EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000017234 (Gene tree)
Gene ID: -
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 25260 bases
Position: chrAVPZ01000167.1:2462672-2487931
Accession: 30859
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000017658	ResIII	PF04851.15	7.2e-26	1	2
ENSCAPP00000017658	ResIII	PF04851.15	7.2e-26	2	2
ENSCAPP00000017658	DEAD	PF00270.29	1.4e-52	1	2
ENSCAPP00000017658	DEAD	PF00270.29	1.4e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000021465	SNRNP200-201	6390	-	ENSCAPP00000017658	2129 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000017234's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000017234's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000017234	SNRNP200	86	43.689	ENSCAPG00000010888	ASCC3	80	47.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000017234	SNRNP200	99	99.436	ENSG00000144028	SNRNP200	99	99.830	Homo_sapiens
ENSCAPG00000017234	SNRNP200	99	90.425	ENSAPOG00000010223	snrnp200	99	90.315	Acanthochromis_polyacanthus
ENSCAPG00000017234	SNRNP200	99	99.389	ENSAMEG00000008996	SNRNP200	99	99.389	Ailuropoda_melanoleuca
ENSCAPG00000017234	SNRNP200	98	89.856	ENSACIG00000001764	snrnp200	98	89.856	Amphilophus_citrinellus
ENSCAPG00000017234	SNRNP200	99	90.330	ENSAOCG00000024593	snrnp200	100	89.642	Amphiprion_ocellaris
ENSCAPG00000017234	SNRNP200	98	89.696	ENSAPEG00000012554	snrnp200	100	89.696	Amphiprion_percula
ENSCAPG00000017234	SNRNP200	99	90.189	ENSATEG00000022522	snrnp200	99	90.080	Anabas_testudineus
ENSCAPG00000017234	SNRNP200	99	97.366	ENSAPLG00000004313	SNRNP200	100	97.366	Anas_platyrhynchos
ENSCAPG00000017234	SNRNP200	99	96.899	ENSACAG00000000434	SNRNP200	99	96.899	Anolis_carolinensis
ENSCAPG00000017234	SNRNP200	99	95.211	ENSANAG00000036625	SNRNP200	99	95.634	Aotus_nancymaae
ENSCAPG00000017234	SNRNP200	99	90.047	ENSACLG00000011188	snrnp200	99	89.939	Astatotilapia_calliptera
ENSCAPG00000017234	SNRNP200	99	90.142	ENSAMXG00000005684	snrnp200	99	90.033	Astyanax_mexicanus
ENSCAPG00000017234	SNRNP200	99	98.919	ENSBTAG00000000848	SNRNP200	99	98.919	Bos_taurus
ENSCAPG00000017234	SNRNP200	99	99.389	ENSCJAG00000007514	SNRNP200	99	99.389	Callithrix_jacchus
ENSCAPG00000017234	SNRNP200	99	98.594	ENSCAFG00020019979	SNRNP200	100	99.418	Canis_lupus_dingo
ENSCAPG00000017234	SNRNP200	99	99.107	ENSCHIG00000020611	SNRNP200	99	99.107	Capra_hircus
ENSCAPG00000017234	SNRNP200	99	99.436	ENSTSYG00000010467	SNRNP200	99	99.436	Carlito_syrichta
ENSCAPG00000017234	SNRNP200	99	99.718	ENSCPOG00000006776	SNRNP200	99	99.718	Cavia_porcellus
ENSCAPG00000017234	SNRNP200	99	99.389	ENSCCAG00000033962	SNRNP200	99	99.389	Cebus_capucinus
ENSCAPG00000017234	SNRNP200	99	99.436	ENSCATG00000015790	SNRNP200	99	99.436	Cercocebus_atys
