EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000017088 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 29630 bases
Position: chrAVPZ01000023.1:862218-891847
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000017419	TruB_N	PF01509.18	9.9e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000021225	TRUB1-201	708	-	ENSCAPP00000017419	235 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000017088's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000017088's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000017088	TRUB1	100	83.858	ENSG00000165832	TRUB1	72	83.858	Homo_sapiens
ENSCAPG00000017088	TRUB1	82	61.792	ENSAPOG00000020565	trub1	77	61.792	Acanthochromis_polyacanthus
ENSCAPG00000017088	TRUB1	99	83.922	ENSAMEG00000014931	TRUB1	72	83.922	Ailuropoda_melanoleuca
ENSCAPG00000017088	TRUB1	82	56.132	ENSACIG00000003060	trub1	68	61.111	Amphilophus_citrinellus
ENSCAPG00000017088	TRUB1	82	61.792	ENSAOCG00000017188	trub1	77	61.792	Amphiprion_ocellaris
ENSCAPG00000017088	TRUB1	82	61.321	ENSAPEG00000015209	trub1	77	61.321	Amphiprion_percula
ENSCAPG00000017088	TRUB1	80	62.019	ENSATEG00000023291	trub1	75	62.019	Anabas_testudineus
ENSCAPG00000017088	TRUB1	89	67.249	ENSAPLG00000006808	TRUB1	82	67.249	Anas_platyrhynchos
ENSCAPG00000017088	TRUB1	92	60.593	ENSACAG00000009282	TRUB1	85	60.593	Anolis_carolinensis
ENSCAPG00000017088	TRUB1	100	84.646	ENSANAG00000022870	TRUB1	72	84.646	Aotus_nancymaae
ENSCAPG00000017088	TRUB1	85	60.550	ENSACLG00000000823	trub1	78	60.550	Astatotilapia_calliptera
ENSCAPG00000017088	TRUB1	89	59.912	ENSAMXG00000015845	trub1	76	59.912	Astyanax_mexicanus
ENSCAPG00000017088	TRUB1	99	84.190	ENSBTAG00000012955	TRUB1	72	84.190	Bos_taurus
ENSCAPG00000017088	TRUB1	100	85.039	ENSCJAG00000047815	TRUB1	72	85.039	Callithrix_jacchus
ENSCAPG00000017088	TRUB1	99	85.771	ENSCAFG00000011688	TRUB1	72	85.771	Canis_familiaris
ENSCAPG00000017088	TRUB1	99	85.771	ENSCAFG00020013237	TRUB1	72	85.771	Canis_lupus_dingo
ENSCAPG00000017088	TRUB1	99	84.585	ENSCHIG00000020884	TRUB1	76	84.585	Capra_hircus
ENSCAPG00000017088	TRUB1	100	84.252	ENSTSYG00000000446	TRUB1	72	84.252	Carlito_syrichta
ENSCAPG00000017088	TRUB1	63	100.000	ENSCPOG00000040236	-	61	100.000	Cavia_porcellus
ENSCAPG00000017088	TRUB1	71	89.286	ENSCPOG00000030129	-	65	89.286	Cavia_porcellus
ENSCAPG00000017088	TRUB1	100	84.646	ENSCCAG00000028842	TRUB1	72	84.646	Cebus_capucinus
ENSCAPG00000017088	TRUB1	100	84.646	ENSCATG00000033431	TRUB1	73	84.646	Cercocebus_atys
