EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000014140 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 1246 bases
Position: chrAVPZ01000700.1:8011589-8012834
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000013546	LSM	PF01423.22	5.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000017308	LSM4-202	318	-	ENSCAPP00000013547	105 (aa)	-	-
ENSCAPT00000017307	LSM4-201	420	-	ENSCAPP00000013546	139 (aa)	-	UPI00022B6667

Gene Model

Click here to download ENSCAPG00000014140's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000014140's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000014140	LSM4	52	34.722	ENSCAPG00000016432	-	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000014140	LSM4	100	97.842	ENSG00000130520	LSM4	100	97.842	Homo_sapiens
ENSCAPG00000014140	LSM4	71	95.960	ENSAPOG00000005643	lsm4	58	97.727	Acanthochromis_polyacanthus
ENSCAPG00000014140	LSM4	99	97.826	ENSAMEG00000011162	LSM4	95	97.826	Ailuropoda_melanoleuca
ENSCAPG00000014140	LSM4	96	77.857	ENSAOCG00000006414	lsm4	59	97.727	Amphiprion_ocellaris
ENSCAPG00000014140	LSM4	71	95.960	ENSAPEG00000006238	lsm4	59	97.727	Amphiprion_percula
ENSCAPG00000014140	LSM4	71	95.960	ENSATEG00000016559	lsm4	58	97.727	Anabas_testudineus
ENSCAPG00000014140	LSM4	100	97.842	ENSANAG00000034659	LSM4	100	97.842	Aotus_nancymaae
ENSCAPG00000014140	LSM4	79	83.871	ENSACLG00000022738	lsm4	60	97.727	Astatotilapia_calliptera
ENSCAPG00000014140	LSM4	99	80.714	ENSAMXG00000016932	lsm4	62	96.591	Astyanax_mexicanus
ENSCAPG00000014140	LSM4	100	97.842	ENSBTAG00000008578	LSM4	100	97.842	Bos_taurus
ENSCAPG00000014140	LSM4	60	74.699	WBGene00003078	lsm-4	67	75.610	Caenorhabditis_elegans
ENSCAPG00000014140	LSM4	100	97.842	ENSCJAG00000014171	LSM4	100	97.842	Callithrix_jacchus
ENSCAPG00000014140	LSM4	99	97.826	ENSCAFG00000014900	LSM4	90	97.826	Canis_familiaris
ENSCAPG00000014140	LSM4	100	97.842	ENSCAFG00020012137	LSM4	100	97.842	Canis_lupus_dingo
ENSCAPG00000014140	LSM4	99	97.826	ENSCHIG00000010928	LSM4	91	97.826	Capra_hircus
ENSCAPG00000014140	LSM4	100	98.561	ENSTSYG00000030906	LSM4	100	98.561	Carlito_syrichta
ENSCAPG00000014140	LSM4	100	100.000	ENSCPOG00000024117	LSM4	100	100.000	Cavia_porcellus
ENSCAPG00000014140	LSM4	100	97.842	ENSCCAG00000036308	LSM4	100	97.842	Cebus_capucinus
ENSCAPG00000014140	LSM4	100	97.842	ENSCATG00000029311	LSM4	100	97.842	Cercocebus_atys
ENSCAPG00000014140	LSM4	100	95.683	ENSCLAG00000010828	LSM4	100	95.683	Chinchilla_lanigera
ENSCAPG00000014140	LSM4	100	97.842	ENSCSAG00000005370	LSM4	100	97.842	Chlorocebus_sabaeus
ENSCAPG00000014140	LSM4	100	81.295	ENSCPBG00000012925	LSM4	100	88.489	Chrysemys_picta_bellii
ENSCAPG00000014140	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSCAPG00000014140	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSCAPG00000014140	LSM4	100	97.842	ENSCANG00000043686	LSM4	100	97.842	Colobus_angolensis_palliatus
