EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000015414 (Gene tree)
Gene ID: -
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 17434 bases
Position: chrAVPZ01000445.1:12779130-12796563
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000015247	PRP21_like_P	PF12230.8	1e-42	1	1
ENSCAPP00000015247	Surp	PF01805.20	3.2e-46	1	2
ENSCAPP00000015247	Surp	PF01805.20	3.2e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000019027	SF3A1-201	2079	-	ENSCAPP00000015247	692 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000015414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000015414's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000015414	SF3A1	98	81.041	ENSG00000099995	SF3A1	100	89.961	Homo_sapiens
ENSCAPG00000015414	SF3A1	97	69.530	ENSAPOG00000020465	sf3a1	95	68.842	Acanthochromis_polyacanthus
ENSCAPG00000015414	SF3A1	98	81.308	ENSAMEG00000007737	SF3A1	94	81.308	Ailuropoda_melanoleuca
ENSCAPG00000015414	SF3A1	98	69.640	ENSACIG00000020672	sf3a1	95	69.241	Amphilophus_citrinellus
ENSCAPG00000015414	SF3A1	99	68.725	ENSAOCG00000003060	sf3a1	97	68.463	Amphiprion_ocellaris
ENSCAPG00000015414	SF3A1	99	68.857	ENSAPEG00000010735	sf3a1	97	68.594	Amphiprion_percula
ENSCAPG00000015414	SF3A1	97	69.251	ENSATEG00000021201	sf3a1	94	69.385	Anabas_testudineus
ENSCAPG00000015414	SF3A1	96	76.902	ENSAPLG00000009057	SF3A1	96	77.036	Anas_platyrhynchos
ENSCAPG00000015414	SF3A1	98	72.324	ENSACAG00000009415	SF3A1	95	72.715	Anolis_carolinensis
ENSCAPG00000015414	SF3A1	98	81.175	ENSANAG00000032045	SF3A1	94	81.175	Aotus_nancymaae
ENSCAPG00000015414	SF3A1	98	69.693	ENSACLG00000012622	sf3a1	95	69.693	Astatotilapia_calliptera
ENSCAPG00000015414	SF3A1	98	68.659	ENSAMXG00000005382	sf3a1	95	68.809	Astyanax_mexicanus
ENSCAPG00000015414	SF3A1	98	81.575	ENSBTAG00000003390	SF3A1	94	81.575	Bos_taurus
ENSCAPG00000015414	SF3A1	71	37.477	WBGene00004188	prp-21	60	42.396	Caenorhabditis_elegans
ENSCAPG00000015414	SF3A1	98	81.175	ENSCJAG00000010370	SF3A1	94	81.175	Callithrix_jacchus
ENSCAPG00000015414	SF3A1	98	81.308	ENSCAFG00000012559	SF3A1	94	81.308	Canis_familiaris
ENSCAPG00000015414	SF3A1	98	81.308	ENSCAFG00020000838	SF3A1	94	81.308	Canis_lupus_dingo
ENSCAPG00000015414	SF3A1	98	81.442	ENSCHIG00000018642	SF3A1	94	81.442	Capra_hircus
ENSCAPG00000015414	SF3A1	98	81.575	ENSTSYG00000004739	SF3A1	94	81.575	Carlito_syrichta
ENSCAPG00000015414	SF3A1	98	81.976	ENSCPOG00000014589	SF3A1	94	81.976	Cavia_porcellus
ENSCAPG00000015414	SF3A1	98	81.175	ENSCCAG00000032006	SF3A1	94	81.175	Cebus_capucinus
ENSCAPG00000015414	SF3A1	98	81.417	ENSCATG00000029241	SF3A1	94	81.417	Cercocebus_atys
ENSCAPG00000015414	SF3A1	99	81.275	ENSCLAG00000006508	SF3A1	95	81.275	Chinchilla_lanigera