ENSCAPG00000017088	TRUB1	63	95.973	ENSCLAG00000008664	TRUB1	61	95.973	Chinchilla_lanigera
ENSCAPG00000017088	TRUB1	100	85.039	ENSCSAG00000004891	TRUB1	73	85.039	Chlorocebus_sabaeus
ENSCAPG00000017088	TRUB1	98	66.800	ENSCHOG00000011931	TRUB1	71	66.800	Choloepus_hoffmanni
ENSCAPG00000017088	TRUB1	89	70.175	ENSCPBG00000003051	TRUB1	79	70.175	Chrysemys_picta_bellii
ENSCAPG00000017088	TRUB1	100	85.039	ENSCANG00000029445	TRUB1	73	85.039	Colobus_angolensis_palliatus
ENSCAPG00000017088	TRUB1	99	77.470	ENSCGRG00001016772	-	84	77.470	Cricetulus_griseus_chok1gshd
ENSCAPG00000017088	TRUB1	99	69.565	ENSCGRG00001010322	-	68	69.565	Cricetulus_griseus_chok1gshd
ENSCAPG00000017088	TRUB1	99	77.470	ENSCGRG00000010806	Trub1	77	77.470	Cricetulus_griseus_crigri
ENSCAPG00000017088	TRUB1	82	57.346	ENSCSEG00000011261	trub1	83	51.562	Cynoglossus_semilaevis
ENSCAPG00000017088	TRUB1	84	60.185	ENSCVAG00000008791	trub1	69	58.667	Cyprinodon_variegatus
ENSCAPG00000017088	TRUB1	93	58.228	ENSDARG00000053805	trub1	79	58.228	Danio_rerio
ENSCAPG00000017088	TRUB1	99	80.237	ENSDNOG00000001069	TRUB1	72	80.237	Dasypus_novemcinctus
ENSCAPG00000017088	TRUB1	99	84.190	ENSDORG00000010431	Trub1	73	84.190	Dipodomys_ordii
ENSCAPG00000017088	TRUB1	79	86.408	ENSETEG00000009183	TRUB1	52	86.408	Echinops_telfairi
ENSCAPG00000017088	TRUB1	99	84.190	ENSEASG00005014739	TRUB1	72	84.190	Equus_asinus_asinus
ENSCAPG00000017088	TRUB1	99	84.190	ENSECAG00000007177	TRUB1	72	84.190	Equus_caballus
ENSCAPG00000017088	TRUB1	100	70.866	ENSEEUG00000013993	TRUB1	71	70.866	Erinaceus_europaeus
ENSCAPG00000017088	TRUB1	82	61.611	ENSELUG00000000502	trub1	74	61.611	Esox_lucius
ENSCAPG00000017088	TRUB1	99	84.127	ENSFCAG00000031927	TRUB1	72	84.127	Felis_catus
ENSCAPG00000017088	TRUB1	89	68.722	ENSFALG00000002232	TRUB1	88	68.722	Ficedula_albicollis
ENSCAPG00000017088	TRUB1	63	95.302	ENSFDAG00000008140	TRUB1	61	95.302	Fukomys_damarensis
ENSCAPG00000017088	TRUB1	82	60.377	ENSFHEG00000004016	trub1	73	60.377	Fundulus_heteroclitus
ENSCAPG00000017088	TRUB1	89	66.667	ENSGALG00000009091	TRUB1	97	63.208	Gallus_gallus
ENSCAPG00000017088	TRUB1	79	57.767	ENSGAFG00000009193	trub1	72	57.767	Gambusia_affinis
ENSCAPG00000017088	TRUB1	77	58.794	ENSGACG00000015387	trub1	96	59.487	Gasterosteus_aculeatus
ENSCAPG00000017088	TRUB1	89	71.053	ENSGAGG00000009758	TRUB1	65	71.053	Gopherus_agassizii
ENSCAPG00000017088	TRUB1	100	84.646	ENSGGOG00000004583	TRUB1	72	84.646	Gorilla_gorilla
ENSCAPG00000017088	TRUB1	85	60.550	ENSHBUG00000016787	trub1	78	60.550	Haplochromis_burtoni
