.692	ENSANAG00000021839	-	87	87.692	Aotus_nancymaae
ENSCAPG00000011179	-	100	96.923	ENSANAG00000030568	-	81	96.923	Aotus_nancymaae
ENSCAPG00000011179	-	100	93.846	ENSACLG00000025621	lsm6	81	93.846	Astatotilapia_calliptera
ENSCAPG00000011179	-	100	93.846	ENSAMXG00000038738	lsm6	81	93.846	Astyanax_mexicanus
ENSCAPG00000011179	-	100	96.923	ENSBTAG00000014060	LSM6	81	96.923	Bos_taurus
ENSCAPG00000011179	-	100	90.769	ENSBTAG00000052085	-	81	90.769	Bos_taurus
ENSCAPG00000011179	-	95	79.032	WBGene00003080	lsm-6	81	79.032	Caenorhabditis_elegans
ENSCAPG00000011179	-	100	96.923	ENSCJAG00000002482	LSM6	81	96.923	Callithrix_jacchus
ENSCAPG00000011179	-	100	96.923	ENSCAFG00000007738	LSM6	81	96.923	Canis_familiaris
ENSCAPG00000011179	-	100	96.923	ENSCAFG00020025902	LSM6	81	96.923	Canis_lupus_dingo
ENSCAPG00000011179	-	100	96.923	ENSCHIG00000010334	-	81	96.923	Capra_hircus
ENSCAPG00000011179	-	100	78.462	ENSCHIG00000024198	-	75	78.462	Capra_hircus
ENSCAPG00000011179	-	100	96.923	ENSCHIG00000012864	-	92	96.923	Capra_hircus
ENSCAPG00000011179	-	92	88.333	ENSTSYG00000012759	-	79	88.333	Carlito_syrichta
ENSCAPG00000011179	-	100	96.923	ENSTSYG00000026972	LSM6	81	96.923	Carlito_syrichta
ENSCAPG00000011179	-	100	96.923	ENSCPOG00000032655	LSM6	81	96.923	Cavia_porcellus
ENSCAPG00000011179	-	100	95.385	ENSCCAG00000020665	-	81	95.385	Cebus_capucinus
ENSCAPG00000011179	-	100	96.923	ENSCCAG00000036437	LSM6	81	96.923	Cebus_capucinus
ENSCAPG00000011179	-	100	96.923	ENSCATG00000002770	-	81	96.923	Cercocebus_atys
ENSCAPG00000011179	-	94	81.967	ENSCATG00000038799	-	80	81.967	Cercocebus_atys
ENSCAPG00000011179	-	100	96.923	ENSCLAG00000005495	LSM6	81	96.923	Chinchilla_lanigera
ENSCAPG00000011179	-	100	76.923	ENSCLAG00000005685	-	91	76.923	Chinchilla_lanigera
ENSCAPG00000011179	-	100	96.923	ENSCSAG00000003421	LSM6	81	96.923	Chlorocebus_sabaeus
ENSCAPG00000011179	-	82	98.113	ENSCHOG00000003420	LSM6	84	98.113	Choloepus_hoffmanni
ENSCAPG00000011179	-	100	96.923	ENSCPBG00000027472	LSM6	68	96.923	Chrysemys_picta_bellii
ENSCAPG00000011179	-	95	95.161	ENSCING00000019152	-	76	95.161	Ciona_intestinalis
ENSCAPG00000011179	-	95	96.774	ENSCSAVG00000002065	-	76	96.774	Ciona_savignyi
ENSCAPG00000011179	-	100	96.923	ENSCANG00000041263	-	81	96.923	Colobus_angolensis_palliatus
ENSCAPG00000011179	-	100	96.923	ENSCANG00000006849	-	81	96.923	Colobus_angolensis_palliatus
ENSCAPG00000011179	-	94	80.328	ENSCANG00000035214	-	80	80.328	Colobus_angolensis_palliatus
ENSCAPG00000011179	-	100	96.923	ENSCGRG00001017142	Lsm6	81	96.923	Cricetulus_griseus_chok1gshd
ENSCAPG00000011179	-	100	96.923	ENSCGRG00000008320	Lsm6	81	96.923	Cricetulus_griseus_crigri
