EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000014519 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 19622 bases
Position: chrAVPZ01000400.1:10948155-10967776
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000014040	PABP	PF00658.18	1.9e-26	1	1
ENSCAPP00000014040	RRM_5	PF13893.6	6.6e-11	1	1
ENSCAPP00000014040	RRM_1	PF00076.22	1e-62	1	3
ENSCAPP00000014040	RRM_1	PF00076.22	1e-62	2	3
ENSCAPP00000014040	RRM_1	PF00076.22	1e-62	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000017809	PABPC1L-201	1593	-	ENSCAPP00000014040	530 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000014519's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000014519's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000014519	PABPC1L	56	56.497	ENSCAPG00000010714	PABPC5	82	56.497
ENSCAPG00000014519	PABPC1L	57	36.434	ENSCAPG00000006451	SF3B4	56	37.500
ENSCAPG00000014519	PABPC1L	51	32.530	ENSCAPG00000017620	ELAVL3	80	32.530
ENSCAPG00000014519	PABPC1L	59	58.472	ENSCAPG00000000555	PABPC4L	100	58.472
ENSCAPG00000014519	PABPC1L	53	33.735	ENSCAPG00000003609	ELAVL2	100	33.735
ENSCAPG00000014519	PABPC1L	99	61.355	ENSCAPG00000015984	PABPC4	98	62.385
ENSCAPG00000014519	PABPC1L	96	62.546	ENSCAPG00000013098	PABPC1	95	62.546

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000014519	PABPC1L	100	80.692	ENSG00000101104	PABPC1L	96	89.370	Homo_sapiens
ENSCAPG00000014519	PABPC1L	98	59.640	ENSAPOG00000010842	pabpc1l	98	60.949	Acanthochromis_polyacanthus
ENSCAPG00000014519	PABPC1L	98	67.808	ENSAMEG00000004099	PABPC1L	99	68.027	Ailuropoda_melanoleuca
ENSCAPG00000014519	PABPC1L	99	65.000	ENSACIG00000021004	-	98	62.182	Amphilophus_citrinellus
ENSCAPG00000014519	PABPC1L	99	59.752	ENSAOCG00000006167	-	98	60.862	Amphiprion_ocellaris
ENSCAPG00000014519	PABPC1L	99	61.232	ENSAPEG00000010558	-	97	72.414	Amphiprion_percula
ENSCAPG00000014519	PABPC1L	99	63.388	ENSATEG00000007428	pabpc1l	98	63.853	Anabas_testudineus
ENSCAPG00000014519	PABPC1L	99	68.941	ENSAPLG00000008415	PABPC1L	98	68.941	Anas_platyrhynchos
ENSCAPG00000014519	PABPC1L	99	67.207	ENSACAG00000011841	PABPC1L	97	67.207	Anolis_carolinensis
ENSCAPG00000014519	PABPC1L	100	78.142	ENSANAG00000026826	PABPC1L	99	78.142	Aotus_nancymaae
ENSCAPG00000014519	PABPC1L	99	61.400	ENSACLG00000024791	pabpc1l	98	61.400	Astatotilapia_calliptera
ENSCAPG00000014519	PABPC1L	99	64.376	ENSAMXG00000013552	pabpc1l	98	64.376	Astyanax_mexicanus
ENSCAPG00000014519	PABPC1L	55	93.878	ENSBTAG00000055300	-	95	93.878	Bos_taurus
ENSCAPG00000014519	PABPC1L	66	70.251	ENSBTAG00000016849	PABPC1L	84	70.251	Bos_taurus
ENSCAPG00000014519	PABPC1L	100	78.689	ENSCJAG00000017628	PABPC1L	99	78.689	Callithrix_jacchus
ENSCAPG00000014519	PABPC1L	56	72.816	ENSCJAG00000038506	-	94	72.816	Callithrix_jacchus
ENSCAPG00000014519	PABPC1L	98	67.986	ENSCAFG00000009573	PABPC1L	99	67.986	Canis_familiaris
ENSCAPG00000014519	PABPC1L	99	78.821	ENSCAFG00020013828	PABPC1L	98	78.821	Canis_lupus_dingo
