EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000013881 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 9145 bases
Position: chrAVPZ01000234.1:5431863-5441007
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000013206	zf-CCCH	PF00642.24	2.6e-18	1	2
ENSCAPP00000013206	zf-CCCH	PF00642.24	2.6e-18	2	2
ENSCAPP00000013209	zf-CCCH	PF00642.24	1.3e-13	1	2
ENSCAPP00000013209	zf-CCCH	PF00642.24	1.3e-13	2	2
ENSCAPP00000013209	zf-CCHC	PF00098.23	1.8e-06	1	1
ENSCAPP00000013206	zf-CCHC	PF00098.23	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000016969	CPSF4-202	585	-	ENSCAPP00000013209	194 (aa)	-	-
ENSCAPT00000016966	CPSF4-201	759	-	ENSCAPP00000013206	252 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000013881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000013881's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000013881	CPSF4	87	99.083	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSCAPG00000013881	CPSF4	72	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSCAPG00000013881	CPSF4	87	100.000	ENSAMEG00000006252	CPSF4	81	100.000	Ailuropoda_melanoleuca
ENSCAPG00000013881	CPSF4	87	77.523	ENSACIG00000009248	cpsf4	79	75.229	Amphilophus_citrinellus
ENSCAPG00000013881	CPSF4	88	84.305	ENSAOCG00000019616	cpsf4	82	85.068	Amphiprion_ocellaris
ENSCAPG00000013881	CPSF4	88	84.305	ENSAPEG00000011679	cpsf4	82	85.068	Amphiprion_percula
ENSCAPG00000013881	CPSF4	88	82.667	ENSATEG00000007010	cpsf4	82	83.408	Anabas_testudineus
ENSCAPG00000013881	CPSF4	87	94.037	ENSACAG00000012941	CPSF4	72	94.037	Anolis_carolinensis
ENSCAPG00000013881	CPSF4	87	99.083	ENSANAG00000021360	CPSF4	81	99.083	Aotus_nancymaae
ENSCAPG00000013881	CPSF4	87	83.562	ENSACLG00000010374	cpsf4	81	83.562	Astatotilapia_calliptera
ENSCAPG00000013881	CPSF4	88	83.036	ENSAMXG00000031647	cpsf4	83	83.929	Astyanax_mexicanus
ENSCAPG00000013881	CPSF4	87	87.156	ENSBTAG00000002090	CPSF4	79	87.156	Bos_taurus
ENSCAPG00000013881	CPSF4	87	99.083	ENSCJAG00000015826	CPSF4	81	99.083	Callithrix_jacchus
ENSCAPG00000013881	CPSF4	87	99.541	ENSCAFG00000015036	CPSF4	81	99.541	Canis_familiaris
ENSCAPG00000013881	CPSF4	96	95.021	ENSCAFG00020014462	CPSF4	87	98.246	Canis_lupus_dingo
ENSCAPG00000013881	CPSF4	87	99.083	ENSCHIG00000014313	CPSF4	81	99.083	Capra_hircus
ENSCAPG00000013881	CPSF4	82	88.889	ENSTSYG00000014604	-	76	88.889	Carlito_syrichta
ENSCAPG00000013881	CPSF4	82	89.506	ENSTSYG00000008195	-	89	89.506	Carlito_syrichta
ENSCAPG00000013881	CPSF4	82	99.375	ENSTSYG00000005712	-	76	99.375	Carlito_syrichta
ENSCAPG00000013881	CPSF4	82	100.000	ENSCPOG00000001783	CPSF4	76	100.000	Cavia_porcellus
ENSCAPG00000013881	CPSF4	87	99.083	ENSCCAG00000028291	CPSF4	81	99.083	Cebus_capucinus
ENSCAPG00000013881	CPSF4	87	99.083	ENSCATG00000038440	CPSF4	81	99.083	Cercocebus_atys
ENSCAPG00000013881	CPSF4	87	99.541	ENSCLAG00000007050	CPSF4	81	99.541	Chinchilla_lanigera
