EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000016268 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 2480 bases
Position: chrAVPZ01000223.1:18351403-18353882
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000016361	zf-C2H2	PF00096.26	8.7e-23	1	4
ENSCAPP00000016361	zf-C2H2	PF00096.26	8.7e-23	2	4
ENSCAPP00000016361	zf-C2H2	PF00096.26	8.7e-23	3	4
ENSCAPP00000016361	zf-C2H2	PF00096.26	8.7e-23	4	4
ENSCAPP00000016361	zf-met	PF12874.7	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000020152	-	345	-	ENSCAPP00000016361	114 (aa)	-	UPI00003681CA

Gene Model

Click here to download ENSCAPG00000016268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000016268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000016268	-	96	40.000	ENSCAPG00000005775	OVOL2	74	40.000
ENSCAPG00000016268	-	100	48.246	ENSCAPG00000017499	ZNF2	71	48.246
ENSCAPG00000016268	-	100	50.000	ENSCAPG00000016810	ZFP69	72	50.000
ENSCAPG00000016268	-	100	46.789	ENSCAPG00000015217	PRDM5	78	46.789
ENSCAPG00000016268	-	100	50.000	ENSCAPG00000013118	-	73	50.000
ENSCAPG00000016268	-	100	91.228	ENSCAPG00000010404	GFI1B	57	91.228
ENSCAPG00000016268	-	98	39.286	ENSCAPG00000009522	ZNF865	61	39.286
ENSCAPG00000016268	-	100	46.491	ENSCAPG00000006920	-	84	46.491
ENSCAPG00000016268	-	97	37.500	ENSCAPG00000013078	SNAI2	61	37.500
ENSCAPG00000016268	-	96	48.077	ENSCAPG00000000623	ZNF770	80	48.077
ENSCAPG00000016268	-	100	52.439	ENSCAPG00000002667	-	74	48.246
ENSCAPG00000016268	-	100	44.578	ENSCAPG00000007129	ZNF319	83	41.121
ENSCAPG00000016268	-	99	43.038	ENSCAPG00000012608	-	64	43.038
ENSCAPG00000016268	-	100	51.754	ENSCAPG00000003129	-	81	51.754

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000016268	-	100	100.000	ENSAMEG00000013858	-	92	100.000	Ailuropoda_melanoleuca
ENSCAPG00000016268	-	99	73.451	ENSACIG00000002180	-	99	73.451	Amphilophus_citrinellus
ENSCAPG00000016268	-	100	82.143	ENSACLG00000001258	-	91	82.143	Astatotilapia_calliptera
ENSCAPG00000016268	-	96	84.404	ENSAMXG00000015228	-	52	84.404	Astyanax_mexicanus
ENSCAPG00000016268	-	100	92.982	ENSAMXG00000006669	GFI1	54	92.982	Astyanax_mexicanus
ENSCAPG00000016268	-	100	100.000	ENSCPBG00000015742	-	84	100.000	Chrysemys_picta_bellii
ENSCAPG00000016268	-	98	81.416	ENSCING00000011342	-	88	81.416	Ciona_intestinalis
ENSCAPG00000016268	-	100	81.579	ENSCSAVG00000005904	-	70	81.579	Ciona_savignyi
ENSCAPG00000016268	-	100	100.000	ENSCGRG00000013485	-	84	100.000	Cricetulus_griseus_crigri
ENSCAPG00000016268	-	100	100.000	ENSDORG00000023443	-	84	100.000	Dipodomys_ordii
ENSCAPG00000016268	-	100	90.265	ENSEBUG00000008075	gfi1ab	57	90.265	Eptatretus_burgeri
ENSCAPG00000016268	-	100	100.000	ENSFDAG00000019296	-	84	100.000	Fukomys_damarensis
ENSCAPG00000016268	-	100	100.000	ENSGAGG00000015899	GFI1	84	100.000	Gopherus_agassizii
ENSCAPG00000016268	-	100	97.368	ENSHCOG00000019555	GFI1	52	97.368	Hippocampus_comes
ENSCAPG00000016268	-	96	83.486	ENSIPUG00000021407	-	52	83.486	Ictalurus_punctatus
ENSCAPG00000016268	-	100	100.000	ENSJJAG00000022622	-	100	100.000	Jaculus_jaculus
ENSCAPG00000016268	-	96	92.661	ENSLACG00000017590	-	51	92.661	Latimeria_chalumnae
ENSCAPG00000016268	-	100	100.000	ENSMMUG00000005068	GFI1	84	100.000	Macaca_mulatta
ENSCAPG00000016268	-	100	100.000	ENSMAUG00000021273	-	84	100.000	Mesocricetus_auratus
ENSCAPG00000016268	-	100	100.000	ENSMOCG00000004478	-	84	100.000	Microtus_ochrogaster
ENSCAPG00000016268	-	100	100.000	MGP_CAROLIEiJ_G0027508	Gfi1	84	100.000	Mus_caroli
ENSCAPG00000016268	-	100	100.000	MGP_PahariEiJ_G0017280	Gfi1	84	100.000	Mus_pahari
ENSCAPG00000016268	-	100	100.000	ENSNGAG00000002549	-	84	100.000	Nannospalax_galili
ENSCAPG00000016268	-	100	82.569	ENSNBRG00000010351	-	88	82.569	Neolamprologus_brichardi
ENSCAPG00000016268	-	95	80.556	ENSNBRG00000001834	-	94	80.556	Neolamprologus_brichardi
ENSCAPG00000016268	-	100	100.000	ENSODEG00000006410	-	84	100.000	Octodon_degus
ENSCAPG00000016268	-	100	99.123	ENSOANG00000022289	-	77	99.123	Ornithorhynchus_anatinus
ENSCAPG00000016268	-	100	97.368	ENSORLG00020002817	GFI1	52	97.368	Oryzias_latipes_hni
ENSCAPG00000016268	-	100	100.000	ENSPTIG00000002680	-	84	100.000	Panthera_tigris_altaica
ENSCAPG00000016268	-	97	96.396	ENSPMGG00000011041	GFI1	53	96.396	Periophthalmus_magnuspinnatus
ENSCAPG00000016268	-	100	98.246	ENSPLAG00000010879	gfi1ab	52	98.246	Poecilia_latipinna
ENSCAPG00000016268	-	98	82.143	ENSPNYG00000001775	-	88	82.143	Pundamilia_nyererei
ENSCAPG00000016268	-	96	83.486	ENSPNAG00000014299	-	54	83.486	Pygocentrus_nattereri
ENSCAPG00000016268	-	93	89.655	ENSSFOG00015008114	-	52	83.929	Scleropages_formosus
ENSCAPG00000016268	-	96	81.651	ENSSLDG00000017614	-	84	81.651	Seriola_lalandi_dorsalis
ENSCAPG00000016268	-	100	98.246	ENSSPAG00000009140	gfi1ab	54	98.246	Stegastes_partitus
ENSCAPG00000016268	-	100	100.000	ENSUMAG00000011251	-	84	100.000	Ursus_maritimus
ENSCAPG00000016268	-	100	92.857	ENSXCOG00000009186	-	90	92.857	Xiphophorus_couchianus
ENSCAPG00000016268	-	95	80.556	ENSXMAG00000006527	-	50	80.556	Xiphophorus_maculatus