ENSCAPG00000014519	PABPC1L	97	75.895	ENSCHIG00000025759	PABPC1L	90	75.895	Capra_hircus
ENSCAPG00000014519	PABPC1L	100	77.960	ENSTSYG00000006645	PABPC1L	99	77.960	Carlito_syrichta
ENSCAPG00000014519	PABPC1L	100	96.350	ENSCPOG00000013633	PABPC1L	99	96.350	Cavia_porcellus
ENSCAPG00000014519	PABPC1L	100	78.689	ENSCCAG00000023338	PABPC1L	99	78.689	Cebus_capucinus
ENSCAPG00000014519	PABPC1L	100	80.328	ENSCATG00000034065	PABPC1L	99	80.328	Cercocebus_atys
ENSCAPG00000014519	PABPC1L	100	89.964	ENSCLAG00000005298	PABPC1L	99	90.146	Chinchilla_lanigera
ENSCAPG00000014519	PABPC1L	100	80.510	ENSCSAG00000014242	PABPC1L	99	80.510	Chlorocebus_sabaeus
ENSCAPG00000014519	PABPC1L	68	75.000	ENSCPBG00000017755	-	97	75.000	Chrysemys_picta_bellii
ENSCAPG00000014519	PABPC1L	58	76.577	ENSCPBG00000007810	-	83	76.577	Chrysemys_picta_bellii
ENSCAPG00000014519	PABPC1L	94	49.485	ENSCING00000002796	-	97	49.076	Ciona_intestinalis
ENSCAPG00000014519	PABPC1L	98	55.535	ENSCSAVG00000004246	-	77	77.108	Ciona_savignyi
ENSCAPG00000014519	PABPC1L	98	53.585	ENSCSAVG00000003102	-	100	75.294	Ciona_savignyi
ENSCAPG00000014519	PABPC1L	100	75.269	ENSCANG00000037530	PABPC1L	99	75.269	Colobus_angolensis_palliatus
ENSCAPG00000014519	PABPC1L	99	75.791	ENSCGRG00001021938	Pabpc1l	99	75.791	Cricetulus_griseus_chok1gshd
ENSCAPG00000014519	PABPC1L	99	75.791	ENSCGRG00000007946	Pabpc1l	99	75.791	Cricetulus_griseus_crigri
ENSCAPG00000014519	PABPC1L	99	59.701	ENSCSEG00000021295	pabpc1l	98	59.701	Cynoglossus_semilaevis
ENSCAPG00000014519	PABPC1L	99	64.140	ENSCVAG00000015943	-	98	64.457	Cyprinodon_variegatus
ENSCAPG00000014519	PABPC1L	99	65.154	ENSDARG00000002597	pabpc1l	86	86.667	Danio_rerio
ENSCAPG00000014519	PABPC1L	99	79.562	ENSDNOG00000048450	PABPC1L	99	79.562	Dasypus_novemcinctus
ENSCAPG00000014519	PABPC1L	99	79.159	ENSDORG00000001067	Pabpc1l	99	79.159	Dipodomys_ordii
ENSCAPG00000014519	PABPC1L	95	86.364	ENSETEG00000009969	PABPC1L	70	86.364	Echinops_telfairi
ENSCAPG00000014519	PABPC1L	55	93.878	ENSEASG00005023408	-	100	93.878	Equus_asinus_asinus
ENSCAPG00000014519	PABPC1L	72	62.185	ENSEASG00005023407	-	89	62.185	Equus_asinus_asinus
ENSCAPG00000014519	PABPC1L	63	78.879	ENSECAG00000040139	-	83	78.879	Equus_caballus
ENSCAPG00000014519	PABPC1L	100	74.499	ENSEEUG00000005978	PABPC1L	99	74.499	Erinaceus_europaeus
ENSCAPG00000014519	PABPC1L	99	63.929	ENSELUG00000001811	pabpc1l	99	63.929	Esox_lucius
ENSCAPG00000014519	PABPC1L	99	78.637	ENSFCAG00000011692	PABPC1L	98	78.637	Felis_catus
ENSCAPG00000014519	PABPC1L	79	71.034	ENSFALG00000005372	PABPC1L	83	71.034	Ficedula_albicollis
ENSCAPG00000014519	PABPC1L	100	83.670	ENSFDAG00000008291	PABPC1L	99	84.954	Fukomys_damarensis
ENSCAPG00000014519	PABPC1L	99	63.303	ENSFHEG00000003398	pabpc1l	98	63.303	Fundulus_heteroclitus
ENSCAPG00000014519	PABPC1L	99	63.787	ENSGMOG00000004437	pabpc1l	97	63.787	Gadus_morhua
ENSCAPG00000014519	PABPC1L	99	65.602	ENSGALG00000004123	PABPC1L	95	77.876	Gallus_gallus