ENSCAPG00000011179	-	100	93.846	ENSCSEG00000000423	lsm6	81	93.846	Cynoglossus_semilaevis
ENSCAPG00000011179	-	100	93.846	ENSCVAG00000001592	lsm6	81	93.846	Cyprinodon_variegatus
ENSCAPG00000011179	-	100	93.846	ENSDARG00000036995	lsm6	81	93.846	Danio_rerio
ENSCAPG00000011179	-	100	98.462	ENSDNOG00000044848	-	81	98.462	Dasypus_novemcinctus
ENSCAPG00000011179	-	100	96.923	ENSDNOG00000040186	-	70	96.923	Dasypus_novemcinctus
ENSCAPG00000011179	-	100	96.923	ENSDORG00000000933	Lsm6	81	96.923	Dipodomys_ordii
ENSCAPG00000011179	-	95	80.645	FBgn0034564	CG9344	78	80.645	Drosophila_melanogaster
ENSCAPG00000011179	-	51	93.939	ENSETEG00000013098	LSM6	69	93.939	Echinops_telfairi
ENSCAPG00000011179	-	100	96.923	ENSEBUG00000017073	lsm6	81	96.923	Eptatretus_burgeri
ENSCAPG00000011179	-	100	96.923	ENSEASG00005001533	LSM6	68	96.923	Equus_asinus_asinus
ENSCAPG00000011179	-	100	96.923	ENSECAG00000021036	LSM6	81	96.923	Equus_caballus
ENSCAPG00000011179	-	98	62.500	ENSEEUG00000002101	LSM6	81	62.500	Erinaceus_europaeus
ENSCAPG00000011179	-	100	93.846	ENSELUG00000014301	LSM6	81	93.846	Esox_lucius
ENSCAPG00000011179	-	100	96.923	ENSFCAG00000003047	LSM6	81	96.923	Felis_catus
ENSCAPG00000011179	-	100	96.923	ENSFALG00000005509	LSM6	75	96.923	Ficedula_albicollis
ENSCAPG00000011179	-	98	89.062	ENSFDAG00000019073	-	80	89.062	Fukomys_damarensis
ENSCAPG00000011179	-	100	96.923	ENSFDAG00000020913	-	81	96.923	Fukomys_damarensis
ENSCAPG00000011179	-	100	93.846	ENSFHEG00000007948	lsm6	87	93.846	Fundulus_heteroclitus
ENSCAPG00000011179	-	100	93.846	ENSGMOG00000015550	lsm6	81	93.846	Gadus_morhua
ENSCAPG00000011179	-	100	96.923	ENSGALG00000009985	LSM6	81	96.923	Gallus_gallus
ENSCAPG00000011179	-	100	93.846	ENSGAFG00000017763	lsm6	81	93.846	Gambusia_affinis
ENSCAPG00000011179	-	100	93.846	ENSGACG00000017223	lsm6	81	93.846	Gasterosteus_aculeatus
ENSCAPG00000011179	-	100	96.923	ENSGAGG00000020980	LSM6	81	96.923	Gopherus_agassizii
ENSCAPG00000011179	-	100	96.923	ENSGGOG00000001310	LSM6	81	96.923	Gorilla_gorilla
ENSCAPG00000011179	-	100	93.846	ENSHBUG00000008618	lsm6	81	93.846	Haplochromis_burtoni
ENSCAPG00000011179	-	100	96.923	ENSHGLG00000000205	LSM6	81	96.923	Heterocephalus_glaber_female
ENSCAPG00000011179	-	100	96.923	ENSHGLG00100014341	LSM6	81	96.923	Heterocephalus_glaber_male
ENSCAPG00000011179	-	100	93.846	ENSHCOG00000005591	lsm6	81	93.846	Hippocampus_comes
ENSCAPG00000011179	-	100	92.308	ENSIPUG00000004508	lsm6	81	92.308	Ictalurus_punctatus
ENSCAPG00000011179	-	100	96.923	ENSSTOG00000002678	LSM6	81	96.923	Ictidomys_tridecemlineatus