ENSCAPG00000015414	SF3A1	98	81.041	ENSCSAG00000009470	SF3A1	94	81.041	Chlorocebus_sabaeus
ENSCAPG00000015414	SF3A1	62	98.039	ENSCHOG00000005201	SF3A1	63	98.039	Choloepus_hoffmanni
ENSCAPG00000015414	SF3A1	99	76.253	ENSCPBG00000007595	SF3A1	96	76.548	Chrysemys_picta_bellii
ENSCAPG00000015414	SF3A1	97	42.590	ENSCING00000008526	-	67	53.759	Ciona_intestinalis
ENSCAPG00000015414	SF3A1	97	42.714	ENSCSAVG00000005608	-	76	52.608	Ciona_savignyi
ENSCAPG00000015414	SF3A1	98	81.041	ENSCANG00000033564	SF3A1	94	81.041	Colobus_angolensis_palliatus
ENSCAPG00000015414	SF3A1	97	81.081	ENSCGRG00001008933	Sf3a1	94	80.908	Cricetulus_griseus_chok1gshd
ENSCAPG00000015414	SF3A1	97	81.081	ENSCGRG00000006127	Sf3a1	94	80.908	Cricetulus_griseus_crigri
ENSCAPG00000015414	SF3A1	97	67.517	ENSCSEG00000010792	sf3a1	95	67.246	Cynoglossus_semilaevis
ENSCAPG00000015414	SF3A1	98	67.553	ENSCVAG00000004560	sf3a1	95	67.287	Cyprinodon_variegatus
ENSCAPG00000015414	SF3A1	97	67.925	ENSDARG00000041887	sf3a1	88	85.430	Danio_rerio
ENSCAPG00000015414	SF3A1	98	81.225	ENSDNOG00000010629	SF3A1	94	80.826	Dasypus_novemcinctus
ENSCAPG00000015414	SF3A1	98	81.575	ENSDORG00000005613	Sf3a1	94	81.575	Dipodomys_ordii
ENSCAPG00000015414	SF3A1	78	51.782	FBgn0266917	Sf3a1	80	51.197	Drosophila_melanogaster
ENSCAPG00000015414	SF3A1	87	82.934	ENSETEG00000017194	SF3A1	95	82.934	Echinops_telfairi
ENSCAPG00000015414	SF3A1	98	53.788	ENSEBUG00000001285	sf3a1	92	53.706	Eptatretus_burgeri
ENSCAPG00000015414	SF3A1	98	81.575	ENSEASG00005010254	SF3A1	94	81.575	Equus_asinus_asinus
ENSCAPG00000015414	SF3A1	98	81.575	ENSECAG00000023962	SF3A1	94	81.575	Equus_caballus
ENSCAPG00000015414	SF3A1	72	77.735	ENSEEUG00000003159	SF3A1	80	77.282	Erinaceus_europaeus
ENSCAPG00000015414	SF3A1	97	67.204	ENSELUG00000022578	sf3a1	94	68.044	Esox_lucius
ENSCAPG00000015414	SF3A1	98	81.308	ENSFCAG00000011932	SF3A1	94	81.308	Felis_catus
ENSCAPG00000015414	SF3A1	96	75.918	ENSFALG00000006944	SF3A1	95	75.729	Ficedula_albicollis
ENSCAPG00000015414	SF3A1	98	81.442	ENSFDAG00000009560	SF3A1	94	81.442	Fukomys_damarensis
ENSCAPG00000015414	SF3A1	98	68.966	ENSFHEG00000010866	sf3a1	95	68.435	Fundulus_heteroclitus
ENSCAPG00000015414	SF3A1	97	66.846	ENSGMOG00000016024	sf3a1	94	65.421	Gadus_morhua
ENSCAPG00000015414	SF3A1	96	77.143	ENSGALG00000007937	SF3A1	95	76.393	Gallus_gallus
ENSCAPG00000015414	SF3A1	97	68.456	ENSGAFG00000009111	sf3a1	94	67.968	Gambusia_affinis
ENSCAPG00000015414	SF3A1	97	67.790	ENSGACG00000011893	sf3a1	94	67.790	Gasterosteus_aculeatus
ENSCAPG00000015414	SF3A1	96	78.125	ENSGAGG00000000762	SF3A1	97	78.155	Gopherus_agassizii
ENSCAPG00000015414	SF3A1	98	81.041	ENSGGOG00000012631	SF3A1	94	81.041	Gorilla_gorilla