ENSCAPG00000014519	PABPC1L	99	59.380	ENSGAFG00000021057	pabpc1l	98	59.380	Gambusia_affinis
ENSCAPG00000014519	PABPC1L	99	61.191	ENSGACG00000002792	pabpc1l	99	61.191	Gasterosteus_aculeatus
ENSCAPG00000014519	PABPC1L	99	69.009	ENSGAGG00000000589	PABPC1L	97	69.009	Gopherus_agassizii
ENSCAPG00000014519	PABPC1L	100	80.874	ENSGGOG00000004584	PABPC1L	99	80.874	Gorilla_gorilla
ENSCAPG00000014519	PABPC1L	99	61.236	ENSHBUG00000006134	pabpc1l	98	61.236	Haplochromis_burtoni
ENSCAPG00000014519	PABPC1L	100	89.617	ENSHGLG00000008434	PABPC1L	99	89.617	Heterocephalus_glaber_female
ENSCAPG00000014519	PABPC1L	100	89.617	ENSHGLG00100012151	PABPC1L	99	89.617	Heterocephalus_glaber_male
ENSCAPG00000014519	PABPC1L	57	77.778	ENSHGLG00100019506	-	98	77.778	Heterocephalus_glaber_male
ENSCAPG00000014519	PABPC1L	98	62.069	ENSHCOG00000009270	pabpc1l	98	62.069	Hippocampus_comes
ENSCAPG00000014519	PABPC1L	57	58.182	ENSIPUG00000006760	-	87	58.182	Ictalurus_punctatus
ENSCAPG00000014519	PABPC1L	99	64.982	ENSIPUG00000012602	pabpc1l	98	64.982	Ictalurus_punctatus
ENSCAPG00000014519	PABPC1L	60	59.091	ENSIPUG00000006780	-	89	59.091	Ictalurus_punctatus
ENSCAPG00000014519	PABPC1L	100	81.273	ENSSTOG00000003739	PABPC1L	99	81.273	Ictidomys_tridecemlineatus
ENSCAPG00000014519	PABPC1L	95	69.630	ENSJJAG00000022406	Pabpc1l	99	69.573	Jaculus_jaculus
ENSCAPG00000014519	PABPC1L	99	63.553	ENSKMAG00000016847	pabpc1l	99	63.553	Kryptolebias_marmoratus
ENSCAPG00000014519	PABPC1L	99	60.289	ENSLBEG00000010084	pabpc1l	99	60.289	Labrus_bergylta
ENSCAPG00000014519	PABPC1L	99	62.679	ENSLACG00000005762	PABPC1L	98	64.000	Latimeria_chalumnae
ENSCAPG00000014519	PABPC1L	99	65.162	ENSLOCG00000007519	pabpc1l	97	65.162	Lepisosteus_oculatus
ENSCAPG00000014519	PABPC1L	99	77.437	ENSLAFG00000003553	PABPC1L	99	77.437	Loxodonta_africana
ENSCAPG00000014519	PABPC1L	100	80.146	ENSMFAG00000040365	PABPC1L	99	80.146	Macaca_fascicularis
ENSCAPG00000014519	PABPC1L	100	77.536	ENSMNEG00000032298	PABPC1L	99	77.536	Macaca_nemestrina
ENSCAPG00000014519	PABPC1L	100	80.328	ENSMLEG00000043139	PABPC1L	99	80.328	Mandrillus_leucophaeus
ENSCAPG00000014519	PABPC1L	96	61.296	ENSMAMG00000011854	pabpc1l	97	61.296	Mastacembelus_armatus
ENSCAPG00000014519	PABPC1L	99	61.400	ENSMZEG00005023713	pabpc1l	98	61.400	Maylandia_zebra
ENSCAPG00000014519	PABPC1L	99	69.091	ENSMGAG00000003674	PABPC1L	97	69.091	Meleagris_gallopavo
ENSCAPG00000014519	PABPC1L	99	74.254	ENSMOCG00000013186	Pabpc1l	99	74.254	Microtus_ochrogaster
ENSCAPG00000014519	PABPC1L	99	62.409	ENSMMOG00000020574	-	83	83.333	Mola_mola
ENSCAPG00000014519	PABPC1L	93	70.291	ENSMODG00000016198	PABPC1L	98	70.301	Monodelphis_domestica
ENSCAPG00000014519	PABPC1L	99	57.411	ENSMALG00000021622	pabpc1l	99	59.963	Monopterus_albus
ENSCAPG00000014519	PABPC1L	99	75.752	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	75.752	Mus_caroli
