EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000012608 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 6381 bases
Position: chrAVPZ01000009.1:574656-581036
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000011563	zf-C2H2	PF00096.26	1.1e-23	1	4
ENSCAPP00000011563	zf-C2H2	PF00096.26	1.1e-23	2	4
ENSCAPP00000011563	zf-C2H2	PF00096.26	1.1e-23	3	4
ENSCAPP00000011563	zf-C2H2	PF00096.26	1.1e-23	4	4
ENSCAPP00000011563	zf-met	PF12874.7	7.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000015307	-	669	-	ENSCAPP00000011563	222 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000012608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000012608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000012608	-	94	41.964	ENSCAPG00000017499	ZNF2	68	42.537
ENSCAPG00000012608	-	66	33.784	ENSCAPG00000013078	SNAI2	78	32.044
ENSCAPG00000012608	-	74	41.284	ENSCAPG00000000389	ZNF574	63	42.056
ENSCAPG00000012608	-	94	39.091	ENSCAPG00000009816	ZNF236	58	39.091
ENSCAPG00000012608	-	76	34.503	ENSCAPG00000009522	ZNF865	65	34.503
ENSCAPG00000012608	-	65	48.571	ENSCAPG00000006920	-	92	48.571
ENSCAPG00000012608	-	63	45.133	ENSCAPG00000016810	ZFP69	73	45.133
ENSCAPG00000012608	-	64	37.931	ENSCAPG00000005775	OVOL2	54	37.931
ENSCAPG00000012608	-	68	40.580	ENSCAPG00000015217	PRDM5	78	40.517
ENSCAPG00000012608	-	63	45.000	ENSCAPG00000013118	-	72	45.000
ENSCAPG00000012608	-	64	43.038	ENSCAPG00000016268	-	99	43.038
ENSCAPG00000012608	-	74	45.000	ENSCAPG00000003129	-	84	45.000
ENSCAPG00000012608	-	68	36.082	ENSCAPG00000012873	ZBTB6	62	35.780
ENSCAPG00000012608	-	64	43.038	ENSCAPG00000010404	GFI1B	54	42.991
ENSCAPG00000012608	-	69	35.461	ENSCAPG00000012228	ZBTB48	51	35.461
ENSCAPG00000012608	-	64	39.252	ENSCAPG00000004720	ZNF526	57	40.000
ENSCAPG00000012608	-	64	39.706	ENSCAPG00000000623	ZNF770	93	39.706
ENSCAPG00000012608	-	65	42.143	ENSCAPG00000007129	ZNF319	89	37.607
ENSCAPG00000012608	-	73	43.571	ENSCAPG00000002667	-	70	43.571
ENSCAPG00000012608	-	72	39.080	ENSCAPG00000014613	ZNF423	66	39.080

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000012608	-	100	98.649	ENSG00000126746	ZNF384	54	98.649	Homo_sapiens
ENSCAPG00000012608	-	100	67.442	ENSAPOG00000005130	znf384l	54	67.442	Acanthochromis_polyacanthus
ENSCAPG00000012608	-	100	97.748	ENSAMEG00000014121	ZNF384	53	97.748	Ailuropoda_melanoleuca
ENSCAPG00000012608	-	100	59.657	ENSACIG00000013508	ZNF384	51	64.356	Amphilophus_citrinellus
ENSCAPG00000012608	-	100	59.307	ENSACIG00000023513	znf384l	50	51.337	Amphilophus_citrinellus
ENSCAPG00000012608	-	98	61.187	ENSAOCG00000008769	znf384l	52	63.902	Amphiprion_ocellaris
