EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000016658 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 103484 bases
Position: chrAVPZ01000078.1:11492801-11596284
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000016852	MIF4G	PF02854.19	2e-61	1	2
ENSCAPP00000016852	MIF4G	PF02854.19	2e-61	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000020653	UPF2-201	3429	-	ENSCAPP00000016852	1142 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000016658's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000016658's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000016658	UPF2	100	86.204	ENSG00000151461	UPF2	91	87.188	Homo_sapiens
ENSCAPG00000016658	UPF2	95	70.873	ENSAPOG00000015837	UPF2	91	70.884	Acanthochromis_polyacanthus
ENSCAPG00000016658	UPF2	94	87.144	ENSAMEG00000004586	UPF2	91	87.608	Ailuropoda_melanoleuca
ENSCAPG00000016658	UPF2	95	74.744	ENSACIG00000018078	UPF2	91	75.086	Amphilophus_citrinellus
ENSCAPG00000016658	UPF2	95	74.403	ENSAOCG00000016766	UPF2	91	74.850	Amphiprion_ocellaris
ENSCAPG00000016658	UPF2	95	74.488	ENSAPEG00000019084	UPF2	91	74.936	Amphiprion_percula
ENSCAPG00000016658	UPF2	95	74.361	ENSATEG00000021677	UPF2	91	74.552	Anabas_testudineus
ENSCAPG00000016658	UPF2	99	74.488	ENSAPLG00000010287	UPF2	90	80.244	Anas_platyrhynchos
ENSCAPG00000016658	UPF2	94	83.089	ENSACAG00000009259	UPF2	91	83.534	Anolis_carolinensis
ENSCAPG00000016658	UPF2	95	81.469	ENSANAG00000028451	UPF2	93	81.485	Aotus_nancymaae
ENSCAPG00000016658	UPF2	95	74.744	ENSACLG00000012696	UPF2	91	75.086	Astatotilapia_calliptera
ENSCAPG00000016658	UPF2	95	75.386	ENSAMXG00000013700	UPF2	90	74.722	Astyanax_mexicanus
ENSCAPG00000016658	UPF2	95	86.968	ENSBTAG00000000288	UPF2	91	87.411	Bos_taurus
ENSCAPG00000016658	UPF2	100	87.010	ENSCJAG00000020685	UPF2	92	87.188	Callithrix_jacchus
ENSCAPG00000016658	UPF2	94	87.058	ENSCAFG00000004839	UPF2	91	87.522	Canis_familiaris
ENSCAPG00000016658	UPF2	94	84.469	ENSCAFG00020005882	UPF2	87	89.823	Canis_lupus_dingo
ENSCAPG00000016658	UPF2	95	86.919	ENSCHIG00000020359	UPF2	91	87.349	Capra_hircus
ENSCAPG00000016658	UPF2	100	85.866	ENSTSYG00000000935	UPF2	91	86.833	Carlito_syrichta
ENSCAPG00000016658	UPF2	95	89.853	ENSCPOG00000008809	UPF2	92	90.286	Cavia_porcellus
ENSCAPG00000016658	UPF2	100	84.033	ENSCCAG00000035991	UPF2	91	84.229	Cebus_capucinus
ENSCAPG00000016658	UPF2	100	86.367	ENSCATG00000032679	UPF2	91	87.360	Cercocebus_atys
ENSCAPG00000016658	UPF2	95	87.608	ENSCLAG00000011434	UPF2	91	88.038	Chinchilla_lanigera