ENSCAPG00000017234	SNRNP200	99	99.577	ENSCLAG00000004116	SNRNP200	99	99.577	Chinchilla_lanigera
ENSCAPG00000017234	SNRNP200	99	99.389	ENSCSAG00000017369	SNRNP200	99	99.389	Chlorocebus_sabaeus
ENSCAPG00000017234	SNRNP200	74	99.115	ENSCHOG00000012981	-	58	99.115	Choloepus_hoffmanni
ENSCAPG00000017234	SNRNP200	99	97.508	ENSCPBG00000022571	SNRNP200	99	97.872	Chrysemys_picta_bellii
ENSCAPG00000017234	SNRNP200	99	76.173	ENSCING00000005082	-	99	76.313	Ciona_intestinalis
ENSCAPG00000017234	SNRNP200	95	99.404	ENSCANG00000033932	SNRNP200	100	99.404	Colobus_angolensis_palliatus
ENSCAPG00000017234	SNRNP200	99	99.389	ENSCGRG00001022610	Snrnp200	99	99.389	Cricetulus_griseus_chok1gshd
ENSCAPG00000017234	SNRNP200	99	98.826	ENSCGRG00000016472	Snrnp200	99	98.826	Cricetulus_griseus_crigri
ENSCAPG00000017234	SNRNP200	99	89.516	ENSCSEG00000016399	snrnp200	99	89.516	Cynoglossus_semilaevis
ENSCAPG00000017234	SNRNP200	99	85.190	ENSCVAG00000017631	snrnp200	99	85.190	Cyprinodon_variegatus
ENSCAPG00000017234	SNRNP200	99	89.892	ENSDARG00000077536	snrnp200	99	89.892	Danio_rerio
ENSCAPG00000017234	SNRNP200	99	97.884	ENSDNOG00000011227	SNRNP200	99	97.884	Dasypus_novemcinctus
ENSCAPG00000017234	SNRNP200	99	96.944	ENSDORG00000005861	Snrnp200	99	96.944	Dipodomys_ordii
ENSCAPG00000017234	SNRNP200	99	74.007	FBgn0263599	l(3)72Ab	99	73.913	Drosophila_melanogaster
ENSCAPG00000017234	SNRNP200	95	99.215	ENSETEG00000000162	SNRNP200	74	99.215	Echinops_telfairi
ENSCAPG00000017234	SNRNP200	84	80.893	ENSEBUG00000016524	snrnp200	95	80.893	Eptatretus_burgeri
ENSCAPG00000017234	SNRNP200	99	98.361	ENSEASG00005001884	SNRNP200	99	98.361	Equus_asinus_asinus
ENSCAPG00000017234	SNRNP200	99	99.483	ENSECAG00000019675	SNRNP200	99	99.483	Equus_caballus
ENSCAPG00000017234	SNRNP200	87	97.733	ENSEEUG00000012178	SNRNP200	91	97.733	Erinaceus_europaeus
ENSCAPG00000017234	SNRNP200	99	90.377	ENSELUG00000018948	snrnp200	99	90.268	Esox_lucius
ENSCAPG00000017234	SNRNP200	99	99.436	ENSFCAG00000010699	SNRNP200	99	99.436	Felis_catus
ENSCAPG00000017234	SNRNP200	94	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSCAPG00000017234	SNRNP200	99	99.530	ENSFDAG00000004683	SNRNP200	99	99.530	Fukomys_damarensis
ENSCAPG00000017234	SNRNP200	99	87.400	ENSFHEG00000003786	snrnp200	99	87.400	Fundulus_heteroclitus
ENSCAPG00000017234	SNRNP200	99	89.301	ENSGMOG00000004881	snrnp200	99	89.254	Gadus_morhua
ENSCAPG00000017234	SNRNP200	99	87.635	ENSGAFG00000010807	snrnp200	99	87.635	Gambusia_affinis
ENSCAPG00000017234	SNRNP200	99	89.540	ENSGACG00000011474	snrnp200	99	89.447	Gasterosteus_aculeatus
ENSCAPG00000017234	SNRNP200	95	97.791	ENSGAGG00000016069	SNRNP200	98	97.231	Gopherus_agassizii
ENSCAPG00000017234	SNRNP200	99	99.436	ENSGGOG00000005174	SNRNP200	99	99.436	Gorilla_gorilla
