EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000013736 (Gene tree)
Gene ID: -
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 8736 bases
Position: chrAVPZ01000067.1:41140430-41149165
Accession: 12651
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000013075	tRNA-synt_1g	PF09334.11	1.5e-12	1	1
ENSCAPP00000013072	tRNA-synt_1g	PF09334.11	1.7e-12	1	1
ENSCAPP00000013084	tRNA-synt_1g	PF09334.11	1.9e-11	1	1
ENSCAPP00000013091	tRNA-synt_1g	PF09334.11	1.9e-11	1	1
ENSCAPP00000013091	Anticodon_1	PF08264.13	4.5e-34	1	1
ENSCAPP00000013084	Anticodon_1	PF08264.13	4.7e-34	1	1
ENSCAPP00000013072	Anticodon_1	PF08264.13	4.9e-34	1	1
ENSCAPP00000013075	Anticodon_1	PF08264.13	4.9e-34	1	1
ENSCAPP00000013084	tRNA-synt_1	PF00133.22	2.2e-203	1	1
ENSCAPP00000013075	tRNA-synt_1	PF00133.22	2.8e-187	1	1
ENSCAPP00000013072	tRNA-synt_1	PF00133.22	3e-187	1	1
ENSCAPP00000013091	tRNA-synt_1	PF00133.22	2.7e-186	1	2
ENSCAPP00000013091	tRNA-synt_1	PF00133.22	2.7e-186	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000016835	VARS-202	3468	-	ENSCAPP00000013075	1155 (aa)	-	-
ENSCAPT00000016851	VARS-204	3234	-	ENSCAPP00000013091	1078 (aa)	-	-
ENSCAPT00000016832	VARS-201	3552	-	ENSCAPP00000013072	1183 (aa)	-	-
ENSCAPT00000016844	VARS-203	3480	-	ENSCAPP00000013084	1159 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000013736's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000013736's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000013736	VARS	81	51.732	ENSCAPG00000017770	VARS2	98	52.309

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000013736	VARS	99	90.398	ENSG00000204394	VARS	91	90.398	Homo_sapiens
ENSCAPG00000013736	VARS	96	67.327	ENSAPOG00000020921	vars	87	69.677	Acanthochromis_polyacanthus
ENSCAPG00000013736	VARS	96	67.327	ENSAPOG00000020691	vars	87	69.677	Acanthochromis_polyacanthus
ENSCAPG00000013736	VARS	99	90.493	ENSAMEG00000006417	VARS	91	90.493	Ailuropoda_melanoleuca
ENSCAPG00000013736	VARS	98	68.233	ENSACIG00000013752	vars	91	68.380	Amphilophus_citrinellus
ENSCAPG00000013736	VARS	98	67.444	ENSAOCG00000002447	vars	91	67.164	Amphiprion_ocellaris
ENSCAPG00000013736	VARS	98	67.444	ENSAPEG00000010638	vars	90	67.761	Amphiprion_percula
ENSCAPG00000013736	VARS	98	67.456	ENSATEG00000020219	vars	91	67.456	Anabas_testudineus
ENSCAPG00000013736	VARS	87	73.679	ENSACAG00000029133	-	89	73.973	Anolis_carolinensis
ENSCAPG00000013736	VARS	99	91.240	ENSANAG00000015453	VARS	91	91.240	Aotus_nancymaae
ENSCAPG00000013736	VARS	98	67.786	ENSACLG00000025699	vars	87	67.931	Astatotilapia_calliptera