ENSCAPG00000017088	TRUB1	99	84.190	ENSHGLG00000015314	TRUB1	72	84.190	Heterocephalus_glaber_female
ENSCAPG00000017088	TRUB1	63	95.973	ENSHGLG00100009183	TRUB1	63	95.973	Heterocephalus_glaber_male
ENSCAPG00000017088	TRUB1	82	60.190	ENSHCOG00000017877	trub1	76	60.190	Hippocampus_comes
ENSCAPG00000017088	TRUB1	91	60.776	ENSIPUG00000017559	trub1	82	60.776	Ictalurus_punctatus
ENSCAPG00000017088	TRUB1	99	83.004	ENSSTOG00000003641	TRUB1	76	83.004	Ictidomys_tridecemlineatus
ENSCAPG00000017088	TRUB1	99	80.237	ENSJJAG00000011800	Trub1	74	80.237	Jaculus_jaculus
ENSCAPG00000017088	TRUB1	85	59.193	ENSKMAG00000006232	trub1	80	59.193	Kryptolebias_marmoratus
ENSCAPG00000017088	TRUB1	91	56.466	ENSLBEG00000026722	trub1	80	56.466	Labrus_bergylta
ENSCAPG00000017088	TRUB1	88	66.667	ENSLACG00000014885	TRUB1	75	66.667	Latimeria_chalumnae
ENSCAPG00000017088	TRUB1	85	66.055	ENSLOCG00000012979	trub1	74	66.055	Lepisosteus_oculatus
ENSCAPG00000017088	TRUB1	100	72.797	ENSLAFG00000015452	TRUB1	75	73.946	Loxodonta_africana
ENSCAPG00000017088	TRUB1	100	84.646	ENSMFAG00000031767	TRUB1	73	84.646	Macaca_fascicularis
ENSCAPG00000017088	TRUB1	100	85.039	ENSMMUG00000001902	TRUB1	73	85.039	Macaca_mulatta
ENSCAPG00000017088	TRUB1	100	79.528	ENSMNEG00000044646	TRUB1	72	79.528	Macaca_nemestrina
ENSCAPG00000017088	TRUB1	100	85.039	ENSMLEG00000042655	TRUB1	73	85.039	Mandrillus_leucophaeus
ENSCAPG00000017088	TRUB1	85	60.550	ENSMZEG00005024095	trub1	78	60.550	Maylandia_zebra
ENSCAPG00000017088	TRUB1	89	65.502	ENSMGAG00000011135	TRUB1	79	65.502	Meleagris_gallopavo
ENSCAPG00000017088	TRUB1	99	74.308	ENSMAUG00000011101	Trub1	74	74.308	Mesocricetus_auratus
ENSCAPG00000017088	TRUB1	99	84.585	ENSMICG00000016324	TRUB1	72	84.585	Microcebus_murinus
ENSCAPG00000017088	TRUB1	99	75.889	ENSMOCG00000017759	Trub1	76	75.889	Microtus_ochrogaster
ENSCAPG00000017088	TRUB1	99	70.751	ENSMODG00000009676	TRUB1	70	70.751	Monodelphis_domestica
ENSCAPG00000017088	TRUB1	99	76.680	MGP_CAROLIEiJ_G0023100	Trub1	66	87.654	Mus_caroli
ENSCAPG00000017088	TRUB1	99	75.494	ENSMUSG00000025086	Trub1	66	87.037	Mus_musculus
ENSCAPG00000017088	TRUB1	99	76.680	MGP_PahariEiJ_G0014588	Trub1	75	76.680	Mus_pahari
ENSCAPG00000017088	TRUB1	99	76.285	MGP_SPRETEiJ_G0024021	Trub1	66	87.654	Mus_spretus
ENSCAPG00000017088	TRUB1	99	85.771	ENSMPUG00000003556	TRUB1	72	85.771	Mustela_putorius_furo
ENSCAPG00000017088	TRUB1	100	82.283	ENSMLUG00000017686	TRUB1	75	82.283	Myotis_lucifugus
ENSCAPG00000017088	TRUB1	99	81.028	ENSNGAG00000018682	Trub1	73	81.028	Nannospalax_galili