ENSCAPG00000014519	PABPC1L	99	75.376	ENSMUSG00000054582	Pabpc1l	99	75.376	Mus_musculus
ENSCAPG00000014519	PABPC1L	99	76.173	MGP_PahariEiJ_G0026071	Pabpc1l	99	76.173	Mus_pahari
ENSCAPG00000014519	PABPC1L	99	75.564	MGP_SPRETEiJ_G0025549	Pabpc1l	99	75.564	Mus_spretus
ENSCAPG00000014519	PABPC1L	99	76.951	ENSMPUG00000017646	PABPC1L	97	76.951	Mustela_putorius_furo
ENSCAPG00000014519	PABPC1L	97	72.263	ENSMLUG00000006324	PABPC1L	96	72.263	Myotis_lucifugus
ENSCAPG00000014519	PABPC1L	99	77.654	ENSNGAG00000010458	Pabpc1l	99	77.654	Nannospalax_galili
ENSCAPG00000014519	PABPC1L	99	68.835	ENSNBRG00000016633	pabpc1l	99	68.835	Neolamprologus_brichardi
ENSCAPG00000014519	PABPC1L	100	60.989	ENSMEUG00000007905	-	98	60.989	Notamacropus_eugenii
ENSCAPG00000014519	PABPC1L	100	77.636	ENSOPRG00000011846	PABPC1L	99	77.636	Ochotona_princeps
ENSCAPG00000014519	PABPC1L	100	78.860	ENSODEG00000015482	PABPC1L	99	78.860	Octodon_degus
ENSCAPG00000014519	PABPC1L	54	78.889	ENSODEG00000002920	-	89	78.889	Octodon_degus
ENSCAPG00000014519	PABPC1L	99	61.400	ENSONIG00000017314	pabpc1l	98	61.400	Oreochromis_niloticus
ENSCAPG00000014519	PABPC1L	88	59.305	ENSOANG00000015793	-	98	59.305	Ornithorhynchus_anatinus
ENSCAPG00000014519	PABPC1L	99	72.945	ENSOCUG00000003005	PABPC1L	99	72.945	Oryctolagus_cuniculus
ENSCAPG00000014519	PABPC1L	99	62.295	ENSORLG00000010322	pabpc1l	97	67.102	Oryzias_latipes
ENSCAPG00000014519	PABPC1L	99	61.931	ENSORLG00020021193	pabpc1l	97	67.102	Oryzias_latipes_hni
ENSCAPG00000014519	PABPC1L	99	62.113	ENSORLG00015017018	pabpc1l	97	67.102	Oryzias_latipes_hsok
ENSCAPG00000014519	PABPC1L	99	58.291	ENSOMEG00000010789	pabpc1l	98	58.291	Oryzias_melastigma
ENSCAPG00000014519	PABPC1L	99	76.565	ENSOGAG00000032999	PABPC1L	99	76.565	Otolemur_garnettii
ENSCAPG00000014519	PABPC1L	99	77.819	ENSOARG00000004578	PABPC1L	98	77.819	Ovis_aries
ENSCAPG00000014519	PABPC1L	100	80.510	ENSPPAG00000039677	PABPC1L	99	80.510	Pan_paniscus
ENSCAPG00000014519	PABPC1L	59	74.409	ENSPPRG00000019327	-	95	74.409	Panthera_pardus
ENSCAPG00000014519	PABPC1L	99	78.637	ENSPTIG00000006524	PABPC1L	99	78.637	Panthera_tigris_altaica
ENSCAPG00000014519	PABPC1L	62	88.976	ENSPTRG00000013531	PABPC1L	96	88.976	Pan_troglodytes
ENSCAPG00000014519	PABPC1L	100	80.328	ENSPANG00000018788	PABPC1L	99	80.328	Papio_anubis
ENSCAPG00000014519	PABPC1L	99	64.209	ENSPKIG00000007322	pabpc1l	98	64.209	Paramormyrops_kingsleyae
ENSCAPG00000014519	PABPC1L	63	76.232	ENSPSIG00000013289	PABPC1L	96	76.232	Pelodiscus_sinensis
ENSCAPG00000014519	PABPC1L	58	71.724	ENSPMGG00000023117	pabpc1l	88	80.645	Periophthalmus_magnuspinnatus
ENSCAPG00000014519	PABPC1L	64	62.944	ENSPMGG00000023121	-	92	62.944	Periophthalmus_magnuspinnatus
ENSCAPG00000014519	PABPC1L	99	75.422	ENSPEMG00000020671	Pabpc1l	99	75.422	Peromyscus_maniculatus_bairdii
ENSCAPG00000014519	PABPC1L	99	63.956	ENSPFOG00000013241	pabpc1l	98	63.158	Poecilia_formosa
ENSCAPG00000014519	PABPC1L	99	63.158	ENSPLAG00000017490	-	98	63.158	Poecilia_latipinna