ENSCAPG00000016658	UPF2	100	86.367	ENSCSAG00000013372	UPF2	91	87.360	Chlorocebus_sabaeus
ENSCAPG00000016658	UPF2	83	86.196	ENSCHOG00000000422	UPF2	83	86.239	Choloepus_hoffmanni
ENSCAPG00000016658	UPF2	100	82.829	ENSCPBG00000027823	UPF2	93	84.165	Chrysemys_picta_bellii
ENSCAPG00000016658	UPF2	80	44.687	ENSCSAVG00000007772	-	79	45.641	Ciona_savignyi
ENSCAPG00000016658	UPF2	100	83.635	ENSCANG00000040396	UPF2	91	85.153	Colobus_angolensis_palliatus
ENSCAPG00000016658	UPF2	94	86.281	ENSCGRG00001019347	Upf2	91	86.231	Cricetulus_griseus_chok1gshd
ENSCAPG00000016658	UPF2	94	86.281	ENSCGRG00000017993	Upf2	91	86.231	Cricetulus_griseus_crigri
ENSCAPG00000016658	UPF2	94	71.993	ENSCSEG00000003520	UPF2	71	77.427	Cynoglossus_semilaevis
ENSCAPG00000016658	UPF2	95	74.172	ENSCVAG00000006167	UPF2	94	76.740	Cyprinodon_variegatus
ENSCAPG00000016658	UPF2	95	86.747	ENSDNOG00000018160	UPF2	91	87.177	Dasypus_novemcinctus
ENSCAPG00000016658	UPF2	95	86.231	ENSDORG00000002478	Upf2	91	86.145	Dipodomys_ordii
ENSCAPG00000016658	UPF2	94	37.228	FBgn0029992	Upf2	73	36.501	Drosophila_melanogaster
ENSCAPG00000016658	UPF2	69	100.000	ENSETEG00000011583	-	61	100.000	Echinops_telfairi
ENSCAPG00000016658	UPF2	61	61.646	ENSEBUG00000012448	-	80	61.957	Eptatretus_burgeri
ENSCAPG00000016658	UPF2	95	86.919	ENSEASG00005019274	UPF2	91	89.187	Equus_asinus_asinus
ENSCAPG00000016658	UPF2	95	86.919	ENSECAG00000017022	UPF2	91	87.349	Equus_caballus
ENSCAPG00000016658	UPF2	70	98.718	ENSEEUG00000007819	UPF2	68	98.728	Erinaceus_europaeus
ENSCAPG00000016658	UPF2	96	73.537	ENSELUG00000012014	UPF2	91	74.446	Esox_lucius
ENSCAPG00000016658	UPF2	94	90.000	ENSFCAG00000005785	UPF2	91	87.435	Felis_catus
ENSCAPG00000016658	UPF2	94	83.435	ENSFALG00000001889	UPF2	89	83.649	Ficedula_albicollis
ENSCAPG00000016658	UPF2	95	87.177	ENSFDAG00000014348	UPF2	91	87.091	Fukomys_damarensis
ENSCAPG00000016658	UPF2	95	74.235	ENSFHEG00000009826	UPF2	92	74.251	Fundulus_heteroclitus
ENSCAPG00000016658	UPF2	94	72.318	ENSGMOG00000005557	UPF2	91	73.110	Gadus_morhua
ENSCAPG00000016658	UPF2	94	83.534	ENSGALG00000033772	UPF2	91	83.835	Gallus_gallus
ENSCAPG00000016658	UPF2	95	73.909	ENSGAFG00000020867	UPF2	91	73.995	Gambusia_affinis
ENSCAPG00000016658	UPF2	94	74.116	ENSGACG00000001080	UPF2	91	74.508	Gasterosteus_aculeatus
ENSCAPG00000016658	UPF2	94	83.506	ENSGAGG00000002700	UPF2	91	83.821	Gopherus_agassizii
ENSCAPG00000016658	UPF2	100	86.204	ENSGGOG00000001479	UPF2	91	87.188	Gorilla_gorilla
ENSCAPG00000016658	UPF2	95	74.659	ENSHBUG00000004249	UPF2	91	75.086	Haplochromis_burtoni
