EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000016197 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 214087 bases
Position: chrAVPZ01000256.1:20183530-20397616
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000016292	EST1	PF10374.9	1e-14	1	1
ENSCAPP00000016287	EST1	PF10374.9	1.1e-14	1	1
ENSCAPP00000016287	EST1_DNA_bind	PF10373.9	4.2e-36	1	1
ENSCAPP00000016292	EST1_DNA_bind	PF10373.9	1.1e-34	1	2
ENSCAPP00000016292	EST1_DNA_bind	PF10373.9	1.1e-34	2	2
ENSCAPP00000016292	PIN_4	PF13638.6	3.9e-21	1	1
ENSCAPP00000016287	PIN_4	PF13638.6	4.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000020078	SMG6-201	3774	-	ENSCAPP00000016287	1257 (aa)	-	-
ENSCAPT00000020083	SMG6-202	3612	-	ENSCAPP00000016292	1203 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000016197's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000016197's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000016197	SMG6	99	82.904	ENSG00000070366	SMG6	89	93.496	Homo_sapiens
ENSCAPG00000016197	SMG6	81	49.318	ENSAPOG00000019448	smg6	68	52.070	Acanthochromis_polyacanthus
ENSCAPG00000016197	SMG6	99	83.138	ENSAMEG00000007632	SMG6	98	77.266	Ailuropoda_melanoleuca
ENSCAPG00000016197	SMG6	67	55.476	ENSACIG00000012997	smg6	98	42.091	Amphilophus_citrinellus
ENSCAPG00000016197	SMG6	81	48.864	ENSAOCG00000002630	smg6	67	53.182	Amphiprion_ocellaris
ENSCAPG00000016197	SMG6	81	49.091	ENSAPEG00000019101	smg6	67	53.409	Amphiprion_percula
ENSCAPG00000016197	SMG6	84	52.727	ENSATEG00000006483	smg6	69	51.613	Anabas_testudineus
ENSCAPG00000016197	SMG6	80	80.508	ENSACAG00000011783	SMG6	97	48.065	Anolis_carolinensis
ENSCAPG00000016197	SMG6	99	82.436	ENSANAG00000035760	SMG6	98	77.050	Aotus_nancymaae
ENSCAPG00000016197	SMG6	67	52.982	ENSACLG00000005288	smg6	74	52.982	Astatotilapia_calliptera
ENSCAPG00000016197	SMG6	63	57.045	ENSAMXG00000017326	smg6	90	56.968	Astyanax_mexicanus
ENSCAPG00000016197	SMG6	99	82.201	ENSBTAG00000000267	SMG6	98	76.568	Bos_taurus
ENSCAPG00000016197	SMG6	99	83.607	ENSCJAG00000001820	SMG6	98	76.978	Callithrix_jacchus
ENSCAPG00000016197	SMG6	99	82.436	ENSCAFG00000019260	SMG6	98	77.361	Canis_familiaris
ENSCAPG00000016197	SMG6	99	82.436	ENSCAFG00020009770	SMG6	98	77.361	Canis_lupus_dingo
ENSCAPG00000016197	SMG6	99	82.670	ENSCHIG00000021998	SMG6	98	76.280	Capra_hircus
ENSCAPG00000016197	SMG6	99	83.138	ENSTSYG00000003406	SMG6	98	77.986	Carlito_syrichta
ENSCAPG00000016197	SMG6	99	92.882	ENSCPOG00000014878	SMG6	98	85.119	Cavia_porcellus