ENSCAPG00000015414	SF3A1	98	69.693	ENSHBUG00000015795	sf3a1	95	69.693	Haplochromis_burtoni
ENSCAPG00000015414	SF3A1	98	81.709	ENSHGLG00000007907	SF3A1	94	81.709	Heterocephalus_glaber_female
ENSCAPG00000015414	SF3A1	98	81.709	ENSHGLG00100013799	SF3A1	94	81.709	Heterocephalus_glaber_male
ENSCAPG00000015414	SF3A1	97	66.488	ENSHCOG00000015423	sf3a1	95	66.263	Hippocampus_comes
ENSCAPG00000015414	SF3A1	97	65.775	ENSIPUG00000002470	sf3a1	95	66.176	Ictalurus_punctatus
ENSCAPG00000015414	SF3A1	98	81.442	ENSSTOG00000013892	SF3A1	94	81.442	Ictidomys_tridecemlineatus
ENSCAPG00000015414	SF3A1	98	81.442	ENSJJAG00000022566	Sf3a1	94	81.442	Jaculus_jaculus
ENSCAPG00000015414	SF3A1	98	67.781	ENSKMAG00000002400	sf3a1	95	67.914	Kryptolebias_marmoratus
ENSCAPG00000015414	SF3A1	98	67.867	ENSLBEG00000022974	sf3a1	95	67.914	Labrus_bergylta
ENSCAPG00000015414	SF3A1	97	72.922	ENSLACG00000003565	SF3A1	94	73.190	Latimeria_chalumnae
ENSCAPG00000015414	SF3A1	98	70.292	ENSLOCG00000008251	sf3a1	95	70.292	Lepisosteus_oculatus
ENSCAPG00000015414	SF3A1	98	80.908	ENSLAFG00000000448	SF3A1	94	80.908	Loxodonta_africana
ENSCAPG00000015414	SF3A1	94	53.717	ENSLAFG00000026032	-	90	53.015	Loxodonta_africana
ENSCAPG00000015414	SF3A1	98	80.908	ENSMFAG00000031979	SF3A1	94	80.908	Macaca_fascicularis
ENSCAPG00000015414	SF3A1	98	81.150	ENSMMUG00000005547	SF3A1	100	89.575	Macaca_mulatta
ENSCAPG00000015414	SF3A1	98	80.774	ENSMNEG00000037229	SF3A1	94	80.774	Macaca_nemestrina
ENSCAPG00000015414	SF3A1	98	81.041	ENSMLEG00000041908	SF3A1	94	81.041	Mandrillus_leucophaeus
ENSCAPG00000015414	SF3A1	98	69.519	ENSMAMG00000006460	sf3a1	93	69.652	Mastacembelus_armatus
ENSCAPG00000015414	SF3A1	98	69.693	ENSMZEG00005009633	sf3a1	95	69.693	Maylandia_zebra
ENSCAPG00000015414	SF3A1	96	77.143	ENSMGAG00000001330	SF3A1	97	76.872	Meleagris_gallopavo
ENSCAPG00000015414	SF3A1	93	77.809	ENSMAUG00000020317	Sf3a1	91	77.809	Mesocricetus_auratus
ENSCAPG00000015414	SF3A1	98	80.908	ENSMICG00000010038	SF3A1	94	80.908	Microcebus_murinus
ENSCAPG00000015414	SF3A1	98	80.908	ENSMOCG00000008438	Sf3a1	94	80.908	Microtus_ochrogaster
ENSCAPG00000015414	SF3A1	98	67.568	ENSMMOG00000015588	sf3a1	95	67.432	Mola_mola
ENSCAPG00000015414	SF3A1	98	79.439	ENSMODG00000009270	SF3A1	94	79.840	Monodelphis_domestica
ENSCAPG00000015414	SF3A1	97	69.624	ENSMALG00000000148	sf3a1	96	68.627	Monopterus_albus
ENSCAPG00000015414	SF3A1	98	80.774	MGP_CAROLIEiJ_G0016029	Sf3a1	94	80.774	Mus_caroli
ENSCAPG00000015414	SF3A1	98	80.774	ENSMUSG00000002129	Sf3a1	94	80.774	Mus_musculus
ENSCAPG00000015414	SF3A1	98	80.641	MGP_PahariEiJ_G0016862	Sf3a1	94	80.641	Mus_pahari
ENSCAPG00000015414	SF3A1	98	80.774	MGP_SPRETEiJ_G0016870	Sf3a1	94	80.774	Mus_spretus