ENSCAPG00000017088	TRUB1	82	61.792	ENSNBRG00000023393	trub1	76	61.792	Neolamprologus_brichardi
ENSCAPG00000017088	TRUB1	100	84.252	ENSNLEG00000016345	TRUB1	72	84.252	Nomascus_leucogenys
ENSCAPG00000017088	TRUB1	63	85.906	ENSMEUG00000006603	TRUB1	55	85.906	Notamacropus_eugenii
ENSCAPG00000017088	TRUB1	99	75.494	ENSOPRG00000009371	TRUB1	74	75.494	Ochotona_princeps
ENSCAPG00000017088	TRUB1	99	83.004	ENSODEG00000010854	TRUB1	72	83.004	Octodon_degus
ENSCAPG00000017088	TRUB1	82	61.321	ENSONIG00000007249	trub1	77	61.321	Oreochromis_niloticus
ENSCAPG00000017088	TRUB1	93	70.042	ENSOANG00000001556	TRUB1	78	70.042	Ornithorhynchus_anatinus
ENSCAPG00000017088	TRUB1	99	77.866	ENSOCUG00000009456	TRUB1	73	77.866	Oryctolagus_cuniculus
ENSCAPG00000017088	TRUB1	80	61.538	ENSORLG00000029719	trub1	75	61.538	Oryzias_latipes
ENSCAPG00000017088	TRUB1	80	61.058	ENSORLG00020016767	trub1	73	61.058	Oryzias_latipes_hni
ENSCAPG00000017088	TRUB1	80	61.538	ENSORLG00015014728	trub1	75	61.538	Oryzias_latipes_hsok
ENSCAPG00000017088	TRUB1	80	62.019	ENSOMEG00000014556	trub1	73	62.019	Oryzias_melastigma
ENSCAPG00000017088	TRUB1	99	86.166	ENSOGAG00000015895	TRUB1	72	86.166	Otolemur_garnettii
ENSCAPG00000017088	TRUB1	99	83.922	ENSOARG00000015591	TRUB1	72	83.922	Ovis_aries
ENSCAPG00000017088	TRUB1	100	84.646	ENSPPAG00000043645	TRUB1	72	84.646	Pan_paniscus
ENSCAPG00000017088	TRUB1	99	84.127	ENSPPRG00000007096	TRUB1	72	84.127	Panthera_pardus
ENSCAPG00000017088	TRUB1	99	84.524	ENSPTIG00000006378	TRUB1	72	84.524	Panthera_tigris_altaica
ENSCAPG00000017088	TRUB1	100	84.646	ENSPTRG00000002964	TRUB1	72	84.646	Pan_troglodytes
ENSCAPG00000017088	TRUB1	100	85.039	ENSPANG00000020712	TRUB1	73	85.039	Papio_anubis
ENSCAPG00000017088	TRUB1	63	59.880	ENSPKIG00000003852	trub1	72	59.880	Paramormyrops_kingsleyae
ENSCAPG00000017088	TRUB1	89	69.298	ENSPSIG00000012877	TRUB1	79	69.298	Pelodiscus_sinensis
ENSCAPG00000017088	TRUB1	82	58.768	ENSPMGG00000000075	trub1	76	58.768	Periophthalmus_magnuspinnatus
ENSCAPG00000017088	TRUB1	99	74.308	ENSPEMG00000011156	Trub1	74	74.308	Peromyscus_maniculatus_bairdii
ENSCAPG00000017088	TRUB1	100	75.319	ENSPCIG00000009729	TRUB1	67	75.641	Phascolarctos_cinereus
ENSCAPG00000017088	TRUB1	82	59.242	ENSPFOG00000009950	trub1	77	59.242	Poecilia_formosa
ENSCAPG00000017088	TRUB1	82	59.242	ENSPLAG00000013855	trub1	74	59.242	Poecilia_latipinna
ENSCAPG00000017088	TRUB1	82	59.242	ENSPMEG00000009064	trub1	76	59.242	Poecilia_mexicana
ENSCAPG00000017088	TRUB1	82	60.190	ENSPREG00000003343	trub1	76	60.190	Poecilia_reticulata