ENSCAPG00000016197	SMG6	99	82.436	ENSCCAG00000035801	SMG6	98	77.050	Cebus_capucinus
ENSCAPG00000016197	SMG6	99	82.670	ENSCATG00000031956	SMG6	98	77.122	Cercocebus_atys
ENSCAPG00000016197	SMG6	99	87.033	ENSCLAG00000006748	SMG6	100	80.935	Chinchilla_lanigera
ENSCAPG00000016197	SMG6	99	82.670	ENSCSAG00000013800	SMG6	98	77.266	Chlorocebus_sabaeus
ENSCAPG00000016197	SMG6	56	99.010	ENSCHOG00000005024	-	60	99.010	Choloepus_hoffmanni
ENSCAPG00000016197	SMG6	99	72.422	ENSCPBG00000020369	SMG6	89	72.683	Chrysemys_picta_bellii
ENSCAPG00000016197	SMG6	99	82.670	ENSCANG00000031764	SMG6	99	77.122	Colobus_angolensis_palliatus
ENSCAPG00000016197	SMG6	59	79.679	ENSCGRG00001019595	Smg6	94	79.679	Cricetulus_griseus_chok1gshd
ENSCAPG00000016197	SMG6	96	79.790	ENSCGRG00000007782	Smg6	100	70.870	Cricetulus_griseus_crigri
ENSCAPG00000016197	SMG6	85	55.742	ENSCSEG00000012757	smg6	74	55.742	Cynoglossus_semilaevis
ENSCAPG00000016197	SMG6	73	47.237	ENSCVAG00000012789	smg6	74	44.882	Cyprinodon_variegatus
ENSCAPG00000016197	SMG6	69	55.189	ENSDARG00000100481	smg6	69	55.609	Danio_rerio
ENSCAPG00000016197	SMG6	99	83.138	ENSDNOG00000048283	SMG6	98	77.050	Dasypus_novemcinctus
ENSCAPG00000016197	SMG6	99	83.372	ENSDORG00000016614	Smg6	90	84.309	Dipodomys_ordii
ENSCAPG00000016197	SMG6	50	32.800	FBgn0039260	Smg6	63	32.800	Drosophila_melanogaster
ENSCAPG00000016197	SMG6	88	98.039	ENSETEG00000016790	SMG6	85	98.039	Echinops_telfairi
ENSCAPG00000016197	SMG6	62	53.589	ENSEBUG00000005059	smg6	58	53.589	Eptatretus_burgeri
ENSCAPG00000016197	SMG6	99	82.588	ENSEASG00005009318	SMG6	97	77.401	Equus_asinus_asinus
ENSCAPG00000016197	SMG6	99	82.588	ENSECAG00000006519	SMG6	97	77.256	Equus_caballus
ENSCAPG00000016197	SMG6	94	87.037	ENSEEUG00000003493	SMG6	86	87.037	Erinaceus_europaeus
ENSCAPG00000016197	SMG6	67	56.776	ENSELUG00000005934	smg6	60	57.477	Esox_lucius
ENSCAPG00000016197	SMG6	99	82.904	ENSFCAG00000028817	SMG6	98	77.938	Felis_catus
ENSCAPG00000016197	SMG6	98	73.902	ENSFALG00000006538	SMG6	91	73.902	Ficedula_albicollis
ENSCAPG00000016197	SMG6	99	85.164	ENSFDAG00000015106	SMG6	98	79.856	Fukomys_damarensis
ENSCAPG00000016197	SMG6	81	51.693	ENSFHEG00000013282	smg6	75	45.847	Fundulus_heteroclitus
ENSCAPG00000016197	SMG6	98	74.209	ENSGALG00000003108	SMG6	87	74.209	Gallus_gallus
ENSCAPG00000016197	SMG6	81	48.655	ENSGAFG00000000379	smg6	74	44.781	Gambusia_affinis
ENSCAPG00000016197	SMG6	90	55.819	ENSGACG00000020521	smg6	92	54.054	Gasterosteus_aculeatus
ENSCAPG00000016197	SMG6	99	72.902	ENSGAGG00000025617	SMG6	91	73.415	Gopherus_agassizii