ENSCAPG00000014140	LSM4	100	94.964	ENSCGRG00001014436	Lsm4	100	94.964	Cricetulus_griseus_chok1gshd
ENSCAPG00000014140	LSM4	99	94.928	ENSCGRG00000009398	Lsm4	100	94.928	Cricetulus_griseus_crigri
ENSCAPG00000014140	LSM4	70	94.845	ENSCSEG00000016127	lsm4	62	96.591	Cynoglossus_semilaevis
ENSCAPG00000014140	LSM4	96	77.778	ENSCVAG00000010601	lsm4	62	96.591	Cyprinodon_variegatus
ENSCAPG00000014140	LSM4	86	75.000	ENSCVAG00000021828	lsm4	56	95.890	Cyprinodon_variegatus
ENSCAPG00000014140	LSM4	99	77.622	ENSDARG00000023852	lsm4	62	97.727	Danio_rerio
ENSCAPG00000014140	LSM4	100	95.683	ENSDORG00000024225	Lsm4	100	95.683	Dipodomys_ordii
ENSCAPG00000014140	LSM4	70	82.474	FBgn0032240	CG17768	57	89.773	Drosophila_melanogaster
ENSCAPG00000014140	LSM4	89	95.968	ENSETEG00000007762	-	100	95.968	Echinops_telfairi
ENSCAPG00000014140	LSM4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSCAPG00000014140	LSM4	100	97.842	ENSECAG00000010141	LSM4	57	97.842	Equus_caballus
ENSCAPG00000014140	LSM4	95	83.582	ENSELUG00000012821	lsm4	66	97.701	Esox_lucius
ENSCAPG00000014140	LSM4	100	97.842	ENSFCAG00000040580	LSM4	100	97.842	Felis_catus
ENSCAPG00000014140	LSM4	99	80.435	ENSFALG00000009478	LSM4	99	88.406	Ficedula_albicollis
ENSCAPG00000014140	LSM4	99	96.377	ENSFDAG00000010124	LSM4	100	96.377	Fukomys_damarensis
ENSCAPG00000014140	LSM4	69	95.833	ENSGMOG00000007729	lsm4	59	97.701	Gadus_morhua
ENSCAPG00000014140	LSM4	100	80.576	ENSGALG00000003385	LSM4	100	88.489	Gallus_gallus
ENSCAPG00000014140	LSM4	79	83.065	ENSGAFG00000004903	lsm4	55	93.151	Gambusia_affinis
ENSCAPG00000014140	LSM4	68	96.842	ENSGACG00000008140	lsm4	59	97.727	Gasterosteus_aculeatus
ENSCAPG00000014140	LSM4	100	81.295	ENSGAGG00000017812	LSM4	100	88.489	Gopherus_agassizii
ENSCAPG00000014140	LSM4	100	97.842	ENSGGOG00000012914	-	100	97.842	Gorilla_gorilla
ENSCAPG00000014140	LSM4	100	96.403	ENSHGLG00000006568	LSM4	100	96.403	Heterocephalus_glaber_female
ENSCAPG00000014140	LSM4	67	98.925	ENSHGLG00100007894	LSM4	100	98.925	Heterocephalus_glaber_male
ENSCAPG00000014140	LSM4	96	77.612	ENSHCOG00000008819	lsm4	62	97.727	Hippocampus_comes
ENSCAPG00000014140	LSM4	99	80.714	ENSIPUG00000005368	Lsm4	62	97.727	Ictalurus_punctatus
ENSCAPG00000014140	LSM4	100	97.842	ENSSTOG00000016494	LSM4	100	97.842	Ictidomys_tridecemlineatus
ENSCAPG00000014140	LSM4	100	96.403	ENSJJAG00000017420	Lsm4	100	96.403	Jaculus_jaculus
ENSCAPG00000014140	LSM4	62	96.512	ENSKMAG00000005073	lsm4	61	96.591	Kryptolebias_marmoratus
ENSCAPG00000014140	LSM4	71	95.960	ENSLBEG00000027930	lsm4	59	97.727	Labrus_bergylta
ENSCAPG00000014140	LSM4	97	82.963	ENSLACG00000015861	LSM4	96	82.963	Latimeria_chalumnae
ENSCAPG00000014140	LSM4	93	82.946	ENSLOCG00000002025	lsm4	62	96.591	Lepisosteus_oculatus
ENSCAPG00000014140	LSM4	99	96.377	ENSLAFG00000017459	LSM4	99	96.377	Loxodonta_africana
ENSCAPG00000014140	LSM4	100	97.842	ENSMFAG00000031194	LSM4	100	97.842	Macaca_fascicularis