ENSCAPG00000013736	VARS	92	69.504	ENSAMXG00000017716	vars	86	69.691	Astyanax_mexicanus
ENSCAPG00000013736	VARS	99	90.744	ENSBTAG00000005631	VARS	91	90.744	Bos_taurus
ENSCAPG00000013736	VARS	99	90.830	ENSCJAG00000002604	VARS	91	90.830	Callithrix_jacchus
ENSCAPG00000013736	VARS	99	89.965	ENSCAFG00000000636	VARS	91	89.965	Canis_familiaris
ENSCAPG00000013736	VARS	93	90.242	ENSCAFG00020020790	VARS	87	90.242	Canis_lupus_dingo
ENSCAPG00000013736	VARS	99	90.830	ENSCHIG00000011008	VARS	91	90.830	Capra_hircus
ENSCAPG00000013736	VARS	99	90.917	ENSTSYG00000001567	VARS	91	90.917	Carlito_syrichta
ENSCAPG00000013736	VARS	100	99.722	ENSCPOG00000000870	VARS	91	98.529	Cavia_porcellus
ENSCAPG00000013736	VARS	99	91.067	ENSCCAG00000035656	VARS	100	91.791	Cebus_capucinus
ENSCAPG00000013736	VARS	99	90.571	ENSCATG00000022394	VARS	100	88.698	Cercocebus_atys
ENSCAPG00000013736	VARS	98	91.065	ENSCLAG00000009470	VARS	94	91.065	Chinchilla_lanigera
ENSCAPG00000013736	VARS	99	90.571	ENSCSAG00000008784	VARS	91	90.571	Chlorocebus_sabaeus
ENSCAPG00000013736	VARS	84	74.025	ENSCPBG00000007943	VARS	96	74.230	Chrysemys_picta_bellii
ENSCAPG00000013736	VARS	99	90.917	ENSCANG00000033570	VARS	91	90.917	Colobus_angolensis_palliatus
ENSCAPG00000013736	VARS	99	90.052	ENSCGRG00001005686	Vars	91	90.052	Cricetulus_griseus_chok1gshd
ENSCAPG00000013736	VARS	99	85.076	ENSCGRG00000013352	Vars	76	86.403	Cricetulus_griseus_crigri
ENSCAPG00000013736	VARS	98	67.282	ENSCSEG00000019652	vars	90	67.634	Cynoglossus_semilaevis
ENSCAPG00000013736	VARS	98	67.897	ENSCVAG00000022398	vars	91	68.322	Cyprinodon_variegatus
ENSCAPG00000013736	VARS	98	68.103	ENSDARG00000044575	vars	91	68.335	Danio_rerio
ENSCAPG00000013736	VARS	92	91.533	ENSDORG00000016433	Vars	95	91.533	Dipodomys_ordii
ENSCAPG00000013736	VARS	75	86.232	ENSETEG00000003824	VARS	76	86.232	Echinops_telfairi
ENSCAPG00000013736	VARS	57	70.780	ENSEBUG00000007086	vars	84	69.808	Eptatretus_burgeri
ENSCAPG00000013736	VARS	65	62.659	ENSEBUG00000004637	vars	100	62.500	Eptatretus_burgeri
ENSCAPG00000013736	VARS	99	91.176	ENSEASG00005015673	VARS	91	91.176	Equus_asinus_asinus
ENSCAPG00000013736	VARS	99	90.493	ENSECAG00000014620	VARS	91	91.098	Equus_caballus
ENSCAPG00000013736	VARS	79	86.617	ENSEEUG00000004116	VARS	74	87.981	Erinaceus_europaeus
ENSCAPG00000013736	VARS	98	66.781	ENSELUG00000006550	vars	88	66.982	Esox_lucius
ENSCAPG00000013736	VARS	99	90.311	ENSFCAG00000004510	VARS	91	90.311	Felis_catus
ENSCAPG00000013736	VARS	88	91.736	ENSFDAG00000011401	VARS	98	91.736	Fukomys_damarensis
ENSCAPG00000013736	VARS	98	68.307	ENSFHEG00000010672	vars	91	68.734	Fundulus_heteroclitus