ENSCAPG00000016197	SMG6	99	82.904	ENSGGOG00000017156	SMG6	98	77.482	Gorilla_gorilla
ENSCAPG00000016197	SMG6	67	52.418	ENSHBUG00000021311	smg6	69	52.982	Haplochromis_burtoni
ENSCAPG00000016197	SMG6	99	84.965	ENSHGLG00000012882	SMG6	98	79.598	Heterocephalus_glaber_female
ENSCAPG00000016197	SMG6	99	85.082	ENSHGLG00100017815	SMG6	98	79.670	Heterocephalus_glaber_male
ENSCAPG00000016197	SMG6	66	54.725	ENSHCOG00000008761	smg6	83	48.778	Hippocampus_comes
ENSCAPG00000016197	SMG6	83	54.460	ENSIPUG00000012493	smg6	69	54.460	Ictalurus_punctatus
ENSCAPG00000016197	SMG6	99	83.607	ENSSTOG00000028127	SMG6	98	78.489	Ictidomys_tridecemlineatus
ENSCAPG00000016197	SMG6	78	92.308	ENSJJAG00000015367	Smg6	82	86.014	Jaculus_jaculus
ENSCAPG00000016197	SMG6	70	53.881	ENSKMAG00000000279	smg6	69	53.881	Kryptolebias_marmoratus
ENSCAPG00000016197	SMG6	87	49.892	ENSLBEG00000002184	smg6	70	50.321	Labrus_bergylta
ENSCAPG00000016197	SMG6	62	51.526	ENSLACG00000000806	-	98	52.898	Latimeria_chalumnae
ENSCAPG00000016197	SMG6	69	60.628	ENSLOCG00000006448	smg6	99	44.706	Lepisosteus_oculatus
ENSCAPG00000016197	SMG6	99	82.436	ENSLAFG00000001261	SMG6	98	76.906	Loxodonta_africana
ENSCAPG00000016197	SMG6	99	82.670	ENSMFAG00000003394	SMG6	98	77.266	Macaca_fascicularis
ENSCAPG00000016197	SMG6	99	82.670	ENSMMUG00000023161	SMG6	98	77.338	Macaca_mulatta
ENSCAPG00000016197	SMG6	99	82.670	ENSMNEG00000044592	SMG6	90	83.607	Macaca_nemestrina
ENSCAPG00000016197	SMG6	99	82.670	ENSMLEG00000029353	SMG6	99	76.112	Mandrillus_leucophaeus
ENSCAPG00000016197	SMG6	68	54.215	ENSMAMG00000020119	smg6	72	53.499	Mastacembelus_armatus
ENSCAPG00000016197	SMG6	67	52.907	ENSMZEG00005024736	smg6	69	52.982	Maylandia_zebra
ENSCAPG00000016197	SMG6	71	81.395	ENSMGAG00000005401	-	86	81.395	Meleagris_gallopavo
ENSCAPG00000016197	SMG6	99	83.607	ENSMICG00000012913	SMG6	98	78.921	Microcebus_murinus
ENSCAPG00000016197	SMG6	90	56.934	ENSMMOG00000010883	smg6	83	57.664	Mola_mola
ENSCAPG00000016197	SMG6	99	81.265	ENSMODG00000010622	SMG6	90	81.265	Monodelphis_domestica
ENSCAPG00000016197	SMG6	81	51.927	ENSMALG00000001106	smg6	73	46.118	Monopterus_albus
ENSCAPG00000016197	SMG6	99	83.138	MGP_CAROLIEiJ_G0016729	Smg6	98	76.331	Mus_caroli
ENSCAPG00000016197	SMG6	99	83.138	ENSMUSG00000038290	Smg6	98	76.187	Mus_musculus
ENSCAPG00000016197	SMG6	99	82.904	MGP_PahariEiJ_G0017866	Smg6	98	75.971	Mus_pahari
ENSCAPG00000016197	SMG6	99	83.138	MGP_SPRETEiJ_G0017572	Smg6	98	76.259	Mus_spretus
ENSCAPG00000016197	SMG6	99	82.904	ENSMPUG00000013046	SMG6	98	77.289	Mustela_putorius_furo