ENSCAPG00000013881	CPSF4	87	99.083	ENSCSAG00000017795	CPSF4	81	99.083	Chlorocebus_sabaeus
ENSCAPG00000013881	CPSF4	86	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSCAPG00000013881	CPSF4	92	50.840	ENSCING00000021080	-	77	53.810	Ciona_intestinalis
ENSCAPG00000013881	CPSF4	92	48.077	ENSCSAVG00000011469	-	79	50.000	Ciona_savignyi
ENSCAPG00000013881	CPSF4	87	99.083	ENSCANG00000019384	CPSF4	81	99.083	Colobus_angolensis_palliatus
ENSCAPG00000013881	CPSF4	82	100.000	ENSCGRG00001024184	Cpsf4	76	100.000	Cricetulus_griseus_chok1gshd
ENSCAPG00000013881	CPSF4	87	100.000	ENSCGRG00000013892	Cpsf4	81	100.000	Cricetulus_griseus_crigri
ENSCAPG00000013881	CPSF4	88	82.960	ENSCSEG00000019055	cpsf4	82	82.960	Cynoglossus_semilaevis
ENSCAPG00000013881	CPSF4	88	82.063	ENSCVAG00000016528	cpsf4	82	82.805	Cyprinodon_variegatus
ENSCAPG00000013881	CPSF4	88	83.036	ENSDARG00000020217	cpsf4	83	83.036	Danio_rerio
ENSCAPG00000013881	CPSF4	87	99.541	ENSDNOG00000006344	CPSF4	81	99.541	Dasypus_novemcinctus
ENSCAPG00000013881	CPSF4	86	99.539	ENSDORG00000000742	Cpsf4	100	99.539	Dipodomys_ordii
ENSCAPG00000013881	CPSF4	95	53.383	FBgn0015621	Clp	84	54.400	Drosophila_melanogaster
ENSCAPG00000013881	CPSF4	54	100.000	ENSETEG00000002608	CPSF4	51	100.000	Echinops_telfairi
ENSCAPG00000013881	CPSF4	86	65.278	ENSEBUG00000012552	cpsf4	77	65.278	Eptatretus_burgeri
ENSCAPG00000013881	CPSF4	87	88.532	ENSEASG00005002487	CPSF4	79	88.532	Equus_asinus_asinus
ENSCAPG00000013881	CPSF4	87	100.000	ENSECAG00000007525	CPSF4	81	100.000	Equus_caballus
ENSCAPG00000013881	CPSF4	66	100.000	ENSEEUG00000002158	CPSF4	66	100.000	Erinaceus_europaeus
ENSCAPG00000013881	CPSF4	88	80.176	ENSELUG00000011481	cpsf4	83	80.176	Esox_lucius
ENSCAPG00000013881	CPSF4	87	100.000	ENSFCAG00000015070	CPSF4	81	100.000	Felis_catus
ENSCAPG00000013881	CPSF4	54	59.722	ENSFALG00000012906	-	73	67.857	Ficedula_albicollis
ENSCAPG00000013881	CPSF4	87	83.945	ENSFALG00000013799	CPSF4	79	82.110	Ficedula_albicollis
ENSCAPG00000013881	CPSF4	87	100.000	ENSFDAG00000014092	CPSF4	90	100.000	Fukomys_damarensis
ENSCAPG00000013881	CPSF4	88	81.614	ENSFHEG00000010880	cpsf4	82	82.353	Fundulus_heteroclitus
ENSCAPG00000013881	CPSF4	96	70.325	ENSGMOG00000002330	cpsf4	80	74.429	Gadus_morhua
ENSCAPG00000013881	CPSF4	87	83.486	ENSGALG00000004714	CPSF4	79	82.110	Gallus_gallus
ENSCAPG00000013881	CPSF4	73	38.421	ENSGALG00000004441	-	92	36.842	Gallus_gallus
ENSCAPG00000013881	CPSF4	88	81.614	ENSGAFG00000010580	cpsf4	81	82.353	Gambusia_affinis
ENSCAPG00000013881	CPSF4	96	71.545	ENSGACG00000007792	cpsf4	80	75.909	Gasterosteus_aculeatus
ENSCAPG00000013881	CPSF4	87	95.413	ENSGAGG00000021835	CPSF4	81	95.413	Gopherus_agassizii
ENSCAPG00000013881	CPSF4	52	80.916	ENSGAGG00000020579	-	64	87.719	Gopherus_agassizii
ENSCAPG00000013881	CPSF4	87	99.083	ENSGGOG00000015131	CPSF4	81	99.083	Gorilla_gorilla
ENSCAPG00000013881	CPSF4	87	83.562	ENSHBUG00000013699	cpsf4	81	83.562	Haplochromis_burtoni