ENSCAPG00000011179	-	94	73.770	ENSJJAG00000016942	-	75	73.770	Jaculus_jaculus
ENSCAPG00000011179	-	100	96.923	ENSJJAG00000013845	-	81	96.923	Jaculus_jaculus
ENSCAPG00000011179	-	100	87.692	ENSJJAG00000011211	-	81	87.692	Jaculus_jaculus
ENSCAPG00000011179	-	100	93.846	ENSKMAG00000004105	lsm6	81	93.846	Kryptolebias_marmoratus
ENSCAPG00000011179	-	100	93.846	ENSLBEG00000018441	lsm6	81	93.846	Labrus_bergylta
ENSCAPG00000011179	-	100	96.923	ENSLACG00000006937	LSM6	81	96.923	Latimeria_chalumnae
ENSCAPG00000011179	-	100	92.308	ENSLOCG00000017683	-	81	92.308	Lepisosteus_oculatus
ENSCAPG00000011179	-	100	93.846	ENSLOCG00000008852	lsm6	81	93.846	Lepisosteus_oculatus
ENSCAPG00000011179	-	100	96.923	ENSLAFG00000001952	LSM6	81	96.923	Loxodonta_africana
ENSCAPG00000011179	-	100	96.923	ENSMFAG00000033073	LSM6	81	96.923	Macaca_fascicularis
ENSCAPG00000011179	-	94	83.607	ENSMNEG00000040412	-	80	83.607	Macaca_nemestrina
ENSCAPG00000011179	-	100	96.923	ENSMNEG00000034820	-	81	96.923	Macaca_nemestrina
ENSCAPG00000011179	-	100	96.923	ENSMLEG00000035153	LSM6	81	96.923	Mandrillus_leucophaeus
ENSCAPG00000011179	-	100	93.846	ENSMAMG00000014029	lsm6	81	93.846	Mastacembelus_armatus
ENSCAPG00000011179	-	100	93.846	ENSMZEG00005009146	lsm6	81	93.846	Maylandia_zebra
ENSCAPG00000011179	-	100	96.923	ENSMGAG00000003802	LSM6	81	96.923	Meleagris_gallopavo
ENSCAPG00000011179	-	100	96.923	ENSMAUG00000014938	Lsm6	81	96.923	Mesocricetus_auratus
ENSCAPG00000011179	-	100	96.923	ENSMICG00000047411	-	76	96.923	Microcebus_murinus
ENSCAPG00000011179	-	100	96.923	ENSMICG00000042599	LSM6	81	96.923	Microcebus_murinus
ENSCAPG00000011179	-	100	96.923	ENSMOCG00000020049	Lsm6	81	96.923	Microtus_ochrogaster
ENSCAPG00000011179	-	100	93.846	ENSMMOG00000005470	lsm6	81	93.846	Mola_mola
ENSCAPG00000011179	-	100	89.231	ENSMMOG00000007379	-	82	89.231	Mola_mola
ENSCAPG00000011179	-	100	96.923	ENSMODG00000000526	LSM6	81	96.923	Monodelphis_domestica
ENSCAPG00000011179	-	100	93.846	ENSMALG00000002419	lsm6	81	93.846	Monopterus_albus
ENSCAPG00000011179	-	100	96.923	MGP_CAROLIEiJ_G0031245	Lsm6	81	96.923	Mus_caroli
ENSCAPG00000011179	-	100	96.923	ENSMUSG00000031683	Lsm6	81	96.923	Mus_musculus
ENSCAPG00000011179	-	100	96.923	MGP_PahariEiJ_G0022851	Lsm6	81	96.923	Mus_pahari
ENSCAPG00000011179	-	100	96.923	MGP_SPRETEiJ_G0032365	Lsm6	81	96.923	Mus_spretus
ENSCAPG00000011179	-	100	96.923	ENSMPUG00000006936	LSM6	76	96.923	Mustela_putorius_furo
ENSCAPG00000011179	-	100	96.923	ENSMLUG00000026355	LSM6	81	96.923	Myotis_lucifugus
ENSCAPG00000011179	-	100	96.923	ENSNGAG00000019116	Lsm6	81	96.923	Nannospalax_galili
ENSCAPG00000011179	-	100	93.846	ENSNBRG00000004887	lsm6	81	93.846	Neolamprologus_brichardi