ENSCAPG00000016197	SMG6	99	82.670	ENSMLUG00000005739	SMG6	98	77.289	Myotis_lucifugus
ENSCAPG00000016197	SMG6	99	82.201	ENSNGAG00000007287	Smg6	99	76.259	Nannospalax_galili
ENSCAPG00000016197	SMG6	67	55.156	ENSNBRG00000009511	smg6	76	53.630	Neolamprologus_brichardi
ENSCAPG00000016197	SMG6	99	82.904	ENSNLEG00000017171	SMG6	99	77.482	Nomascus_leucogenys
ENSCAPG00000016197	SMG6	99	80.328	ENSMEUG00000015804	SMG6	92	80.328	Notamacropus_eugenii
ENSCAPG00000016197	SMG6	57	97.980	ENSOPRG00000000579	SMG6	85	97.980	Ochotona_princeps
ENSCAPG00000016197	SMG6	99	83.841	ENSODEG00000008038	SMG6	90	84.778	Octodon_degus
ENSCAPG00000016197	SMG6	98	52.995	ENSONIG00000005594	smg6	89	53.211	Oreochromis_niloticus
ENSCAPG00000016197	SMG6	99	82.243	ENSOCUG00000013018	SMG6	98	77.443	Oryctolagus_cuniculus
ENSCAPG00000016197	SMG6	81	50.794	ENSORLG00000003317	smg6	74	45.462	Oryzias_latipes
ENSCAPG00000016197	SMG6	81	50.797	ENSORLG00020015343	smg6	74	45.491	Oryzias_latipes_hni
ENSCAPG00000016197	SMG6	81	50.340	ENSORLG00015020454	smg6	74	45.383	Oryzias_latipes_hsok
ENSCAPG00000016197	SMG6	81	51.020	ENSOMEG00000010838	smg6	75	44.929	Oryzias_melastigma
ENSCAPG00000016197	SMG6	99	82.904	ENSOGAG00000004483	SMG6	98	77.570	Otolemur_garnettii
ENSCAPG00000016197	SMG6	99	82.436	ENSOARG00000015076	SMG6	100	76.136	Ovis_aries
ENSCAPG00000016197	SMG6	99	82.904	ENSPPAG00000043296	SMG6	98	77.482	Pan_paniscus
ENSCAPG00000016197	SMG6	99	82.904	ENSPPRG00000014581	SMG6	98	78.010	Panthera_pardus
ENSCAPG00000016197	SMG6	99	82.904	ENSPTIG00000008925	SMG6	98	78.010	Panthera_tigris_altaica
ENSCAPG00000016197	SMG6	99	82.904	ENSPTRG00000008544	SMG6	98	77.482	Pan_troglodytes
ENSCAPG00000016197	SMG6	99	82.670	ENSPANG00000024588	SMG6	98	77.122	Papio_anubis
ENSCAPG00000016197	SMG6	88	64.808	ENSPSIG00000006660	SMG6	96	57.602	Pelodiscus_sinensis
ENSCAPG00000016197	SMG6	99	52.995	ENSPMGG00000000844	smg6	88	59.031	Periophthalmus_magnuspinnatus
ENSCAPG00000016197	SMG6	99	83.372	ENSPEMG00000020707	Smg6	98	77.122	Peromyscus_maniculatus_bairdii
ENSCAPG00000016197	SMG6	98	54.214	ENSPFOG00000012035	smg6	88	55.069	Poecilia_formosa
ENSCAPG00000016197	SMG6	68	53.592	ENSPLAG00000017660	smg6	67	52.242	Poecilia_latipinna
ENSCAPG00000016197	SMG6	68	53.101	ENSPMEG00000000258	smg6	67	52.915	Poecilia_mexicana
ENSCAPG00000016197	SMG6	68	53.592	ENSPREG00000010066	smg6	74	45.316	Poecilia_reticulata
ENSCAPG00000016197	SMG6	99	80.468	ENSPPYG00000007790	SMG6	98	72.989	Pongo_abelii
ENSCAPG00000016197	SMG6	98	82.683	ENSPCAG00000000552	SMG6	98	74.730	Procavia_capensis