ENSCAPG00000012608	-	98	61.187	ENSAPEG00000014757	znf384l	52	63.902	Amphiprion_percula
ENSCAPG00000012608	-	100	98.649	ENSANAG00000032088	ZNF384	57	98.649	Aotus_nancymaae
ENSCAPG00000012608	-	100	59.227	ENSACLG00000025353	ZNF384	54	63.285	Astatotilapia_calliptera
ENSCAPG00000012608	-	99	79.310	ENSAMXG00000032718	si:ch211-154o6.2	54	79.310	Astyanax_mexicanus
ENSCAPG00000012608	-	100	97.297	ENSBTAG00000017072	ZNF384	54	97.297	Bos_taurus
ENSCAPG00000012608	-	100	100.000	ENSCJAG00000007944	ZNF384	55	98.649	Callithrix_jacchus
ENSCAPG00000012608	-	100	98.198	ENSCAFG00000014740	ZNF384	54	98.198	Canis_familiaris
ENSCAPG00000012608	-	100	98.198	ENSCAFG00020002932	ZNF384	56	98.198	Canis_lupus_dingo
ENSCAPG00000012608	-	100	96.444	ENSCHIG00000012248	ZNF384	56	96.444	Capra_hircus
ENSCAPG00000012608	-	100	97.758	ENSTSYG00000003178	ZNF384	100	97.758	Carlito_syrichta
ENSCAPG00000012608	-	100	100.000	ENSCPOG00000012313	ZNF384	55	100.000	Cavia_porcellus
ENSCAPG00000012608	-	100	98.649	ENSCCAG00000032088	ZNF384	55	98.649	Cebus_capucinus
ENSCAPG00000012608	-	100	98.649	ENSCATG00000008991	ZNF384	55	98.649	Cercocebus_atys
ENSCAPG00000012608	-	100	99.099	ENSCLAG00000015550	ZNF384	55	99.099	Chinchilla_lanigera
ENSCAPG00000012608	-	100	98.649	ENSCSAG00000010379	ZNF384	54	98.649	Chlorocebus_sabaeus
ENSCAPG00000012608	-	91	93.069	ENSCHOG00000006697	ZNF384	51	93.069	Choloepus_hoffmanni
ENSCAPG00000012608	-	100	88.710	ENSCPBG00000027704	ZNF384	55	69.955	Chrysemys_picta_bellii
ENSCAPG00000012608	-	100	96.413	ENSCGRG00001013065	Zfp384	55	96.413	Cricetulus_griseus_chok1gshd
ENSCAPG00000012608	-	100	96.413	ENSCGRG00000015919	Zfp384	55	96.413	Cricetulus_griseus_crigri
ENSCAPG00000012608	-	85	66.667	ENSCSEG00000019134	znf384l	50	48.168	Cynoglossus_semilaevis
ENSCAPG00000012608	-	97	58.824	ENSCVAG00000022685	-	51	67.179	Cyprinodon_variegatus
ENSCAPG00000012608	-	100	69.767	ENSDARG00000001015	znf384l	64	69.767	Danio_rerio
ENSCAPG00000012608	-	100	98.198	ENSDNOG00000003936	ZNF384	54	98.198	Dasypus_novemcinctus
ENSCAPG00000012608	-	100	71.250	ENSELUG00000020479	znf384l	50	70.886	Esox_lucius
ENSCAPG00000012608	-	100	60.086	ENSELUG00000006251	ZNF384	57	60.086	Esox_lucius
ENSCAPG00000012608	-	100	98.198	ENSFCAG00000006882	ZNF384	54	98.198	Felis_catus
ENSCAPG00000012608	-	100	99.099	ENSFDAG00000007530	ZNF384	57	99.099	Fukomys_damarensis
ENSCAPG00000012608	-	100	59.657	ENSFHEG00000011373	ZNF384	53	63.768	Fundulus_heteroclitus
ENSCAPG00000012608	-	78	66.474	ENSGMOG00000015258	ZNF384	53	66.474	Gadus_morhua
ENSCAPG00000012608	-	100	98.649	ENSGGOG00000016048	ZNF384	55	98.649	Gorilla_gorilla
ENSCAPG00000012608	-	100	59.227	ENSHBUG00000016733	ZNF384	52	63.285	Haplochromis_burtoni