ENSCAPG00000014140	LSM4	100	97.842	ENSMMUG00000004405	LSM4	100	97.842	Macaca_mulatta
ENSCAPG00000014140	LSM4	100	97.842	ENSMNEG00000042899	LSM4	100	97.842	Macaca_nemestrina
ENSCAPG00000014140	LSM4	100	97.842	ENSMLEG00000027948	LSM4	100	97.842	Mandrillus_leucophaeus
ENSCAPG00000014140	LSM4	96	80.000	ENSMAMG00000006190	lsm4	62	97.727	Mastacembelus_armatus
ENSCAPG00000014140	LSM4	79	83.871	ENSMZEG00005016420	lsm4	60	97.727	Maylandia_zebra
ENSCAPG00000014140	LSM4	99	82.014	ENSMGAG00000004976	LSM4	99	88.406	Meleagris_gallopavo
ENSCAPG00000014140	LSM4	100	97.122	ENSMICG00000000222	LSM4	100	97.122	Microcebus_murinus
ENSCAPG00000014140	LSM4	100	95.683	ENSMOCG00000020861	Lsm4	100	95.683	Microtus_ochrogaster
ENSCAPG00000014140	LSM4	89	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSCAPG00000014140	LSM4	96	77.372	ENSMALG00000018159	lsm4	62	96.591	Monopterus_albus
ENSCAPG00000014140	LSM4	100	95.683	MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	Mus_caroli
ENSCAPG00000014140	LSM4	100	95.683	ENSMUSG00000031848	Lsm4	100	95.683	Mus_musculus
ENSCAPG00000014140	LSM4	100	95.683	MGP_PahariEiJ_G0021623	Lsm4	100	95.683	Mus_pahari
ENSCAPG00000014140	LSM4	100	95.683	MGP_SPRETEiJ_G0032276	Lsm4	100	95.683	Mus_spretus
ENSCAPG00000014140	LSM4	100	97.842	ENSMPUG00000015589	LSM4	100	97.842	Mustela_putorius_furo
ENSCAPG00000014140	LSM4	99	97.826	ENSMLUG00000004010	LSM4	99	97.826	Myotis_lucifugus
ENSCAPG00000014140	LSM4	100	95.683	ENSNGAG00000008644	Lsm4	100	95.683	Nannospalax_galili
ENSCAPG00000014140	LSM4	71	95.918	ENSNBRG00000022150	lsm4	54	97.701	Neolamprologus_brichardi
ENSCAPG00000014140	LSM4	89	90.323	ENSMEUG00000013229	LSM4	100	90.323	Notamacropus_eugenii
ENSCAPG00000014140	LSM4	89	91.129	ENSOPRG00000005575	LSM4	100	81.452	Ochotona_princeps
ENSCAPG00000014140	LSM4	100	86.331	ENSODEG00000004519	-	100	73.381	Octodon_degus
ENSCAPG00000014140	LSM4	100	96.403	ENSODEG00000020549	-	100	96.403	Octodon_degus
ENSCAPG00000014140	LSM4	100	72.662	ENSODEG00000011712	-	100	72.662	Octodon_degus
ENSCAPG00000014140	LSM4	79	83.871	ENSONIG00000012724	lsm4	60	97.727	Oreochromis_niloticus
ENSCAPG00000014140	LSM4	63	92.308	ENSOANG00000007434	LSM4	78	92.308	Ornithorhynchus_anatinus
ENSCAPG00000014140	LSM4	97	73.154	ENSORLG00000008391	lsm4	61	96.591	Oryzias_latipes
ENSCAPG00000014140	LSM4	97	73.154	ENSORLG00020014829	lsm4	61	96.591	Oryzias_latipes_hni
ENSCAPG00000014140	LSM4	97	72.483	ENSORLG00015010205	lsm4	61	96.591	Oryzias_latipes_hsok
ENSCAPG00000014140	LSM4	100	82.734	ENSOMEG00000003606	lsm4	61	96.591	Oryzias_melastigma
ENSCAPG00000014140	LSM4	71	96.970	ENSOGAG00000027992	LSM4	60	98.851	Otolemur_garnettii
ENSCAPG00000014140	LSM4	95	96.970	ENSOARG00000012553	LSM4	94	98.319	Ovis_aries
ENSCAPG00000014140	LSM4	100	97.842	ENSPPAG00000044045	-	100	97.842	Pan_paniscus
ENSCAPG00000014140	LSM4	100	97.842	ENSPPRG00000018264	LSM4	100	97.842	Panthera_pardus