ENSCAPG00000013736	VARS	98	66.209	ENSGMOG00000014908	vars	94	66.781	Gadus_morhua
ENSCAPG00000013736	VARS	98	68.253	ENSGAFG00000021630	vars	91	68.566	Gambusia_affinis
ENSCAPG00000013736	VARS	98	66.926	ENSGACG00000009601	vars	95	67.155	Gasterosteus_aculeatus
ENSCAPG00000013736	VARS	99	90.657	ENSGGOG00000011364	VARS	91	90.657	Gorilla_gorilla
ENSCAPG00000013736	VARS	98	67.900	ENSHBUG00000017151	vars	87	68.045	Haplochromis_burtoni
ENSCAPG00000013736	VARS	99	90.138	ENSHGLG00000011646	VARS	91	90.225	Heterocephalus_glaber_female
ENSCAPG00000013736	VARS	99	82.218	ENSHGLG00100018062	VARS	98	82.218	Heterocephalus_glaber_male
ENSCAPG00000013736	VARS	98	67.703	ENSHCOG00000012198	vars	91	68.021	Hippocampus_comes
ENSCAPG00000013736	VARS	98	68.080	ENSIPUG00000005218	vars	91	68.080	Ictalurus_punctatus
ENSCAPG00000013736	VARS	99	91.530	ENSSTOG00000013112	VARS	91	91.530	Ictidomys_tridecemlineatus
ENSCAPG00000013736	VARS	99	74.048	ENSJJAG00000015343	-	94	73.962	Jaculus_jaculus
ENSCAPG00000013736	VARS	99	89.100	ENSJJAG00000019749	-	91	89.187	Jaculus_jaculus
ENSCAPG00000013736	VARS	99	67.186	ENSKMAG00000009455	vars	91	67.273	Kryptolebias_marmoratus
ENSCAPG00000013736	VARS	95	69.538	ENSLBEG00000010341	vars	90	67.551	Labrus_bergylta
ENSCAPG00000013736	VARS	91	65.804	ENSLACG00000015232	VARS	89	65.896	Latimeria_chalumnae
ENSCAPG00000013736	VARS	98	69.391	ENSLOCG00000004240	vars	91	69.679	Lepisosteus_oculatus
ENSCAPG00000013736	VARS	99	89.273	ENSLAFG00000023090	VARS	91	89.619	Loxodonta_africana
ENSCAPG00000013736	VARS	99	90.571	ENSMFAG00000001032	VARS	91	90.571	Macaca_fascicularis
ENSCAPG00000013736	VARS	99	90.571	ENSMMUG00000006828	VARS	91	90.571	Macaca_mulatta
ENSCAPG00000013736	VARS	99	90.571	ENSMNEG00000042072	VARS	91	90.571	Macaca_nemestrina
ENSCAPG00000013736	VARS	99	90.484	ENSMLEG00000039307	VARS	91	90.484	Mandrillus_leucophaeus
ENSCAPG00000013736	VARS	97	68.352	ENSMAMG00000003949	vars	90	68.842	Mastacembelus_armatus
ENSCAPG00000013736	VARS	98	67.900	ENSMZEG00005018327	vars	91	66.901	Maylandia_zebra
ENSCAPG00000013736	VARS	99	90.138	ENSMAUG00000006715	Vars	91	90.138	Mesocricetus_auratus
ENSCAPG00000013736	VARS	99	90.657	ENSMICG00000003548	VARS	100	92.289	Microcebus_murinus
ENSCAPG00000013736	VARS	95	90.719	ENSMOCG00000015404	Vars	89	90.992	Microtus_ochrogaster
ENSCAPG00000013736	VARS	98	67.045	ENSMMOG00000015801	vars	90	67.133	Mola_mola
ENSCAPG00000013736	VARS	99	84.775	ENSMODG00000015204	-	95	80.782	Monodelphis_domestica
ENSCAPG00000013736	VARS	98	68.072	ENSMALG00000022532	vars	91	68.217	Monopterus_albus