ENSCAPG00000017234	SNRNP200	98	87.387	ENSHBUG00000011322	snrnp200	99	87.433	Haplochromis_burtoni
ENSCAPG00000017234	SNRNP200	99	99.624	ENSHGLG00000006654	SNRNP200	99	99.624	Heterocephalus_glaber_female
ENSCAPG00000017234	SNRNP200	99	99.624	ENSHGLG00100018594	SNRNP200	99	99.624	Heterocephalus_glaber_male
ENSCAPG00000017234	SNRNP200	99	99.389	ENSSTOG00000016351	SNRNP200	99	99.389	Ictidomys_tridecemlineatus
ENSCAPG00000017234	SNRNP200	99	99.248	ENSJJAG00000023659	Snrnp200	99	99.248	Jaculus_jaculus
ENSCAPG00000017234	SNRNP200	99	87.067	ENSKMAG00000003665	snrnp200	99	87.067	Kryptolebias_marmoratus
ENSCAPG00000017234	SNRNP200	99	89.798	ENSLBEG00000021585	snrnp200	99	89.798	Labrus_bergylta
ENSCAPG00000017234	SNRNP200	82	94.336	ENSLACG00000000226	SNRNP200	99	94.336	Latimeria_chalumnae
ENSCAPG00000017234	SNRNP200	99	91.725	ENSLOCG00000015198	snrnp200	99	91.725	Lepisosteus_oculatus
ENSCAPG00000017234	SNRNP200	99	99.201	ENSLAFG00000015626	SNRNP200	99	99.201	Loxodonta_africana
ENSCAPG00000017234	SNRNP200	99	99.389	ENSMFAG00000040174	SNRNP200	99	99.389	Macaca_fascicularis
ENSCAPG00000017234	SNRNP200	99	99.389	ENSMMUG00000023261	SNRNP200	99	99.389	Macaca_mulatta
ENSCAPG00000017234	SNRNP200	99	99.342	ENSMNEG00000032398	SNRNP200	99	99.342	Macaca_nemestrina
ENSCAPG00000017234	SNRNP200	99	99.436	ENSMLEG00000019083	SNRNP200	99	99.436	Mandrillus_leucophaeus
ENSCAPG00000017234	SNRNP200	99	89.756	ENSMAMG00000007851	snrnp200	99	89.709	Mastacembelus_armatus
ENSCAPG00000017234	SNRNP200	98	87.387	ENSMZEG00005010787	snrnp200	99	87.433	Maylandia_zebra
ENSCAPG00000017234	SNRNP200	97	96.911	ENSMGAG00000001831	SNRNP200	100	96.911	Meleagris_gallopavo
ENSCAPG00000017234	SNRNP200	99	99.342	ENSMAUG00000011825	Snrnp200	99	99.342	Mesocricetus_auratus
ENSCAPG00000017234	SNRNP200	99	99.389	ENSMICG00000004710	SNRNP200	99	99.389	Microcebus_murinus
ENSCAPG00000017234	SNRNP200	99	96.756	ENSMOCG00000011814	Snrnp200	99	96.756	Microtus_ochrogaster
ENSCAPG00000017234	SNRNP200	99	88.538	ENSMMOG00000014167	snrnp200	99	88.434	Mola_mola
ENSCAPG00000017234	SNRNP200	99	98.543	ENSMODG00000008475	SNRNP200	99	98.543	Monodelphis_domestica
ENSCAPG00000017234	SNRNP200	99	90.330	ENSMALG00000001973	snrnp200	99	90.221	Monopterus_albus
ENSCAPG00000017234	SNRNP200	99	99.248	MGP_CAROLIEiJ_G0024250	Snrnp200	99	99.248	Mus_caroli
ENSCAPG00000017234	SNRNP200	99	99.295	ENSMUSG00000003660	Snrnp200	99	99.295	Mus_musculus
ENSCAPG00000017234	SNRNP200	99	99.342	MGP_PahariEiJ_G0025695	Snrnp200	99	99.342	Mus_pahari
ENSCAPG00000017234	SNRNP200	99	99.295	MGP_SPRETEiJ_G0025170	Snrnp200	99	99.724	Mus_spretus
ENSCAPG00000017234	SNRNP200	99	99.342	ENSMPUG00000008949	SNRNP200	99	99.342	Mustela_putorius_furo