ENSCAPG00000016658	UPF2	95	87.608	ENSHGLG00000015176	-	91	88.038	Heterocephalus_glaber_female
ENSCAPG00000016658	UPF2	95	80.140	ENSHGLG00000003822	-	91	79.790	Heterocephalus_glaber_female
ENSCAPG00000016658	UPF2	95	84.220	ENSHGLG00100010036	UPF2	91	84.079	Heterocephalus_glaber_male
ENSCAPG00000016658	UPF2	95	73.532	ENSHCOG00000004025	UPF2	91	73.396	Hippocampus_comes
ENSCAPG00000016658	UPF2	95	73.356	ENSIPUG00000015524	UPF2	91	74.144	Ictalurus_punctatus
ENSCAPG00000016658	UPF2	95	86.489	ENSSTOG00000013075	UPF2	91	86.403	Ictidomys_tridecemlineatus
ENSCAPG00000016658	UPF2	95	85.198	ENSJJAG00000004913	Upf2	91	84.768	Jaculus_jaculus
ENSCAPG00000016658	UPF2	95	74.084	ENSKMAG00000001071	UPF2	92	74.466	Kryptolebias_marmoratus
ENSCAPG00000016658	UPF2	94	74.914	ENSLBEG00000016394	-	91	75.064	Labrus_bergylta
ENSCAPG00000016658	UPF2	75	77.187	ENSLBEG00000000728	-	93	75.480	Labrus_bergylta
ENSCAPG00000016658	UPF2	94	71.429	ENSLACG00000015945	UPF2	92	71.563	Latimeria_chalumnae
ENSCAPG00000016658	UPF2	94	77.414	ENSLOCG00000015698	UPF2	92	77.331	Lepisosteus_oculatus
ENSCAPG00000016658	UPF2	100	86.367	ENSMFAG00000043865	UPF2	91	87.360	Macaca_fascicularis
ENSCAPG00000016658	UPF2	100	86.367	ENSMMUG00000008241	UPF2	91	87.360	Macaca_mulatta
ENSCAPG00000016658	UPF2	82	88.061	ENSMNEG00000008062	UPF2	89	89.716	Macaca_nemestrina
ENSCAPG00000016658	UPF2	100	83.063	ENSMLEG00000036120	UPF2	92	84.609	Mandrillus_leucophaeus
ENSCAPG00000016658	UPF2	95	74.702	ENSMAMG00000018276	UPF2	91	74.381	Mastacembelus_armatus
ENSCAPG00000016658	UPF2	95	74.659	ENSMZEG00005021595	UPF2	91	75.086	Maylandia_zebra
ENSCAPG00000016658	UPF2	94	83.003	ENSMGAG00000004573	UPF2	91	83.305	Meleagris_gallopavo
ENSCAPG00000016658	UPF2	94	85.689	ENSMAUG00000016512	Upf2	91	85.201	Mesocricetus_auratus
ENSCAPG00000016658	UPF2	80	88.290	ENSMICG00000001716	UPF2	75	89.480	Microcebus_murinus
ENSCAPG00000016658	UPF2	95	85.800	ENSMOCG00000008263	Upf2	91	85.714	Microtus_ochrogaster
ENSCAPG00000016658	UPF2	93	72.561	ENSMMOG00000006528	UPF2	74	77.802	Mola_mola
ENSCAPG00000016658	UPF2	95	85.357	ENSMODG00000016794	UPF2	91	85.800	Monodelphis_domestica
ENSCAPG00000016658	UPF2	95	73.504	ENSMALG00000002663	UPF2	91	73.928	Monopterus_albus
ENSCAPG00000016658	UPF2	100	85.866	MGP_CAROLIEiJ_G0023157	Upf2	99	85.739	Mus_caroli
ENSCAPG00000016658	UPF2	100	85.784	ENSMUSG00000043241	Upf2	99	81.801	Mus_musculus
ENSCAPG00000016658	UPF2	95	85.616	MGP_PahariEiJ_G0019217	Upf2	99	81.609	Mus_pahari
ENSCAPG00000016658	UPF2	100	86.029	MGP_SPRETEiJ_G0024075	Upf2	99	81.801	Mus_spretus