ENSCAPG00000013736	VARS	99	90.657	MGP_CAROLIEiJ_G0021491	Vars	91	91.003	Mus_caroli
ENSCAPG00000013736	VARS	99	90.571	ENSMUSG00000007029	Vars	91	90.917	Mus_musculus
ENSCAPG00000013736	VARS	99	90.484	MGP_PahariEiJ_G0020486	Vars	91	90.484	Mus_pahari
ENSCAPG00000013736	VARS	99	90.657	MGP_SPRETEiJ_G0022396	Vars	91	91.003	Mus_spretus
ENSCAPG00000013736	VARS	99	90.311	ENSMPUG00000010821	VARS	91	90.311	Mustela_putorius_furo
ENSCAPG00000013736	VARS	76	89.545	ENSMLUG00000013126	VARS	89	89.545	Myotis_lucifugus
ENSCAPG00000013736	VARS	99	90.138	ENSNGAG00000012151	Vars	91	90.571	Nannospalax_galili
ENSCAPG00000013736	VARS	98	67.642	ENSNBRG00000020520	vars	91	67.786	Neolamprologus_brichardi
ENSCAPG00000013736	VARS	99	89.965	ENSNLEG00000006351	VARS	100	87.136	Nomascus_leucogenys
ENSCAPG00000013736	VARS	99	81.574	ENSMEUG00000011378	VARS	95	77.787	Notamacropus_eugenii
ENSCAPG00000013736	VARS	99	91.090	ENSOPRG00000003607	VARS	91	91.090	Ochotona_princeps
ENSCAPG00000013736	VARS	99	92.301	ENSODEG00000017681	VARS	91	92.301	Octodon_degus
ENSCAPG00000013736	VARS	98	68.087	ENSONIG00000013064	vars	99	68.343	Oreochromis_niloticus
ENSCAPG00000013736	VARS	75	81.310	ENSOANG00000005400	VARS	90	81.310	Ornithorhynchus_anatinus
ENSCAPG00000013736	VARS	99	88.515	ENSOCUG00000022463	VARS	91	88.515	Oryctolagus_cuniculus
ENSCAPG00000013736	VARS	98	68.120	ENSORLG00000013063	vars	91	68.263	Oryzias_latipes
ENSCAPG00000013736	VARS	98	68.648	ENSORLG00020003504	vars	91	68.874	Oryzias_latipes_hni
ENSCAPG00000013736	VARS	98	68.621	ENSORLG00015009001	vars	91	68.847	Oryzias_latipes_hsok
ENSCAPG00000013736	VARS	97	68.544	ENSOMEG00000015016	vars	90	68.858	Oryzias_melastigma
ENSCAPG00000013736	VARS	99	90.311	ENSOGAG00000007515	VARS	91	90.311	Otolemur_garnettii
ENSCAPG00000013736	VARS	99	90.571	ENSPPAG00000034012	VARS	91	90.571	Pan_paniscus
ENSCAPG00000013736	VARS	99	90.398	ENSPPRG00000014855	VARS	91	90.398	Panthera_pardus
ENSCAPG00000013736	VARS	89	92.189	ENSPTIG00000010462	VARS	91	92.146	Panthera_tigris_altaica
ENSCAPG00000013736	VARS	99	90.657	ENSPTRG00000017985	VARS	91	90.657	Pan_troglodytes
ENSCAPG00000013736	VARS	99	88.707	ENSPANG00000014565	VARS	91	88.707	Papio_anubis
ENSCAPG00000013736	VARS	98	67.068	ENSPKIG00000016304	vars	90	67.296	Paramormyrops_kingsleyae
ENSCAPG00000013736	VARS	98	68.596	ENSPMGG00000023909	vars	91	68.947	Periophthalmus_magnuspinnatus
ENSCAPG00000013736	VARS	99	90.830	ENSPEMG00000006639	Vars	91	90.830	Peromyscus_maniculatus_bairdii
ENSCAPG00000013736	VARS	99	84.602	ENSPCIG00000018553	VARS	95	80.699	Phascolarctos_cinereus
ENSCAPG00000013736	VARS	98	68.426	ENSPFOG00000015690	vars	91	68.739	Poecilia_formosa