ENSCAPG00000017234	SNRNP200	99	98.685	ENSMLUG00000010493	SNRNP200	99	98.685	Myotis_lucifugus
ENSCAPG00000017234	SNRNP200	99	95.016	ENSMLUG00000027511	-	99	95.016	Myotis_lucifugus
ENSCAPG00000017234	SNRNP200	99	99.436	ENSNGAG00000021993	Snrnp200	99	99.436	Nannospalax_galili
ENSCAPG00000017234	SNRNP200	91	89.884	ENSNBRG00000017960	snrnp200	98	89.936	Neolamprologus_brichardi
ENSCAPG00000017234	SNRNP200	99	94.771	ENSNLEG00000000025	SNRNP200	99	94.771	Nomascus_leucogenys
ENSCAPG00000017234	SNRNP200	99	100.000	ENSMEUG00000010532	SNRNP200	78	100.000	Notamacropus_eugenii
ENSCAPG00000017234	SNRNP200	97	98.069	ENSOPRG00000015464	SNRNP200	97	98.069	Ochotona_princeps
ENSCAPG00000017234	SNRNP200	99	99.577	ENSODEG00000008366	SNRNP200	99	99.577	Octodon_degus
ENSCAPG00000017234	SNRNP200	99	90.047	ENSONIG00000010714	snrnp200	99	89.939	Oreochromis_niloticus
ENSCAPG00000017234	SNRNP200	99	99.295	ENSOCUG00000009864	SNRNP200	99	99.295	Oryctolagus_cuniculus
ENSCAPG00000017234	SNRNP200	99	89.845	ENSORLG00000012286	snrnp200	100	89.845	Oryzias_latipes
ENSCAPG00000017234	SNRNP200	99	89.892	ENSORLG00020004648	snrnp200	99	89.892	Oryzias_latipes_hni
ENSCAPG00000017234	SNRNP200	99	89.845	ENSORLG00015019114	snrnp200	100	89.954	Oryzias_latipes_hsok
ENSCAPG00000017234	SNRNP200	99	90.094	ENSOMEG00000011834	snrnp200	99	89.986	Oryzias_melastigma
ENSCAPG00000017234	SNRNP200	99	99.436	ENSOGAG00000006879	SNRNP200	99	99.436	Otolemur_garnettii
ENSCAPG00000017234	SNRNP200	99	98.119	ENSOARG00000013949	SNRNP200	99	98.119	Ovis_aries
ENSCAPG00000017234	SNRNP200	99	99.436	ENSPPAG00000041559	SNRNP200	99	99.436	Pan_paniscus
ENSCAPG00000017234	SNRNP200	99	99.436	ENSPPRG00000004435	SNRNP200	99	99.436	Panthera_pardus
ENSCAPG00000017234	SNRNP200	99	98.966	ENSPTIG00000006380	SNRNP200	99	98.966	Panthera_tigris_altaica
ENSCAPG00000017234	SNRNP200	99	99.436	ENSPTRG00000012230	SNRNP200	99	99.436	Pan_troglodytes
ENSCAPG00000017234	SNRNP200	99	99.389	ENSPANG00000006017	SNRNP200	99	99.389	Papio_anubis
ENSCAPG00000017234	SNRNP200	99	90.644	ENSPKIG00000014762	snrnp200	99	90.644	Paramormyrops_kingsleyae
ENSCAPG00000017234	SNRNP200	99	96.241	ENSPSIG00000008580	SNRNP200	99	96.241	Pelodiscus_sinensis
ENSCAPG00000017234	SNRNP200	99	98.496	ENSPCIG00000023050	SNRNP200	99	98.496	Phascolarctos_cinereus
ENSCAPG00000017234	SNRNP200	99	89.944	ENSPFOG00000015110	snrnp200	99	89.944	Poecilia_formosa
ENSCAPG00000017234	SNRNP200	98	89.808	ENSPLAG00000006711	snrnp200	99	89.808	Poecilia_latipinna
ENSCAPG00000017234	SNRNP200	98	89.753	ENSPMEG00000021166	snrnp200	99	89.753	Poecilia_mexicana
ENSCAPG00000017234	SNRNP200	99	90.033	ENSPREG00000008875	snrnp200	99	90.033	Poecilia_reticulata
ENSCAPG00000017234	SNRNP200	99	99.436	ENSPPYG00000012068	SNRNP200	99	99.436	Pongo_abelii