ENSCAPG00000014519	PABPC1L	99	63.254	ENSPMEG00000007677	pabpc1l	98	63.254	Poecilia_mexicana
ENSCAPG00000014519	PABPC1L	62	72.024	ENSPREG00000015886	pabpc1l	97	72.024	Poecilia_reticulata
ENSCAPG00000014519	PABPC1L	100	80.692	ENSPPYG00000011042	PABPC1L	99	80.692	Pongo_abelii
ENSCAPG00000014519	PABPC1L	58	57.551	ENSPCAG00000011787	-	59	57.551	Procavia_capensis
ENSCAPG00000014519	PABPC1L	99	78.782	ENSPCOG00000020630	PABPC1L	98	78.782	Propithecus_coquereli
ENSCAPG00000014519	PABPC1L	99	75.691	ENSPVAG00000012663	PABPC1L	98	75.691	Pteropus_vampyrus
ENSCAPG00000014519	PABPC1L	99	68.835	ENSPNYG00000004101	pabpc1l	99	68.835	Pundamilia_nyererei
ENSCAPG00000014519	PABPC1L	99	58.333	ENSPNAG00000021248	pabpc1l	98	58.333	Pygocentrus_nattereri
ENSCAPG00000014519	PABPC1L	99	75.093	ENSRNOG00000012750	Pabpc1l	99	75.093	Rattus_norvegicus
ENSCAPG00000014519	PABPC1L	100	80.328	ENSRBIG00000035381	PABPC1L	99	80.328	Rhinopithecus_bieti
ENSCAPG00000014519	PABPC1L	100	79.964	ENSRROG00000044498	PABPC1L	99	79.964	Rhinopithecus_roxellana
ENSCAPG00000014519	PABPC1L	100	78.142	ENSSBOG00000009532	-	99	78.142	Saimiri_boliviensis_boliviensis
ENSCAPG00000014519	PABPC1L	95	68.238	ENSSHAG00000011446	PABPC1L	100	68.238	Sarcophilus_harrisii
ENSCAPG00000014519	PABPC1L	99	65.233	ENSSFOG00015017304	pabpc1l	98	65.233	Scleropages_formosus
ENSCAPG00000014519	PABPC1L	99	62.364	ENSSMAG00000010516	pabpc1l	94	83.051	Scophthalmus_maximus
ENSCAPG00000014519	PABPC1L	99	62.976	ENSSDUG00000014743	pabpc1l	98	62.976	Seriola_dumerili
ENSCAPG00000014519	PABPC1L	96	62.928	ENSSLDG00000006981	pabpc1l	94	69.377	Seriola_lalandi_dorsalis
ENSCAPG00000014519	PABPC1L	99	67.207	ENSSPUG00000004233	PABPC1L	97	67.207	Sphenodon_punctatus
ENSCAPG00000014519	PABPC1L	98	59.623	ENSSPAG00000017137	pabpc1l	97	59.623	Stegastes_partitus
ENSCAPG00000014519	PABPC1L	99	76.155	ENSSSCG00000007382	PABPC1L	98	76.155	Sus_scrofa
ENSCAPG00000014519	PABPC1L	99	66.316	ENSTGUG00000005114	PABPC1L	98	66.316	Taeniopygia_guttata
ENSCAPG00000014519	PABPC1L	96	62.546	ENSTRUG00000011085	pabpc1l	96	62.546	Takifugu_rubripes
ENSCAPG00000014519	PABPC1L	97	61.273	ENSTNIG00000017903	pabpc1l	86	61.273	Tetraodon_nigroviridis
ENSCAPG00000014519	PABPC1L	97	88.288	ENSTBEG00000002851	PABPC1L	79	88.288	Tupaia_belangeri
ENSCAPG00000014519	PABPC1L	93	75.639	ENSTTRG00000007618	PABPC1L	98	75.810	Tursiops_truncatus
ENSCAPG00000014519	PABPC1L	99	77.111	ENSUAMG00000017682	PABPC1L	97	77.111	Ursus_americanus
ENSCAPG00000014519	PABPC1L	67	83.425	ENSUMAG00000025436	PABPC1L	93	83.425	Ursus_maritimus
ENSCAPG00000014519	PABPC1L	99	89.328	ENSVVUG00000018939	PABPC1L	99	89.328	Vulpes_vulpes
ENSCAPG00000014519	PABPC1L	99	63.538	ENSXETG00000022831	pabpc1l	97	63.538	Xenopus_tropicalis
ENSCAPG00000014519	PABPC1L	99	63.653	ENSXCOG00000005459	pabpc1l	95	76.056	Xiphophorus_couchianus
ENSCAPG00000014519	PABPC1L	99	62.842	ENSXMAG00000017135	pabpc1l	98	62.842	Xiphophorus_maculatus