ENSCAPG00000014140	LSM4	99	97.826	ENSPTIG00000006306	LSM4	100	97.826	Panthera_tigris_altaica
ENSCAPG00000014140	LSM4	100	97.842	ENSPTRG00000031470	LSM4	100	97.842	Pan_troglodytes
ENSCAPG00000014140	LSM4	100	97.842	ENSPANG00000014399	LSM4	100	97.842	Papio_anubis
ENSCAPG00000014140	LSM4	99	81.295	ENSPKIG00000006154	lsm4	62	97.727	Paramormyrops_kingsleyae
ENSCAPG00000014140	LSM4	99	80.435	ENSPSIG00000012358	LSM4	100	88.406	Pelodiscus_sinensis
ENSCAPG00000014140	LSM4	100	95.683	ENSPEMG00000001358	Lsm4	100	95.683	Peromyscus_maniculatus_bairdii
ENSCAPG00000014140	LSM4	90	79.545	ENSPLAG00000016267	lsm4	62	97.727	Poecilia_latipinna
ENSCAPG00000014140	LSM4	96	78.676	ENSPMEG00000016378	lsm4	63	97.701	Poecilia_mexicana
ENSCAPG00000014140	LSM4	100	97.842	ENSPPYG00000009736	LSM4	100	97.842	Pongo_abelii
ENSCAPG00000014140	LSM4	89	95.968	ENSPCAG00000008513	LSM4	100	95.968	Procavia_capensis
ENSCAPG00000014140	LSM4	100	97.122	ENSPCOG00000019837	LSM4	100	97.122	Propithecus_coquereli
ENSCAPG00000014140	LSM4	100	97.842	ENSPVAG00000015383	LSM4	100	97.842	Pteropus_vampyrus
ENSCAPG00000014140	LSM4	79	83.871	ENSPNYG00000016794	lsm4	60	97.727	Pundamilia_nyererei
ENSCAPG00000014140	LSM4	96	82.836	ENSPNAG00000016598	lsm4	65	97.701	Pygocentrus_nattereri
ENSCAPG00000014140	LSM4	100	95.683	ENSRNOG00000019572	Lsm4	100	95.683	Rattus_norvegicus
ENSCAPG00000014140	LSM4	100	97.842	ENSRBIG00000024717	LSM4	100	97.842	Rhinopithecus_bieti
ENSCAPG00000014140	LSM4	100	97.842	ENSRROG00000045706	LSM4	100	97.842	Rhinopithecus_roxellana
ENSCAPG00000014140	LSM4	90	97.600	ENSSBOG00000022455	LSM4	100	97.600	Saimiri_boliviensis_boliviensis
ENSCAPG00000014140	LSM4	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
ENSCAPG00000014140	LSM4	96	80.597	ENSSFOG00015021067	lsm4	62	97.727	Scleropages_formosus
ENSCAPG00000014140	LSM4	71	94.949	ENSSMAG00000021020	lsm4	59	97.727	Scophthalmus_maximus
ENSCAPG00000014140	LSM4	71	95.960	ENSSDUG00000009588	lsm4	53	97.727	Seriola_dumerili
ENSCAPG00000014140	LSM4	71	95.960	ENSSLDG00000006827	lsm4	52	97.727	Seriola_lalandi_dorsalis
ENSCAPG00000014140	LSM4	63	97.701	ENSSPUG00000010166	LSM4	56	97.701	Sphenodon_punctatus
ENSCAPG00000014140	LSM4	71	95.960	ENSSPAG00000011615	lsm4	58	97.727	Stegastes_partitus
ENSCAPG00000014140	LSM4	100	97.842	ENSSSCG00000034314	LSM4	100	97.842	Sus_scrofa
ENSCAPG00000014140	LSM4	79	81.452	ENSTRUG00000021737	lsm4	62	95.455	Takifugu_rubripes
ENSCAPG00000014140	LSM4	96	81.022	ENSTNIG00000010191	lsm4	61	96.591	Tetraodon_nigroviridis
ENSCAPG00000014140	LSM4	99	97.826	ENSUAMG00000000665	LSM4	99	97.826	Ursus_americanus
ENSCAPG00000014140	LSM4	100	97.842	ENSUMAG00000009013	LSM4	100	97.842	Ursus_maritimus
ENSCAPG00000014140	LSM4	99	97.826	ENSVVUG00000008136	LSM4	71	97.826	Vulpes_vulpes
ENSCAPG00000014140	LSM4	100	89.209	ENSXETG00000024933	lsm4	100	87.050	Xenopus_tropicalis