ENSCAPG00000015414	SF3A1	98	81.175	ENSMPUG00000013144	SF3A1	94	81.175	Mustela_putorius_furo
ENSCAPG00000015414	SF3A1	98	81.308	ENSMLUG00000002139	SF3A1	94	81.308	Myotis_lucifugus
ENSCAPG00000015414	SF3A1	98	81.442	ENSNGAG00000016977	Sf3a1	94	81.442	Nannospalax_galili
ENSCAPG00000015414	SF3A1	96	70.325	ENSNBRG00000016642	sf3a1	94	70.325	Neolamprologus_brichardi
ENSCAPG00000015414	SF3A1	98	81.041	ENSNLEG00000003686	SF3A1	94	81.041	Nomascus_leucogenys
ENSCAPG00000015414	SF3A1	96	77.747	ENSMEUG00000008741	SF3A1	96	76.511	Notamacropus_eugenii
ENSCAPG00000015414	SF3A1	98	81.041	ENSOPRG00000016636	SF3A1	94	81.041	Ochotona_princeps
ENSCAPG00000015414	SF3A1	98	81.442	ENSODEG00000002571	SF3A1	94	81.442	Octodon_degus
ENSCAPG00000015414	SF3A1	98	69.478	ENSONIG00000010848	sf3a1	95	69.067	Oreochromis_niloticus
ENSCAPG00000015414	SF3A1	98	81.308	ENSOCUG00000007633	SF3A1	94	81.308	Oryctolagus_cuniculus
ENSCAPG00000015414	SF3A1	95	69.252	ENSORLG00000013050	sf3a1	97	69.241	Oryzias_latipes
ENSCAPG00000015414	SF3A1	97	68.733	ENSORLG00020003236	sf3a1	95	68.074	Oryzias_latipes_hni
ENSCAPG00000015414	SF3A1	97	67.876	ENSORLG00015017411	sf3a1	94	68.548	Oryzias_latipes_hsok
ENSCAPG00000015414	SF3A1	98	68.000	ENSOMEG00000013362	sf3a1	95	67.867	Oryzias_melastigma
ENSCAPG00000015414	SF3A1	98	81.175	ENSOGAG00000012931	SF3A1	94	81.175	Otolemur_garnettii
ENSCAPG00000015414	SF3A1	98	79.172	ENSOARG00000006849	SF3A1	94	79.172	Ovis_aries
ENSCAPG00000015414	SF3A1	98	79.973	ENSPPAG00000041790	SF3A1	94	79.973	Pan_paniscus
ENSCAPG00000015414	SF3A1	98	81.308	ENSPPRG00000004391	SF3A1	94	81.308	Panthera_pardus
ENSCAPG00000015414	SF3A1	98	81.308	ENSPTIG00000000844	SF3A1	97	81.308	Panthera_tigris_altaica
ENSCAPG00000015414	SF3A1	98	81.041	ENSPTRG00000014240	SF3A1	94	81.041	Pan_troglodytes
ENSCAPG00000015414	SF3A1	98	81.041	ENSPANG00000020772	SF3A1	94	81.041	Papio_anubis
ENSCAPG00000015414	SF3A1	82	73.462	ENSPSIG00000012803	SF3A1	92	75.940	Pelodiscus_sinensis
ENSCAPG00000015414	SF3A1	97	67.930	ENSPMGG00000023096	sf3a1	97	67.476	Periophthalmus_magnuspinnatus
ENSCAPG00000015414	SF3A1	97	81.216	ENSPEMG00000009494	Sf3a1	94	81.041	Peromyscus_maniculatus_bairdii
ENSCAPG00000015414	SF3A1	64	65.166	ENSPMAG00000007139	-	89	63.931	Petromyzon_marinus
ENSCAPG00000015414	SF3A1	98	79.600	ENSPCIG00000022692	SF3A1	94	79.867	Phascolarctos_cinereus
ENSCAPG00000015414	SF3A1	93	63.291	ENSPFOG00000016768	sf3a1	91	62.729	Poecilia_formosa
ENSCAPG00000015414	SF3A1	97	68.725	ENSPLAG00000017268	sf3a1	94	68.188	Poecilia_latipinna
ENSCAPG00000015414	SF3A1	84	68.111	ENSPMEG00000019811	sf3a1	95	67.337	Poecilia_mexicana
ENSCAPG00000015414	SF3A1	97	68.859	ENSPREG00000010347	sf3a1	94	68.591	Poecilia_reticulata
