EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000012121 (Gene tree)
Gene ID: -
Gene Symbol: SAFB
Alias: HET|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 22878 bases
Position: chrAVPZ01000261.1:43229-66106
Accession: 10520
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000010986	RRM_5	PF13893.6	2.1e-06	1	1
ENSCAPP00000010986	RRM_1	PF00076.22	2.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000014722	SAFB-201	2307	-	ENSCAPP00000010986	768 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000012121's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000012121's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000012121	SAFB	99	57.746	ENSCAPG00000011771	SAFB2	97	57.971

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000012121	SAFB	77	83.557	ENSG00000160633	SAFB	93	71.542	Homo_sapiens
ENSCAPG00000012121	SAFB	74	58.392	ENSAPLG00000006355	-	83	49.932	Anas_platyrhynchos
ENSCAPG00000012121	SAFB	77	82.383	ENSANAG00000028821	SAFB	93	70.748	Aotus_nancymaae
ENSCAPG00000012121	SAFB	54	91.946	ENSCJAG00000017081	SAFB	81	90.086	Callithrix_jacchus
ENSCAPG00000012121	SAFB	100	97.980	ENSCPOG00000026322	SAFB	89	88.384	Cavia_porcellus
ENSCAPG00000012121	SAFB	77	82.412	ENSCCAG00000020193	SAFB	81	79.803	Cebus_capucinus
ENSCAPG00000012121	SAFB	77	83.557	ENSCATG00000029994	SAFB	93	71.655	Cercocebus_atys
ENSCAPG00000012121	SAFB	77	83.389	ENSCSAG00000009949	SAFB	93	71.542	Chlorocebus_sabaeus
ENSCAPG00000012121	SAFB	83	83.333	ENSCHOG00000003208	SAFB	85	88.095	Choloepus_hoffmanni
ENSCAPG00000012121	SAFB	94	59.901	ENSCPBG00000010936	-	85	59.901	Chrysemys_picta_bellii
ENSCAPG00000012121	SAFB	100	66.972	ENSCANG00000019754	-	93	68.578	Colobus_angolensis_palliatus
ENSCAPG00000012121	SAFB	100	81.258	ENSCANG00000004774	-	92	81.384	Colobus_angolensis_palliatus
ENSCAPG00000012121	SAFB	100	80.200	ENSCGRG00001002254	Safb	93	80.402	Cricetulus_griseus_chok1gshd
ENSCAPG00000012121	SAFB	96	79.397	ENSCGRG00000011529	Safb	96	80.402	Cricetulus_griseus_crigri
ENSCAPG00000012121	SAFB	77	83.893	ENSDNOG00000015746	SAFB	89	75.647	Dasypus_novemcinctus
ENSCAPG00000012121	SAFB	75	85.345	ENSDORG00000016200	Safb	62	85.166	Dipodomys_ordii
ENSCAPG00000012121	SAFB	86	70.073	ENSETEG00000018679	SAFB	72	86.854	Echinops_telfairi
ENSCAPG00000012121	SAFB	94	79.820	ENSEASG00005023019	SAFB	79	81.095	Equus_asinus_asinus
ENSCAPG00000012121	SAFB	77	82.383	ENSECAG00000018659	SAFB	63	73.820	Equus_caballus
ENSCAPG00000012121	SAFB	94	41.924	ENSELUG00000022327	safb	78	44.231	Esox_lucius
ENSCAPG00000012121	SAFB	94	55.825	ENSFALG00000013881	-	99	57.921	Ficedula_albicollis
ENSCAPG00000012121	SAFB	100	89.467	ENSFDAG00000020306	SAFB	92	89.207	Fukomys_damarensis
ENSCAPG00000012121	SAFB	97	59.406	ENSGALG00000001948	-	81	59.406	Gallus_gallus
ENSCAPG00000012121	SAFB	50	47.927	ENSGAGG00000017702	-	69	63.500	Gopherus_agassizii
ENSCAPG00000012121	SAFB	94	68.712	ENSGAGG00000008424	-	93	68.712	Gopherus_agassizii
ENSCAPG00000012121	SAFB	77	83.221	ENSGGOG00000015109	SAFB	93	71.315	Gorilla_gorilla
ENSCAPG00000012121	SAFB	100	89.533	ENSHGLG00100004228	SAFB	93	89.533	Heterocephalus_glaber_male
ENSCAPG00000012121	SAFB	55	53.846	ENSHCOG00000001705	safb	52	52.852	Hippocampus_comes