ENSCAPG00000013881	CPSF4	87	97.727	ENSHGLG00000017150	CPSF4	81	97.727	Heterocephalus_glaber_female
ENSCAPG00000013881	CPSF4	87	96.380	ENSHGLG00100009215	-	95	96.380	Heterocephalus_glaber_male
ENSCAPG00000013881	CPSF4	82	63.750	ENSHGLG00100017302	-	70	60.625	Heterocephalus_glaber_male
ENSCAPG00000013881	CPSF4	88	79.372	ENSHCOG00000004397	cpsf4	82	76.923	Hippocampus_comes
ENSCAPG00000013881	CPSF4	88	82.589	ENSIPUG00000017147	cpsf4	82	84.753	Ictalurus_punctatus
ENSCAPG00000013881	CPSF4	87	100.000	ENSSTOG00000001688	CPSF4	81	100.000	Ictidomys_tridecemlineatus
ENSCAPG00000013881	CPSF4	87	99.541	ENSJJAG00000019426	Cpsf4	81	99.541	Jaculus_jaculus
ENSCAPG00000013881	CPSF4	87	82.353	ENSKMAG00000015642	cpsf4	82	82.353	Kryptolebias_marmoratus
ENSCAPG00000013881	CPSF4	88	86.547	ENSLACG00000010938	CPSF4	82	87.330	Latimeria_chalumnae
ENSCAPG00000013881	CPSF4	87	59.817	ENSLACG00000018470	-	79	59.817	Latimeria_chalumnae
ENSCAPG00000013881	CPSF4	88	87.387	ENSLOCG00000004814	cpsf4	82	88.182	Lepisosteus_oculatus
ENSCAPG00000013881	CPSF4	87	99.541	ENSLAFG00000000159	CPSF4	100	98.758	Loxodonta_africana
ENSCAPG00000013881	CPSF4	87	99.083	ENSMFAG00000001462	CPSF4	100	87.500	Macaca_fascicularis
ENSCAPG00000013881	CPSF4	87	99.083	ENSMMUG00000019191	CPSF4	81	99.083	Macaca_mulatta
ENSCAPG00000013881	CPSF4	87	99.083	ENSMNEG00000032306	CPSF4	81	99.083	Macaca_nemestrina
ENSCAPG00000013881	CPSF4	87	99.083	ENSMLEG00000034721	CPSF4	81	99.083	Mandrillus_leucophaeus
ENSCAPG00000013881	CPSF4	88	82.511	ENSMAMG00000006244	cpsf4	82	82.589	Mastacembelus_armatus
ENSCAPG00000013881	CPSF4	87	83.562	ENSMZEG00005007515	cpsf4	81	83.562	Maylandia_zebra
ENSCAPG00000013881	CPSF4	87	83.486	ENSMGAG00000004235	CPSF4	92	82.110	Meleagris_gallopavo
ENSCAPG00000013881	CPSF4	87	100.000	ENSMAUG00000021253	Cpsf4	81	100.000	Mesocricetus_auratus
ENSCAPG00000013881	CPSF4	87	99.083	ENSMICG00000017429	CPSF4	81	99.083	Microcebus_murinus
ENSCAPG00000013881	CPSF4	87	100.000	ENSMOCG00000014901	Cpsf4	81	100.000	Microtus_ochrogaster
ENSCAPG00000013881	CPSF4	87	83.710	ENSMMOG00000001813	cpsf4	68	98.246	Mola_mola
ENSCAPG00000013881	CPSF4	87	96.789	ENSMODG00000001367	CPSF4	81	96.789	Monodelphis_domestica
ENSCAPG00000013881	CPSF4	96	77.273	ENSMALG00000012611	cpsf4	85	82.110	Monopterus_albus
ENSCAPG00000013881	CPSF4	87	100.000	MGP_CAROLIEiJ_G0028012	Cpsf4	81	100.000	Mus_caroli
ENSCAPG00000013881	CPSF4	87	100.000	ENSMUSG00000029625	Cpsf4	81	100.000	Mus_musculus
ENSCAPG00000013881	CPSF4	87	100.000	MGP_PahariEiJ_G0024581	Cpsf4	81	100.000	Mus_pahari
ENSCAPG00000013881	CPSF4	87	99.541	MGP_SPRETEiJ_G0029013	Cpsf4	81	99.541	Mus_spretus
ENSCAPG00000013881	CPSF4	87	100.000	ENSMPUG00000016508	CPSF4	81	100.000	Mustela_putorius_furo
ENSCAPG00000013881	CPSF4	87	87.615	ENSMLUG00000010980	CPSF4	92	87.615	Myotis_lucifugus
ENSCAPG00000013881	CPSF4	87	99.541	ENSNGAG00000001567	Cpsf4	81	99.541	Nannospalax_galili