ENSCAPG00000011179	-	100	96.923	ENSNLEG00000005584	LSM6	81	96.923	Nomascus_leucogenys
ENSCAPG00000011179	-	100	96.923	ENSOPRG00000011199	LSM6	82	96.923	Ochotona_princeps
ENSCAPG00000011179	-	100	95.385	ENSODEG00000020420	-	81	95.385	Octodon_degus
ENSCAPG00000011179	-	100	95.385	ENSODEG00000002307	-	81	95.385	Octodon_degus
ENSCAPG00000011179	-	100	95.385	ENSODEG00000019419	-	81	95.385	Octodon_degus
ENSCAPG00000011179	-	100	86.154	ENSODEG00000018684	-	84	86.154	Octodon_degus
ENSCAPG00000011179	-	100	93.846	ENSONIG00000010005	lsm6	81	93.846	Oreochromis_niloticus
ENSCAPG00000011179	-	97	65.079	ENSOANG00000006894	-	80	65.079	Ornithorhynchus_anatinus
ENSCAPG00000011179	-	97	65.079	ENSOANG00000006895	-	80	65.079	Ornithorhynchus_anatinus
ENSCAPG00000011179	-	100	92.308	ENSORLG00000024158	lsm6	81	92.308	Oryzias_latipes
ENSCAPG00000011179	-	100	92.308	ENSORLG00020017383	lsm6	81	92.308	Oryzias_latipes_hni
ENSCAPG00000011179	-	100	92.308	ENSORLG00015016903	lsm6	81	92.308	Oryzias_latipes_hsok
ENSCAPG00000011179	-	100	93.846	ENSOMEG00000000074	lsm6	81	93.846	Oryzias_melastigma
ENSCAPG00000011179	-	100	96.923	ENSOGAG00000026665	-	81	96.923	Otolemur_garnettii
ENSCAPG00000011179	-	100	96.923	ENSOGAG00000033153	-	81	96.923	Otolemur_garnettii
ENSCAPG00000011179	-	100	96.923	ENSOARG00000008509	-	83	96.923	Ovis_aries
ENSCAPG00000011179	-	100	89.231	ENSOARG00000011641	-	76	89.231	Ovis_aries
ENSCAPG00000011179	-	100	96.923	ENSPPAG00000037929	LSM6	81	96.923	Pan_paniscus
ENSCAPG00000011179	-	100	96.923	ENSPPRG00000012806	LSM6	81	96.923	Panthera_pardus
ENSCAPG00000011179	-	100	96.923	ENSPTIG00000019769	LSM6	81	96.923	Panthera_tigris_altaica
ENSCAPG00000011179	-	100	96.923	ENSPTRG00000016488	LSM6	81	96.923	Pan_troglodytes
ENSCAPG00000011179	-	100	96.923	ENSPANG00000006552	LSM6	81	96.923	Papio_anubis
ENSCAPG00000011179	-	100	93.846	ENSPKIG00000016176	lsm6	81	93.846	Paramormyrops_kingsleyae
ENSCAPG00000011179	-	100	96.923	ENSPSIG00000016942	LSM6	81	96.923	Pelodiscus_sinensis
ENSCAPG00000011179	-	100	93.846	ENSPMGG00000018004	lsm6	81	93.846	Periophthalmus_magnuspinnatus
ENSCAPG00000011179	-	100	96.923	ENSPEMG00000012410	Lsm6	81	96.923	Peromyscus_maniculatus_bairdii
ENSCAPG00000011179	-	100	96.923	ENSPMAG00000006949	lsm6	81	96.923	Petromyzon_marinus
ENSCAPG00000011179	-	100	96.923	ENSPCIG00000023469	LSM6	76	96.923	Phascolarctos_cinereus
ENSCAPG00000011179	-	100	93.846	ENSPFOG00000008881	lsm6	81	93.846	Poecilia_formosa
ENSCAPG00000011179	-	100	93.846	ENSPLAG00000003202	lsm6	81	93.846	Poecilia_latipinna
ENSCAPG00000011179	-	100	93.846	ENSPMEG00000004000	lsm6	81	93.846	Poecilia_mexicana