ENSCAPG00000012121	SAFB	100	88.067	ENSSTOG00000002783	SAFB	100	81.910	Ictidomys_tridecemlineatus
ENSCAPG00000012121	SAFB	74	47.157	ENSLACG00000018090	SAFB	83	48.259	Latimeria_chalumnae
ENSCAPG00000012121	SAFB	77	82.167	ENSLAFG00000003840	SAFB	93	65.904	Loxodonta_africana
ENSCAPG00000012121	SAFB	77	83.417	ENSMFAG00000003885	SAFB	81	79.957	Macaca_fascicularis
ENSCAPG00000012121	SAFB	77	83.557	ENSMMUG00000017970	SAFB	93	71.655	Macaca_mulatta
ENSCAPG00000012121	SAFB	77	77.722	ENSMNEG00000035637	SAFB	93	66.818	Macaca_nemestrina
ENSCAPG00000012121	SAFB	77	74.833	ENSMLEG00000038637	SAFB	93	59.596	Mandrillus_leucophaeus
ENSCAPG00000012121	SAFB	74	52.062	ENSMGAG00000001051	-	92	71.717	Meleagris_gallopavo
ENSCAPG00000012121	SAFB	76	71.747	ENSMICG00000046795	-	85	60.000	Microcebus_murinus
ENSCAPG00000012121	SAFB	100	80.066	ENSMOCG00000014040	Safb	93	79.397	Microtus_ochrogaster
ENSCAPG00000012121	SAFB	100	81.407	MGP_CAROLIEiJ_G0021780	Safb	93	81.407	Mus_caroli
ENSCAPG00000012121	SAFB	100	81.407	ENSMUSG00000071054	Safb	93	81.407	Mus_musculus
ENSCAPG00000012121	SAFB	100	84.021	ENSNGAG00000019882	Safb	93	85.052	Nannospalax_galili
ENSCAPG00000012121	SAFB	77	83.389	ENSNLEG00000013551	SAFB	79	83.851	Nomascus_leucogenys
ENSCAPG00000012121	SAFB	97	92.321	ENSODEG00000014838	SAFB	93	85.930	Octodon_degus
ENSCAPG00000012121	SAFB	97	69.412	ENSOCUG00000014628	SAFB	87	79.412	Oryctolagus_cuniculus
ENSCAPG00000012121	SAFB	77	78.655	ENSOARG00000007856	-	79	79.443	Ovis_aries
ENSCAPG00000012121	SAFB	77	83.250	ENSPPAG00000035129	SAFB	93	67.829	Pan_paniscus
ENSCAPG00000012121	SAFB	77	83.250	ENSPTRG00000010335	SAFB	93	67.905	Pan_troglodytes
ENSCAPG00000012121	SAFB	77	83.250	ENSPANG00000007770	SAFB	81	79.803	Papio_anubis
ENSCAPG00000012121	SAFB	100	63.819	ENSPSIG00000009367	-	81	63.819	Pelodiscus_sinensis
ENSCAPG00000012121	SAFB	97	60.396	ENSPSIG00000011679	-	86	60.396	Pelodiscus_sinensis
ENSCAPG00000012121	SAFB	100	80.532	ENSPEMG00000020428	Safb	93	79.899	Peromyscus_maniculatus_bairdii
ENSCAPG00000012121	SAFB	77	83.557	ENSPPYG00000009428	SAFB	93	71.542	Pongo_abelii
ENSCAPG00000012121	SAFB	75	77.951	ENSPCAG00000006475	SAFB	82	77.661	Procavia_capensis
ENSCAPG00000012121	SAFB	98	78.683	ENSPVAG00000004913	SAFB	82	78.571	Pteropus_vampyrus
ENSCAPG00000012121	SAFB	97	80.905	ENSRNOG00000050543	Safb	99	79.348	Rattus_norvegicus
ENSCAPG00000012121	SAFB	77	83.417	ENSRROG00000029278	SAFB	81	79.803	Rhinopithecus_roxellana
ENSCAPG00000012121	SAFB	77	82.550	ENSSBOG00000026291	SAFB	93	70.975	Saimiri_boliviensis_boliviensis
ENSCAPG00000012121	SAFB	86	63.580	ENSSPUG00000009820	-	84	63.580	Sphenodon_punctatus
ENSCAPG00000012121	SAFB	71	53.721	ENSSPUG00000009747	-	98	47.964	Sphenodon_punctatus
ENSCAPG00000012121	SAFB	77	82.702	ENSSSCG00000013522	SAFB	87	70.999	Sus_scrofa
ENSCAPG00000012121	SAFB	74	54.828	ENSTGUG00000000502	-	63	56.131	Taeniopygia_guttata
ENSCAPG00000012121	SAFB	91	71.739	ENSTGUG00000000489	-	93	71.739	Taeniopygia_guttata
ENSCAPG00000012121	SAFB	88	81.225	ENSTTRG00000013588	SAFB	74	81.113	Tursiops_truncatus
ENSCAPG00000012121	SAFB	100	74.318	ENSUMAG00000009734	SAFB	92	72.953	Ursus_maritimus
ENSCAPG00000012121	SAFB	69	90.717	ENSVPAG00000012043	SAFB	66	90.435	Vicugna_pacos
ENSCAPG00000012121	SAFB	93	52.258	ENSXETG00000008755	safb	80	52.258	Xenopus_tropicalis