ENSCAPG00000012608	-	71	69.136	ENSHCOG00000001659	znf384l	54	52.941	Hippocampus_comes
ENSCAPG00000012608	-	81	67.500	ENSHCOG00000012508	-	55	67.500	Hippocampus_comes
ENSCAPG00000012608	-	100	97.748	ENSSTOG00000009902	ZNF384	56	97.748	Ictidomys_tridecemlineatus
ENSCAPG00000012608	-	100	68.182	ENSLACG00000010143	ZNF384	56	61.261	Latimeria_chalumnae
ENSCAPG00000012608	-	100	98.198	ENSLAFG00000008381	ZNF384	56	98.198	Loxodonta_africana
ENSCAPG00000012608	-	100	98.649	ENSMFAG00000037538	ZNF384	56	98.649	Macaca_fascicularis
ENSCAPG00000012608	-	100	98.649	ENSMMUG00000016990	ZNF384	62	98.649	Macaca_mulatta
ENSCAPG00000012608	-	100	98.649	ENSMNEG00000029452	ZNF384	55	98.649	Macaca_nemestrina
ENSCAPG00000012608	-	100	98.649	ENSMLEG00000027305	ZNF384	54	98.649	Mandrillus_leucophaeus
ENSCAPG00000012608	-	100	59.227	ENSMZEG00005018208	-	52	63.285	Maylandia_zebra
ENSCAPG00000012608	-	100	95.495	ENSMOCG00000022768	Zfp384	57	95.495	Microtus_ochrogaster
ENSCAPG00000012608	-	100	92.825	ENSMODG00000018105	ZNF384	54	92.825	Monodelphis_domestica
ENSCAPG00000012608	-	100	96.861	ENSMUSG00000038346	Zfp384	55	96.861	Mus_musculus
ENSCAPG00000012608	-	100	96.861	MGP_PahariEiJ_G0022625	Zfp384	55	96.861	Mus_pahari
ENSCAPG00000012608	-	100	98.649	ENSMPUG00000016838	ZNF384	54	98.649	Mustela_putorius_furo
ENSCAPG00000012608	-	100	97.758	ENSNGAG00000011316	Zfp384	55	97.758	Nannospalax_galili
ENSCAPG00000012608	-	100	59.227	ENSNBRG00000020830	-	52	63.285	Neolamprologus_brichardi
ENSCAPG00000012608	-	100	98.649	ENSNLEG00000004506	ZNF384	55	98.649	Nomascus_leucogenys
ENSCAPG00000012608	-	100	97.297	ENSOPRG00000003626	ZNF384	54	97.297	Ochotona_princeps
ENSCAPG00000012608	-	100	98.198	ENSODEG00000002585	ZNF384	56	98.198	Octodon_degus
ENSCAPG00000012608	-	100	60.000	ENSONIG00000004947	znf384l	54	60.000	Oreochromis_niloticus
ENSCAPG00000012608	-	100	63.319	ENSONIG00000013041	ZNF384	54	63.158	Oreochromis_niloticus
ENSCAPG00000012608	-	100	98.198	ENSOCUG00000003747	ZNF384	54	98.198	Oryctolagus_cuniculus
ENSCAPG00000012608	-	97	58.403	ENSORLG00000012835	ZNF384	52	65.347	Oryzias_latipes
ENSCAPG00000012608	-	97	58.403	ENSORLG00020003948	ZNF384	52	65.347	Oryzias_latipes_hni
ENSCAPG00000012608	-	97	58.403	ENSORLG00015009575	ZNF384	52	65.347	Oryzias_latipes_hsok
ENSCAPG00000012608	-	100	59.912	ENSOMEG00000001063	znf384l	68	75.316	Oryzias_melastigma
ENSCAPG00000012608	-	100	98.649	ENSOGAG00000010052	ZNF384	57	98.649	Otolemur_garnettii
ENSCAPG00000012608	-	100	98.649	ENSPPAG00000043539	ZNF384	55	98.649	Pan_paniscus
ENSCAPG00000012608	-	100	98.198	ENSPPRG00000006494	ZNF384	55	98.198	Panthera_pardus