ENSCAPG00000011179	-	100	93.846	ENSPREG00000023235	lsm6	81	93.846	Poecilia_reticulata
ENSCAPG00000011179	-	100	96.923	ENSPPYG00000015105	LSM6	81	96.923	Pongo_abelii
ENSCAPG00000011179	-	100	96.923	ENSPCOG00000013899	LSM6	81	96.923	Propithecus_coquereli
ENSCAPG00000011179	-	100	93.846	ENSPNYG00000012614	lsm6	81	93.846	Pundamilia_nyererei
ENSCAPG00000011179	-	100	93.846	ENSPNAG00000018779	lsm6	81	93.846	Pygocentrus_nattereri
ENSCAPG00000011179	-	100	96.923	ENSRNOG00000049370	LOC100360750	81	96.923	Rattus_norvegicus
ENSCAPG00000011179	-	100	96.923	ENSRNOG00000030374	Lsm6	81	96.923	Rattus_norvegicus
ENSCAPG00000011179	-	100	96.923	ENSRBIG00000027878	LSM6	81	96.923	Rhinopithecus_bieti
ENSCAPG00000011179	-	100	96.923	ENSRROG00000024868	LSM6	81	96.923	Rhinopithecus_roxellana
ENSCAPG00000011179	-	77	47.059	YDR378C	-	72	45.161	Saccharomyces_cerevisiae
ENSCAPG00000011179	-	100	96.923	ENSSBOG00000021229	-	81	96.923	Saimiri_boliviensis_boliviensis
ENSCAPG00000011179	-	100	69.231	ENSSBOG00000028103	-	78	69.231	Saimiri_boliviensis_boliviensis
ENSCAPG00000011179	-	100	93.846	ENSSFOG00015016480	lsm6	81	93.846	Scleropages_formosus
ENSCAPG00000011179	-	100	93.846	ENSSMAG00000004550	lsm6	84	93.846	Scophthalmus_maximus
ENSCAPG00000011179	-	100	93.846	ENSSLDG00000004136	-	56	93.846	Seriola_lalandi_dorsalis
ENSCAPG00000011179	-	100	93.846	ENSSLDG00000020533	lsm6	68	93.846	Seriola_lalandi_dorsalis
ENSCAPG00000011179	-	51	93.939	ENSSARG00000000689	LSM6	69	93.939	Sorex_araneus
ENSCAPG00000011179	-	100	96.923	ENSSPUG00000008657	LSM6	81	96.923	Sphenodon_punctatus
ENSCAPG00000011179	-	100	93.846	ENSSPAG00000003246	lsm6	81	93.846	Stegastes_partitus
ENSCAPG00000011179	-	100	96.923	ENSSSCG00000035973	LSM6	81	96.923	Sus_scrofa
ENSCAPG00000011179	-	100	96.923	ENSTGUG00000002663	LSM6	81	96.923	Taeniopygia_guttata
ENSCAPG00000011179	-	100	93.846	ENSTRUG00000023398	lsm6	81	93.846	Takifugu_rubripes
ENSCAPG00000011179	-	100	93.846	ENSTNIG00000017725	lsm6	81	93.846	Tetraodon_nigroviridis
ENSCAPG00000011179	-	100	96.923	ENSTTRG00000004609	LSM6	81	96.923	Tursiops_truncatus
ENSCAPG00000011179	-	100	96.923	ENSUAMG00000014213	LSM6	53	96.923	Ursus_americanus
ENSCAPG00000011179	-	100	96.923	ENSUMAG00000015727	LSM6	53	96.923	Ursus_maritimus
ENSCAPG00000011179	-	100	96.923	ENSVPAG00000006922	LSM6	81	96.923	Vicugna_pacos
ENSCAPG00000011179	-	100	96.923	ENSVVUG00000009254	LSM6	56	96.923	Vulpes_vulpes
ENSCAPG00000011179	-	100	96.923	ENSXETG00000023683	lsm6	81	96.923	Xenopus_tropicalis
ENSCAPG00000011179	-	100	93.846	ENSXMAG00000009606	lsm6	84	93.846	Xiphophorus_maculatus