ENSCAPG00000017234	SNRNP200	98	97.436	ENSPCAG00000008536	SNRNP200	89	97.436	Procavia_capensis
ENSCAPG00000017234	SNRNP200	99	99.436	ENSPCOG00000024608	SNRNP200	99	99.436	Propithecus_coquereli
ENSCAPG00000017234	SNRNP200	96	99.643	ENSPVAG00000005860	SNRNP200	92	99.643	Pteropus_vampyrus
ENSCAPG00000017234	SNRNP200	99	85.513	ENSPNYG00000017476	snrnp200	99	85.420	Pundamilia_nyererei
ENSCAPG00000017234	SNRNP200	99	85.614	ENSPNAG00000010998	snrnp200	99	85.614	Pygocentrus_nattereri
ENSCAPG00000017234	SNRNP200	99	99.342	ENSRNOG00000012157	Snrnp200	99	99.342	Rattus_norvegicus
ENSCAPG00000017234	SNRNP200	99	99.436	ENSRBIG00000044690	-	99	99.436	Rhinopithecus_bieti
ENSCAPG00000017234	SNRNP200	99	99.436	ENSRROG00000037952	-	99	99.436	Rhinopithecus_roxellana
ENSCAPG00000017234	SNRNP200	99	99.389	ENSSBOG00000035471	SNRNP200	99	99.389	Saimiri_boliviensis_boliviensis
ENSCAPG00000017234	SNRNP200	97	98.456	ENSSHAG00000000758	SNRNP200	100	98.456	Sarcophilus_harrisii
ENSCAPG00000017234	SNRNP200	99	91.226	ENSSFOG00015018826	snrnp200	99	91.114	Scleropages_formosus
ENSCAPG00000017234	SNRNP200	99	90.000	ENSSMAG00000005463	snrnp200	99	89.892	Scophthalmus_maximus
ENSCAPG00000017234	SNRNP200	99	90.283	ENSSDUG00000021410	snrnp200	99	90.174	Seriola_dumerili
ENSCAPG00000017234	SNRNP200	99	90.236	ENSSLDG00000010884	snrnp200	99	90.127	Seriola_lalandi_dorsalis
ENSCAPG00000017234	SNRNP200	95	98.607	ENSSARG00000010728	SNRNP200	95	98.607	Sorex_araneus
ENSCAPG00000017234	SNRNP200	99	97.038	ENSSPUG00000003726	-	99	97.038	Sphenodon_punctatus
ENSCAPG00000017234	SNRNP200	99	90.330	ENSSPAG00000001842	snrnp200	99	90.221	Stegastes_partitus
ENSCAPG00000017234	SNRNP200	99	99.248	ENSSSCG00000008127	SNRNP200	99	99.248	Sus_scrofa
ENSCAPG00000017234	SNRNP200	99	87.645	ENSTGUG00000014475	-	100	87.645	Taeniopygia_guttata
ENSCAPG00000017234	SNRNP200	99	89.953	ENSTRUG00000001307	snrnp200	99	89.845	Takifugu_rubripes
ENSCAPG00000017234	SNRNP200	99	85.233	ENSTNIG00000004320	snrnp200	99	85.233	Tetraodon_nigroviridis
ENSCAPG00000017234	SNRNP200	83	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
ENSCAPG00000017234	SNRNP200	99	99.060	ENSTTRG00000004983	SNRNP200	99	99.060	Tursiops_truncatus
ENSCAPG00000017234	SNRNP200	75	92.338	ENSUAMG00000008395	-	93	92.338	Ursus_americanus
ENSCAPG00000017234	SNRNP200	99	99.436	ENSUMAG00000012385	SNRNP200	99	99.436	Ursus_maritimus
ENSCAPG00000017234	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSCAPG00000017234	SNRNP200	99	99.577	ENSVVUG00000026247	SNRNP200	99	99.577	Vulpes_vulpes
ENSCAPG00000017234	SNRNP200	99	93.897	ENSXETG00000001243	snrnp200	99	93.897	Xenopus_tropicalis
ENSCAPG00000017234	SNRNP200	98	90.069	ENSXMAG00000002058	snrnp200	98	90.069	Xiphophorus_maculatus