ENSCAPG00000017088	TRUB1	100	84.646	ENSPPYG00000002676	TRUB1	72	84.646	Pongo_abelii
ENSCAPG00000017088	TRUB1	100	74.803	ENSPCAG00000008427	TRUB1	72	74.803	Procavia_capensis
ENSCAPG00000017088	TRUB1	99	78.261	ENSPCOG00000024360	TRUB1	71	78.261	Propithecus_coquereli
ENSCAPG00000017088	TRUB1	63	94.631	ENSPVAG00000007575	TRUB1	57	94.631	Pteropus_vampyrus
ENSCAPG00000017088	TRUB1	85	60.550	ENSPNYG00000018614	trub1	78	60.550	Pundamilia_nyererei
ENSCAPG00000017088	TRUB1	79	56.808	ENSPNAG00000006881	trub1	79	56.808	Pygocentrus_nattereri
ENSCAPG00000017088	TRUB1	99	75.494	ENSRNOG00000017321	Trub1	74	75.494	Rattus_norvegicus
ENSCAPG00000017088	TRUB1	100	75.304	ENSRBIG00000033423	TRUB1	70	75.304	Rhinopithecus_bieti
ENSCAPG00000017088	TRUB1	100	85.039	ENSRROG00000033902	TRUB1	73	85.039	Rhinopithecus_roxellana
ENSCAPG00000017088	TRUB1	100	84.646	ENSSBOG00000024237	TRUB1	72	84.646	Saimiri_boliviensis_boliviensis
ENSCAPG00000017088	TRUB1	99	70.196	ENSSHAG00000009346	TRUB1	85	70.196	Sarcophilus_harrisii
ENSCAPG00000017088	TRUB1	91	56.432	ENSSFOG00015022124	trub1	82	56.432	Scleropages_formosus
ENSCAPG00000017088	TRUB1	82	61.321	ENSSMAG00000001020	trub1	75	61.321	Scophthalmus_maximus
ENSCAPG00000017088	TRUB1	82	61.792	ENSSDUG00000016414	trub1	76	61.792	Seriola_dumerili
ENSCAPG00000017088	TRUB1	90	59.130	ENSSLDG00000015486	trub1	82	59.130	Seriola_lalandi_dorsalis
ENSCAPG00000017088	TRUB1	93	68.776	ENSSPUG00000001642	TRUB1	81	68.776	Sphenodon_punctatus
ENSCAPG00000017088	TRUB1	89	60.088	ENSSPAG00000001217	trub1	81	60.088	Stegastes_partitus
ENSCAPG00000017088	TRUB1	99	81.423	ENSSSCG00000010653	TRUB1	72	81.423	Sus_scrofa
ENSCAPG00000017088	TRUB1	89	68.722	ENSTGUG00000010971	TRUB1	81	68.722	Taeniopygia_guttata
ENSCAPG00000017088	TRUB1	99	68.775	ENSTBEG00000002880	TRUB1	99	68.775	Tupaia_belangeri
ENSCAPG00000017088	TRUB1	63	93.960	ENSTTRG00000005767	TRUB1	57	93.960	Tursiops_truncatus
ENSCAPG00000017088	TRUB1	99	86.166	ENSUAMG00000024876	TRUB1	72	86.166	Ursus_americanus
ENSCAPG00000017088	TRUB1	99	85.771	ENSUMAG00000002411	TRUB1	75	85.771	Ursus_maritimus
ENSCAPG00000017088	TRUB1	99	83.399	ENSVPAG00000005507	TRUB1	72	83.399	Vicugna_pacos
ENSCAPG00000017088	TRUB1	99	85.771	ENSVVUG00000010085	TRUB1	61	85.771	Vulpes_vulpes
ENSCAPG00000017088	TRUB1	88	62.222	ENSXETG00000023828	trub1	82	62.222	Xenopus_tropicalis
ENSCAPG00000017088	TRUB1	79	58.537	ENSXCOG00000017847	trub1	72	58.537	Xiphophorus_couchianus
ENSCAPG00000017088	TRUB1	82	57.820	ENSXMAG00000014701	trub1	76	57.820	Xiphophorus_maculatus