ENSCAPG00000016197	SMG6	99	83.372	ENSPCOG00000020925	SMG6	98	78.273	Propithecus_coquereli
ENSCAPG00000016197	SMG6	76	91.787	ENSPVAG00000002159	SMG6	76	83.138	Pteropus_vampyrus
ENSCAPG00000016197	SMG6	67	55.556	ENSPNYG00000024151	smg6	76	53.864	Pundamilia_nyererei
ENSCAPG00000016197	SMG6	77	54.817	ENSPNAG00000015480	smg6	66	56.776	Pygocentrus_nattereri
ENSCAPG00000016197	SMG6	99	82.670	ENSRNOG00000003041	Smg6	98	76.403	Rattus_norvegicus
ENSCAPG00000016197	SMG6	99	82.201	ENSRBIG00000024746	SMG6	98	77.338	Rhinopithecus_bieti
ENSCAPG00000016197	SMG6	99	82.201	ENSRROG00000030423	SMG6	100	77.410	Rhinopithecus_roxellana
ENSCAPG00000016197	SMG6	99	82.436	ENSSBOG00000022518	SMG6	98	75.252	Saimiri_boliviensis_boliviensis
ENSCAPG00000016197	SMG6	99	80.796	ENSSHAG00000010045	SMG6	90	80.796	Sarcophilus_harrisii
ENSCAPG00000016197	SMG6	71	55.211	ENSSFOG00015005436	smg6	63	57.512	Scleropages_formosus
ENSCAPG00000016197	SMG6	83	49.356	ENSSMAG00000019777	smg6	73	45.319	Scophthalmus_maximus
ENSCAPG00000016197	SMG6	81	52.834	ENSSDUG00000016412	smg6	74	53.153	Seriola_dumerili
ENSCAPG00000016197	SMG6	77	49.620	ENSSLDG00000020747	smg6	85	41.931	Seriola_lalandi_dorsalis
ENSCAPG00000016197	SMG6	99	71.059	ENSSPUG00000007152	SMG6	89	71.845	Sphenodon_punctatus
ENSCAPG00000016197	SMG6	67	52.023	ENSSPAG00000015633	smg6	67	53.409	Stegastes_partitus
ENSCAPG00000016197	SMG6	99	82.436	ENSSSCG00000017826	SMG6	98	76.801	Sus_scrofa
ENSCAPG00000016197	SMG6	99	72.365	ENSTGUG00000005836	SMG6	90	72.365	Taeniopygia_guttata
ENSCAPG00000016197	SMG6	99	42.091	ENSTRUG00000000358	smg6	94	42.366	Takifugu_rubripes
ENSCAPG00000016197	SMG6	98	49.306	ENSTNIG00000016164	smg6	89	55.658	Tetraodon_nigroviridis
ENSCAPG00000016197	SMG6	95	83.377	ENSTBEG00000011424	SMG6	92	84.433	Tupaia_belangeri
ENSCAPG00000016197	SMG6	88	93.750	ENSTTRG00000001175	SMG6	81	93.750	Tursiops_truncatus
ENSCAPG00000016197	SMG6	99	83.721	ENSUAMG00000025152	SMG6	100	77.698	Ursus_americanus
ENSCAPG00000016197	SMG6	99	82.904	ENSUMAG00000009306	SMG6	100	77.794	Ursus_maritimus
ENSCAPG00000016197	SMG6	86	96.296	ENSVPAG00000000225	SMG6	85	96.296	Vicugna_pacos
ENSCAPG00000016197	SMG6	99	82.436	ENSVVUG00000021727	SMG6	98	77.361	Vulpes_vulpes
ENSCAPG00000016197	SMG6	99	57.757	ENSXETG00000023799	SMG6	91	58.010	Xenopus_tropicalis
ENSCAPG00000016197	SMG6	67	55.635	ENSXCOG00000009867	smg6	66	55.635	Xiphophorus_couchianus
ENSCAPG00000016197	SMG6	81	48.879	ENSXMAG00000010321	smg6	74	46.006	Xiphophorus_maculatus