ENSCAPG00000013736	VARS	98	68.674	ENSPLAG00000009590	vars	91	68.826	Poecilia_latipinna
ENSCAPG00000013736	VARS	98	68.426	ENSPMEG00000004708	vars	91	68.739	Poecilia_mexicana
ENSCAPG00000013736	VARS	98	66.084	ENSPREG00000013264	vars	91	66.084	Poecilia_reticulata
ENSCAPG00000013736	VARS	99	88.668	ENSPPYG00000016460	VARS	91	88.668	Pongo_abelii
ENSCAPG00000013736	VARS	84	88.689	ENSPCAG00000013565	VARS	77	88.689	Procavia_capensis
ENSCAPG00000013736	VARS	99	90.493	ENSPCOG00000010942	VARS	91	91.098	Propithecus_coquereli
ENSCAPG00000013736	VARS	99	86.678	ENSPVAG00000012403	VARS	91	86.678	Pteropus_vampyrus
ENSCAPG00000013736	VARS	98	67.900	ENSPNYG00000022511	vars	91	68.045	Pundamilia_nyererei
ENSCAPG00000013736	VARS	97	68.517	ENSPNAG00000020962	vars	90	68.852	Pygocentrus_nattereri
ENSCAPG00000013736	VARS	99	91.263	ENSRNOG00000000867	Vars	91	91.263	Rattus_norvegicus
ENSCAPG00000013736	VARS	99	90.657	ENSRBIG00000041669	VARS	100	88.943	Rhinopithecus_bieti
ENSCAPG00000013736	VARS	99	90.657	ENSRROG00000045490	VARS	91	90.657	Rhinopithecus_roxellana
ENSCAPG00000013736	VARS	99	90.830	ENSSBOG00000035402	VARS	91	90.830	Saimiri_boliviensis_boliviensis
ENSCAPG00000013736	VARS	98	84.811	ENSSHAG00000006937	VARS	90	84.811	Sarcophilus_harrisii
ENSCAPG00000013736	VARS	98	68.127	ENSSFOG00015014272	vars	91	68.209	Scleropages_formosus
ENSCAPG00000013736	VARS	98	66.466	ENSSMAG00000009596	vars	90	66.867	Scophthalmus_maximus
ENSCAPG00000013736	VARS	98	67.670	ENSSDUG00000014177	vars	91	67.814	Seriola_dumerili
ENSCAPG00000013736	VARS	98	67.412	ENSSLDG00000025316	vars	91	67.556	Seriola_lalandi_dorsalis
ENSCAPG00000013736	VARS	98	67.530	ENSSPAG00000017068	vars	91	67.848	Stegastes_partitus
ENSCAPG00000013736	VARS	99	89.283	ENSSSCG00000038950	VARS	91	89.888	Sus_scrofa
ENSCAPG00000013736	VARS	78	68.660	ENSTRUG00000012307	vars	85	68.688	Takifugu_rubripes
ENSCAPG00000013736	VARS	98	67.916	ENSTNIG00000008011	vars	95	67.416	Tetraodon_nigroviridis
ENSCAPG00000013736	VARS	92	91.995	ENSTTRG00000014128	VARS	91	82.266	Tursiops_truncatus
ENSCAPG00000013736	VARS	98	88.101	ENSUAMG00000010424	VARS	90	88.101	Ursus_americanus
ENSCAPG00000013736	VARS	92	88.697	ENSUMAG00000013486	VARS	88	88.889	Ursus_maritimus
ENSCAPG00000013736	VARS	98	90.765	ENSVVUG00000021323	VARS	90	90.853	Vulpes_vulpes
ENSCAPG00000013736	VARS	98	64.533	ENSXETG00000024076	vars	92	64.502	Xenopus_tropicalis
ENSCAPG00000013736	VARS	98	68.389	ENSXCOG00000019172	vars	91	68.706	Xiphophorus_couchianus
ENSCAPG00000013736	VARS	98	67.993	ENSXMAG00000010927	vars	91	68.307	Xiphophorus_maculatus