ENSCAPG00000016658	UPF2	94	87.058	ENSMPUG00000001064	UPF2	91	87.522	Mustela_putorius_furo
ENSCAPG00000016658	UPF2	95	86.535	ENSMLUG00000000228	UPF2	92	86.964	Myotis_lucifugus
ENSCAPG00000016658	UPF2	95	74.659	ENSNBRG00000013629	UPF2	91	75.086	Neolamprologus_brichardi
ENSCAPG00000016658	UPF2	100	86.204	ENSNLEG00000012058	UPF2	91	87.188	Nomascus_leucogenys
ENSCAPG00000016658	UPF2	75	89.956	ENSOPRG00000006801	-	73	91.048	Ochotona_princeps
ENSCAPG00000016658	UPF2	95	87.608	ENSODEG00000001290	UPF2	91	88.038	Octodon_degus
ENSCAPG00000016658	UPF2	95	74.829	ENSONIG00000017991	UPF2	91	75.171	Oreochromis_niloticus
ENSCAPG00000016658	UPF2	95	86.484	ENSOCUG00000006230	UPF2	92	86.912	Oryctolagus_cuniculus
ENSCAPG00000016658	UPF2	95	73.339	ENSORLG00000017189	UPF2	91	73.612	Oryzias_latipes
ENSCAPG00000016658	UPF2	95	73.339	ENSORLG00020005969	UPF2	91	73.612	Oryzias_latipes_hni
ENSCAPG00000016658	UPF2	95	73.339	ENSORLG00015005713	UPF2	91	73.527	Oryzias_latipes_hsok
ENSCAPG00000016658	UPF2	95	70.493	ENSOMEG00000023420	UPF2	89	70.513	Oryzias_melastigma
ENSCAPG00000016658	UPF2	95	86.736	ENSOGAG00000005796	UPF2	91	87.177	Otolemur_garnettii
ENSCAPG00000016658	UPF2	95	86.770	ENSOARG00000014587	UPF2	91	87.199	Ovis_aries
ENSCAPG00000016658	UPF2	100	82.253	ENSPPAG00000037953	UPF2	91	83.749	Pan_paniscus
ENSCAPG00000016658	UPF2	94	87.058	ENSPPRG00000000690	UPF2	91	87.435	Panthera_pardus
ENSCAPG00000016658	UPF2	94	87.058	ENSPTIG00000008867	UPF2	91	87.435	Panthera_tigris_altaica
ENSCAPG00000016658	UPF2	100	86.204	ENSPTRG00000002291	UPF2	91	87.188	Pan_troglodytes
ENSCAPG00000016658	UPF2	100	86.286	ENSPANG00000023399	UPF2	91	87.274	Papio_anubis
ENSCAPG00000016658	UPF2	94	74.138	ENSPKIG00000025502	UPF2	91	74.508	Paramormyrops_kingsleyae
ENSCAPG00000016658	UPF2	53	85.070	ENSPSIG00000015158	UPF2	82	85.604	Pelodiscus_sinensis
ENSCAPG00000016658	UPF2	95	72.051	ENSPMGG00000005259	UPF2	92	72.899	Periophthalmus_magnuspinnatus
ENSCAPG00000016658	UPF2	87	97.881	ENSPEMG00000015731	Upf2	90	97.881	Peromyscus_maniculatus_bairdii
ENSCAPG00000016658	UPF2	94	85.516	ENSPCIG00000006656	UPF2	91	85.948	Phascolarctos_cinereus
ENSCAPG00000016658	UPF2	95	74.274	ENSPFOG00000017118	UPF2	91	74.166	Poecilia_formosa
ENSCAPG00000016658	UPF2	95	74.274	ENSPLAG00000005094	UPF2	91	74.166	Poecilia_latipinna
ENSCAPG00000016658	UPF2	95	74.274	ENSPMEG00000017009	UPF2	91	74.166	Poecilia_mexicana
ENSCAPG00000016658	UPF2	95	73.608	ENSPREG00000021880	UPF2	91	74.572	Poecilia_reticulata