ENSCAPG00000013881	CPSF4	87	83.562	ENSNBRG00000003943	cpsf4	87	83.562	Neolamprologus_brichardi
ENSCAPG00000013881	CPSF4	87	95.413	ENSNLEG00000011074	CPSF4	80	95.413	Nomascus_leucogenys
ENSCAPG00000013881	CPSF4	87	96.789	ENSMEUG00000006955	CPSF4	81	96.789	Notamacropus_eugenii
ENSCAPG00000013881	CPSF4	87	99.541	ENSOPRG00000013663	CPSF4	81	99.541	Ochotona_princeps
ENSCAPG00000013881	CPSF4	85	79.907	ENSODEG00000018283	-	73	83.851	Octodon_degus
ENSCAPG00000013881	CPSF4	87	100.000	ENSODEG00000011181	-	81	100.000	Octodon_degus
ENSCAPG00000013881	CPSF4	87	74.312	ENSODEG00000009779	-	78	74.312	Octodon_degus
ENSCAPG00000013881	CPSF4	87	83.562	ENSONIG00000008495	cpsf4	81	83.562	Oreochromis_niloticus
ENSCAPG00000013881	CPSF4	87	95.413	ENSOANG00000007729	CPSF4	93	95.413	Ornithorhynchus_anatinus
ENSCAPG00000013881	CPSF4	87	55.752	ENSOANG00000009568	-	83	53.540	Ornithorhynchus_anatinus
ENSCAPG00000013881	CPSF4	87	99.083	ENSOCUG00000002437	CPSF4	57	99.083	Oryctolagus_cuniculus
ENSCAPG00000013881	CPSF4	88	81.532	ENSORLG00000022798	cpsf4	82	82.273	Oryzias_latipes
ENSCAPG00000013881	CPSF4	88	81.532	ENSORLG00020008548	cpsf4	82	82.273	Oryzias_latipes_hni
ENSCAPG00000013881	CPSF4	88	81.532	ENSORLG00015019575	cpsf4	82	82.273	Oryzias_latipes_hsok
ENSCAPG00000013881	CPSF4	88	80.180	ENSOMEG00000005176	cpsf4	82	80.909	Oryzias_melastigma
ENSCAPG00000013881	CPSF4	87	99.541	ENSOGAG00000010884	CPSF4	81	99.541	Otolemur_garnettii
ENSCAPG00000013881	CPSF4	96	76.448	ENSOARG00000018668	CPSF4	79	86.574	Ovis_aries
ENSCAPG00000013881	CPSF4	87	98.624	ENSPPAG00000043355	CPSF4	81	98.624	Pan_paniscus
ENSCAPG00000013881	CPSF4	87	100.000	ENSPPRG00000003134	CPSF4	81	100.000	Panthera_pardus
ENSCAPG00000013881	CPSF4	87	99.541	ENSPTIG00000005604	CPSF4	81	99.541	Panthera_tigris_altaica
ENSCAPG00000013881	CPSF4	87	98.624	ENSPTRG00000019453	CPSF4	81	98.624	Pan_troglodytes
ENSCAPG00000013881	CPSF4	87	99.083	ENSPANG00000023123	CPSF4	81	99.083	Papio_anubis
ENSCAPG00000013881	CPSF4	88	81.938	ENSPKIG00000014278	cpsf4	82	82.667	Paramormyrops_kingsleyae
ENSCAPG00000013881	CPSF4	87	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSCAPG00000013881	CPSF4	86	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSCAPG00000013881	CPSF4	93	72.650	ENSPMGG00000017735	cpsf4	82	74.429	Periophthalmus_magnuspinnatus
ENSCAPG00000013881	CPSF4	87	100.000	ENSPEMG00000004508	Cpsf4	81	100.000	Peromyscus_maniculatus_bairdii
ENSCAPG00000013881	CPSF4	87	96.789	ENSPCIG00000024776	CPSF4	81	96.789	Phascolarctos_cinereus
ENSCAPG00000013881	CPSF4	88	81.614	ENSPFOG00000014912	cpsf4	81	82.353	Poecilia_formosa
ENSCAPG00000013881	CPSF4	88	72.523	ENSPLAG00000009599	cpsf4	81	72.523	Poecilia_latipinna
ENSCAPG00000013881	CPSF4	88	81.614	ENSPMEG00000009790	cpsf4	81	82.353	Poecilia_mexicana
ENSCAPG00000013881	CPSF4	88	80.717	ENSPREG00000018166	cpsf4	81	77.828	Poecilia_reticulata