ENSCAPG00000015414	SF3A1	98	81.041	ENSPPYG00000011707	SF3A1	94	81.041	Pongo_abelii
ENSCAPG00000015414	SF3A1	59	92.237	ENSPCAG00000003266	SF3A1	54	84.783	Procavia_capensis
ENSCAPG00000015414	SF3A1	98	81.041	ENSPCOG00000026630	SF3A1	94	81.041	Propithecus_coquereli
ENSCAPG00000015414	SF3A1	95	80.000	ENSPVAG00000017719	SF3A1	91	80.000	Pteropus_vampyrus
ENSCAPG00000015414	SF3A1	98	69.693	ENSPNYG00000018706	sf3a1	95	69.693	Pundamilia_nyererei
ENSCAPG00000015414	SF3A1	98	67.925	ENSPNAG00000003721	sf3a1	96	68.568	Pygocentrus_nattereri
ENSCAPG00000015414	SF3A1	98	80.908	ENSRNOG00000005218	Sf3a1	94	80.908	Rattus_norvegicus
ENSCAPG00000015414	SF3A1	98	81.175	ENSRBIG00000032167	SF3A1	94	81.175	Rhinopithecus_bieti
ENSCAPG00000015414	SF3A1	98	81.175	ENSRROG00000044908	SF3A1	93	83.235	Rhinopithecus_roxellana
ENSCAPG00000015414	SF3A1	93	80.505	ENSSBOG00000021960	SF3A1	96	80.122	Saimiri_boliviensis_boliviensis
ENSCAPG00000015414	SF3A1	98	78.933	ENSSHAG00000003666	SF3A1	95	80.000	Sarcophilus_harrisii
ENSCAPG00000015414	SF3A1	97	69.067	ENSSFOG00015004579	sf3a1	96	69.201	Scleropages_formosus
ENSCAPG00000015414	SF3A1	97	67.204	ENSSMAG00000004275	sf3a1	95	66.578	Scophthalmus_maximus
ENSCAPG00000015414	SF3A1	98	69.067	ENSSDUG00000022219	sf3a1	95	68.667	Seriola_dumerili
ENSCAPG00000015414	SF3A1	98	69.067	ENSSLDG00000012642	sf3a1	95	68.667	Seriola_lalandi_dorsalis
ENSCAPG00000015414	SF3A1	98	77.207	ENSSARG00000005960	SF3A1	97	77.207	Sorex_araneus
ENSCAPG00000015414	SF3A1	97	75.766	ENSSPUG00000018863	SF3A1	95	76.278	Sphenodon_punctatus
ENSCAPG00000015414	SF3A1	97	70.027	ENSSPAG00000011856	sf3a1	95	69.200	Stegastes_partitus
ENSCAPG00000015414	SF3A1	98	81.308	ENSSSCG00000010002	SF3A1	94	83.382	Sus_scrofa
ENSCAPG00000015414	SF3A1	96	77.069	ENSTGUG00000010547	SF3A1	97	76.933	Taeniopygia_guttata
ENSCAPG00000015414	SF3A1	97	66.129	ENSTRUG00000006118	sf3a1	96	65.252	Takifugu_rubripes
ENSCAPG00000015414	SF3A1	50	66.296	ENSTNIG00000005713	sf3a1	75	69.259	Tetraodon_nigroviridis
ENSCAPG00000015414	SF3A1	89	82.647	ENSTBEG00000012771	SF3A1	85	82.647	Tupaia_belangeri
ENSCAPG00000015414	SF3A1	98	81.200	ENSTTRG00000001535	SF3A1	94	81.200	Tursiops_truncatus
ENSCAPG00000015414	SF3A1	98	81.175	ENSUAMG00000006750	SF3A1	94	81.175	Ursus_americanus
ENSCAPG00000015414	SF3A1	99	80.481	ENSUMAG00000016665	SF3A1	96	80.560	Ursus_maritimus
ENSCAPG00000015414	SF3A1	98	81.308	ENSVVUG00000003075	SF3A1	94	81.308	Vulpes_vulpes
ENSCAPG00000015414	SF3A1	97	71.854	ENSXETG00000016144	sf3a1	90	78.261	Xenopus_tropicalis
ENSCAPG00000015414	SF3A1	97	68.456	ENSXCOG00000015653	sf3a1	94	67.968	Xiphophorus_couchianus
ENSCAPG00000015414	SF3A1	97	68.775	ENSXMAG00000002753	sf3a1	95	68.286	Xiphophorus_maculatus