ENSCAPG00000016658	UPF2	66	82.374	ENSPPYG00000002089	-	99	82.974	Pongo_abelii
ENSCAPG00000016658	UPF2	83	84.167	ENSPCAG00000000684	UPF2	80	84.954	Procavia_capensis
ENSCAPG00000016658	UPF2	95	83.219	ENSPCOG00000021656	UPF2	91	83.391	Propithecus_coquereli
ENSCAPG00000016658	UPF2	95	81.255	ENSPVAG00000017286	UPF2	91	81.255	Pteropus_vampyrus
ENSCAPG00000016658	UPF2	95	72.014	ENSPNYG00000017096	UPF2	91	72.432	Pundamilia_nyererei
ENSCAPG00000016658	UPF2	95	74.743	ENSPNAG00000009357	UPF2	91	74.508	Pygocentrus_nattereri
ENSCAPG00000016658	UPF2	95	81.475	ENSRNOG00000023593	Upf2	95	87.067	Rattus_norvegicus
ENSCAPG00000016658	UPF2	100	84.791	ENSRBIG00000037780	UPF2	91	85.246	Rhinopithecus_bieti
ENSCAPG00000016658	UPF2	100	85.796	ENSRROG00000043547	UPF2	91	86.242	Rhinopithecus_roxellana
ENSCAPG00000016658	UPF2	100	86.356	ENSSBOG00000020012	UPF2	91	86.071	Saimiri_boliviensis_boliviensis
ENSCAPG00000016658	UPF2	94	74.785	ENSSFOG00015023788	upf2	92	74.893	Scleropages_formosus
ENSCAPG00000016658	UPF2	93	71.639	ENSSMAG00000007637	UPF2	91	72.464	Scophthalmus_maximus
ENSCAPG00000016658	UPF2	95	74.317	ENSSDUG00000017244	UPF2	91	74.765	Seriola_dumerili
ENSCAPG00000016658	UPF2	95	72.712	ENSSLDG00000016866	UPF2	73	79.249	Seriola_lalandi_dorsalis
ENSCAPG00000016658	UPF2	95	84.648	ENSSARG00000008615	UPF2	91	85.112	Sorex_araneus
ENSCAPG00000016658	UPF2	94	80.311	ENSSPUG00000014544	UPF2	90	80.120	Sphenodon_punctatus
ENSCAPG00000016658	UPF2	69	82.814	ENSSSCG00000011117	-	99	83.391	Sus_scrofa
ENSCAPG00000016658	UPF2	94	83.333	ENSTGUG00000002163	-	92	83.549	Taeniopygia_guttata
ENSCAPG00000016658	UPF2	95	74.131	ENSTRUG00000007519	UPF2	91	74.552	Takifugu_rubripes
ENSCAPG00000016658	UPF2	99	71.510	ENSTNIG00000004453	UPF2	94	73.657	Tetraodon_nigroviridis
ENSCAPG00000016658	UPF2	89	81.006	ENSTBEG00000012679	UPF2	84	80.912	Tupaia_belangeri
ENSCAPG00000016658	UPF2	95	86.747	ENSTTRG00000016388	UPF2	91	87.177	Tursiops_truncatus
ENSCAPG00000016658	UPF2	94	81.656	ENSUAMG00000023560	UPF2	91	82.416	Ursus_americanus
ENSCAPG00000016658	UPF2	94	87.230	ENSUMAG00000012953	UPF2	87	87.694	Ursus_maritimus
ENSCAPG00000016658	UPF2	81	96.774	ENSVPAG00000006763	UPF2	77	96.774	Vicugna_pacos
ENSCAPG00000016658	UPF2	94	87.058	ENSVVUG00000006166	UPF2	90	89.479	Vulpes_vulpes
ENSCAPG00000016658	UPF2	94	77.749	ENSXETG00000033103	UPF2	91	77.816	Xenopus_tropicalis
ENSCAPG00000016658	UPF2	95	73.932	ENSXCOG00000011604	UPF2	91	74.166	Xiphophorus_couchianus
ENSCAPG00000016658	UPF2	95	74.188	ENSXMAG00000017209	UPF2	91	74.080	Xiphophorus_maculatus