ENSCAPG00000012608	-	100	98.198	ENSPTIG00000014865	ZNF384	55	98.198	Panthera_tigris_altaica
ENSCAPG00000012608	-	100	98.649	ENSPTRG00000004584	ZNF384	55	98.649	Pan_troglodytes
ENSCAPG00000012608	-	100	98.649	ENSPANG00000014845	ZNF384	55	98.649	Papio_anubis
ENSCAPG00000012608	-	100	96.396	ENSPEMG00000016282	Zfp384	55	96.396	Peromyscus_maniculatus_bairdii
ENSCAPG00000012608	-	100	92.377	ENSPCIG00000001942	ZNF384	57	92.377	Phascolarctos_cinereus
ENSCAPG00000012608	-	100	67.442	ENSPFOG00000015360	-	57	60.256	Poecilia_formosa
ENSCAPG00000012608	-	100	59.402	ENSPLAG00000003243	-	57	60.256	Poecilia_latipinna
ENSCAPG00000012608	-	100	59.402	ENSPMEG00000005010	-	57	60.256	Poecilia_mexicana
ENSCAPG00000012608	-	93	58.772	ENSPREG00000007875	znf384l	60	64.851	Poecilia_reticulata
ENSCAPG00000012608	-	100	98.649	ENSPPYG00000004196	ZNF384	54	98.649	Pongo_abelii
ENSCAPG00000012608	-	100	97.748	ENSPVAG00000011440	ZNF384	54	97.748	Pteropus_vampyrus
ENSCAPG00000012608	-	100	59.227	ENSPNYG00000022622	ZNF384	54	63.285	Pundamilia_nyererei
ENSCAPG00000012608	-	100	57.661	ENSPNAG00000010552	znf384l	51	58.197	Pygocentrus_nattereri
ENSCAPG00000012608	-	100	96.861	ENSRNOG00000017066	Zfp384	55	96.861	Rattus_norvegicus
ENSCAPG00000012608	-	100	98.649	ENSRBIG00000034371	ZNF384	55	98.649	Rhinopithecus_bieti
ENSCAPG00000012608	-	100	98.649	ENSRROG00000034990	ZNF384	55	98.649	Rhinopithecus_roxellana
ENSCAPG00000012608	-	100	98.649	ENSSBOG00000020182	ZNF384	54	98.649	Saimiri_boliviensis_boliviensis
ENSCAPG00000012608	-	100	92.377	ENSSHAG00000015330	ZNF384	55	92.377	Sarcophilus_harrisii
ENSCAPG00000012608	-	82	64.078	ENSSFOG00015023839	znf384l	53	64.078	Scleropages_formosus
ENSCAPG00000012608	-	100	70.238	ENSSLDG00000024533	-	51	70.238	Seriola_lalandi_dorsalis
ENSCAPG00000012608	-	98	61.187	ENSSPAG00000009256	znf384l	58	57.143	Stegastes_partitus
ENSCAPG00000012608	-	84	64.929	ENSSPAG00000017553	-	52	66.176	Stegastes_partitus
ENSCAPG00000012608	-	93	61.611	ENSTRUG00000011097	-	56	62.736	Takifugu_rubripes
ENSCAPG00000012608	-	100	63.839	ENSTNIG00000000726	znf384l	53	63.839	Tetraodon_nigroviridis
ENSCAPG00000012608	-	100	60.444	ENSTNIG00000008018	-	56	60.444	Tetraodon_nigroviridis
ENSCAPG00000012608	-	100	97.748	ENSTTRG00000011754	ZNF384	55	97.748	Tursiops_truncatus
ENSCAPG00000012608	-	100	97.297	ENSUAMG00000022892	ZNF384	55	97.297	Ursus_americanus
ENSCAPG00000012608	-	100	97.297	ENSUMAG00000005073	ZNF384	55	97.297	Ursus_maritimus
ENSCAPG00000012608	-	100	98.198	ENSVVUG00000011329	ZNF384	54	98.198	Vulpes_vulpes
ENSCAPG00000012608	-	84	63.158	ENSXCOG00000013504	znf384l	60	64.851	Xiphophorus_couchianus