ENSCAPG00000013881	CPSF4	87	98.165	ENSPPYG00000017378	CPSF4	93	98.165	Pongo_abelii
ENSCAPG00000013881	CPSF4	86	99.539	ENSPCAG00000001892	CPSF4	81	99.539	Procavia_capensis
ENSCAPG00000013881	CPSF4	97	92.245	ENSPCOG00000012771	CPSF4	85	99.543	Propithecus_coquereli
ENSCAPG00000013881	CPSF4	86	100.000	ENSPVAG00000007531	CPSF4	81	100.000	Pteropus_vampyrus
ENSCAPG00000013881	CPSF4	87	83.562	ENSPNYG00000018559	cpsf4	81	83.562	Pundamilia_nyererei
ENSCAPG00000013881	CPSF4	88	83.482	ENSPNAG00000003736	cpsf4	83	84.375	Pygocentrus_nattereri
ENSCAPG00000013881	CPSF4	82	100.000	ENSRNOG00000000985	Cpsf4	76	100.000	Rattus_norvegicus
ENSCAPG00000013881	CPSF4	87	99.083	ENSRBIG00000033886	CPSF4	93	99.083	Rhinopithecus_bieti
ENSCAPG00000013881	CPSF4	82	98.750	ENSRROG00000040431	CPSF4	76	98.750	Rhinopithecus_roxellana
ENSCAPG00000013881	CPSF4	87	99.083	ENSSBOG00000020493	CPSF4	100	87.500	Saimiri_boliviensis_boliviensis
ENSCAPG00000013881	CPSF4	87	96.789	ENSSHAG00000011533	CPSF4	81	96.789	Sarcophilus_harrisii
ENSCAPG00000013881	CPSF4	87	83.556	ENSSFOG00015007883	cpsf4	82	84.444	Scleropages_formosus
ENSCAPG00000013881	CPSF4	88	76.577	ENSSMAG00000006374	cpsf4	81	74.775	Scophthalmus_maximus
ENSCAPG00000013881	CPSF4	88	82.511	ENSSDUG00000018887	cpsf4	82	83.258	Seriola_dumerili
ENSCAPG00000013881	CPSF4	88	82.511	ENSSLDG00000019078	cpsf4	82	83.258	Seriola_lalandi_dorsalis
ENSCAPG00000013881	CPSF4	87	99.541	ENSSARG00000012416	CPSF4	93	99.541	Sorex_araneus
ENSCAPG00000013881	CPSF4	82	56.938	ENSSPUG00000014803	-	74	57.005	Sphenodon_punctatus
ENSCAPG00000013881	CPSF4	87	94.037	ENSSPUG00000003549	CPSF4	81	94.037	Sphenodon_punctatus
ENSCAPG00000013881	CPSF4	88	77.928	ENSSPAG00000006174	cpsf4	80	74.324	Stegastes_partitus
ENSCAPG00000013881	CPSF4	87	88.073	ENSSSCG00000026896	CPSF4	79	88.073	Sus_scrofa
ENSCAPG00000013881	CPSF4	86	83.796	ENSTGUG00000007552	CPSF4	78	81.944	Taeniopygia_guttata
ENSCAPG00000013881	CPSF4	87	79.464	ENSTRUG00000024220	cpsf4	81	79.464	Takifugu_rubripes
ENSCAPG00000013881	CPSF4	88	77.578	ENSTNIG00000006265	cpsf4	81	80.090	Tetraodon_nigroviridis
ENSCAPG00000013881	CPSF4	87	88.991	ENSTBEG00000011406	CPSF4	93	88.991	Tupaia_belangeri
ENSCAPG00000013881	CPSF4	87	73.394	ENSTTRG00000003007	CPSF4	55	100.000	Tursiops_truncatus
ENSCAPG00000013881	CPSF4	78	86.735	ENSUAMG00000008051	CPSF4	66	86.735	Ursus_americanus
ENSCAPG00000013881	CPSF4	87	88.073	ENSUMAG00000009474	CPSF4	79	88.073	Ursus_maritimus
ENSCAPG00000013881	CPSF4	87	88.073	ENSVVUG00000008824	CPSF4	79	88.073	Vulpes_vulpes
ENSCAPG00000013881	CPSF4	85	60.829	ENSXETG00000004641	cpsf4l	80	60.829	Xenopus_tropicalis
ENSCAPG00000013881	CPSF4	87	87.719	ENSXETG00000009892	cpsf4	82	87.719	Xenopus_tropicalis
ENSCAPG00000013881	CPSF4	88	81.614	ENSXCOG00000016040	cpsf4	82	81.614	Xiphophorus_couchianus
ENSCAPG00000013881	CPSF4	88	81.614	ENSXMAG00000024670	cpsf4	81	82.353	Xiphophorus_maculatus