EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCATG00000030539 (Gene tree)
Gene ID: 105594509
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cercocebus_atys
Status: putative
Strand: Minus strand
Length: 38081 bases
Position: chrKQ010552.1:673362-711442
Accession: 105594509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCATP00000012876	EST1	PF10374.9	1.2e-23	1	1
ENSCATP00000012862	EST1	PF10374.9	1.3e-23	1	1
ENSCATP00000012862	EST1_DNA_bind	PF10373.9	4.6e-40	1	2
ENSCATP00000012862	EST1_DNA_bind	PF10373.9	4.6e-40	2	2
ENSCATP00000012876	EST1_DNA_bind	PF10373.9	8.8e-39	1	1
ENSCATP00000012862	PIN_4	PF13638.6	3.2e-05	1	1
ENSCATP00000012876	PIN_4	PF13638.6	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCATT00000036995	SMG5-201	5577	XM_012078670	ENSCATP00000012862	1016 (aa)	XP_011934060	A0A2K5LIW6
ENSCATT00000037010	SMG5-202	3039	-	ENSCATP00000012876	1012 (aa)	-	A0A2K5LIX2

Gene Model

Click here to download ENSCATG00000030539's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCATG00000030539's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCATG00000030539	SMG5	100	99.311	ENSG00000198952	SMG5	100	99.311	Homo_sapiens
ENSCATG00000030539	SMG5	99	67.647	ENSAPOG00000019690	smg5	99	66.896	Acanthochromis_polyacanthus
ENSCATG00000030539	SMG5	98	92.649	ENSAMEG00000014458	SMG5	100	92.649	Ailuropoda_melanoleuca
ENSCATG00000030539	SMG5	99	65.038	ENSACIG00000001353	smg5	99	66.763	Amphilophus_citrinellus
ENSCATG00000030539	SMG5	98	64.828	ENSAOCG00000019483	smg5	93	66.701	Amphiprion_ocellaris
ENSCATG00000030539	SMG5	98	66.600	ENSAPEG00000022949	smg5	98	66.434	Amphiprion_percula
ENSCATG00000030539	SMG5	99	65.868	ENSATEG00000005348	smg5	99	67.313	Anabas_testudineus
ENSCATG00000030539	SMG5	98	78.927	ENSAPLG00000010263	SMG5	100	78.634	Anas_platyrhynchos
ENSCATG00000030539	SMG5	100	98.327	ENSANAG00000032899	SMG5	100	98.327	Aotus_nancymaae
ENSCATG00000030539	SMG5	99	64.683	ENSACLG00000009311	smg5	99	66.314	Astatotilapia_calliptera
ENSCATG00000030539	SMG5	100	96.161	ENSBTAG00000009435	SMG5	100	96.161	Bos_taurus
ENSCATG00000030539	SMG5	99	44.101	ENSBTAG00000021747	-	99	43.478	Bos_taurus
ENSCATG00000030539	SMG5	100	98.327	ENSCJAG00000005684	SMG5	100	98.327	Callithrix_jacchus
ENSCATG00000030539	SMG5	100	94.685	ENSCAFG00000016839	SMG5	100	93.898	Canis_familiaris
ENSCATG00000030539	SMG5	100	94.685	ENSCAFG00020006061	SMG5	100	93.898	Canis_lupus_dingo
ENSCATG00000030539	SMG5	100	96.063	ENSCHIG00000007709	SMG5	100	96.063	Capra_hircus
ENSCATG00000030539	SMG5	99	44.807	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSCATG00000030539	SMG5	100	97.247	ENSTSYG00000004099	SMG5	100	97.247	Carlito_syrichta
ENSCATG00000030539	SMG5	97	75.153	ENSCAPG00000003631	SMG5	100	75.597	Cavia_aperea
ENSCATG00000030539	SMG5	100	96.267	ENSCPOG00000015696	SMG5	100	96.267	Cavia_porcellus
ENSCATG00000030539	SMG5	100	98.327	ENSCCAG00000027409	SMG5	100	98.327	Cebus_capucinus
ENSCATG00000030539	SMG5	100	96.562	ENSCLAG00000003983	SMG5	100	96.562	Chinchilla_lanigera
ENSCATG00000030539	SMG5	100	99.902	ENSCSAG00000002120	SMG5	100	99.902	Chlorocebus_sabaeus
ENSCATG00000030539	SMG5	54	93.796	ENSCHOG00000008741	-	57	93.796	Choloepus_hoffmanni
ENSCATG00000030539	SMG5	94	78.702	ENSCPBG00000025848	SMG5	100	78.398	Chrysemys_picta_bellii
ENSCATG00000030539	SMG5	93	35.088	ENSCING00000008706	-	99	35.077	Ciona_intestinalis
ENSCATG00000030539	SMG5	100	95.571	ENSCANG00000029208	SMG5	100	95.571	Colobus_angolensis_palliatus
ENSCATG00000030539	SMG5	100	93.124	ENSCGRG00001006336	Smg5	100	92.731	Cricetulus_griseus_chok1gshd
ENSCATG00000030539	SMG5	98	93.159	ENSCGRG00000005111	Smg5	100	92.749	Cricetulus_griseus_crigri
ENSCATG00000030539	SMG5	99	65.500	ENSCSEG00000014220	smg5	92	78.014	Cynoglossus_semilaevis
ENSCATG00000030539	SMG5	99	61.014	ENSCVAG00000000529	smg5	99	61.710	Cyprinodon_variegatus
ENSCATG00000030539	SMG5	92	36.786	ENSDNOG00000039862	-	100	35.300	Dasypus_novemcinctus
ENSCATG00000030539	SMG5	100	91.831	ENSDNOG00000000051	SMG5	100	91.831	Dasypus_novemcinctus
ENSCATG00000030539	SMG5	100	93.910	ENSDORG00000010382	Smg5	100	93.713	Dipodomys_ordii
ENSCATG00000030539	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSCATG00000030539	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSCATG00000030539	SMG5	90	46.695	ENSEBUG00000003739	smg5	98	46.324	Eptatretus_burgeri
ENSCATG00000030539	SMG5	100	97.047	ENSEASG00005019122	SMG5	100	97.047	Equus_asinus_asinus
ENSCATG00000030539	SMG5	100	97.047	ENSECAG00000001389	SMG5	100	97.047	Equus_caballus
ENSCATG00000030539	SMG5	72	98.559	ENSEEUG00000012690	SMG5	73	98.559	Erinaceus_europaeus
ENSCATG00000030539	SMG5	99	65.159	ENSELUG00000012585	smg5	99	65.063	Esox_lucius
ENSCATG00000030539	SMG5	100	93.996	ENSFCAG00000011783	SMG5	100	93.314	Felis_catus
ENSCATG00000030539	SMG5	58	82.137	ENSFALG00000001166	-	99	82.245	Ficedula_albicollis
ENSCATG00000030539	SMG5	98	93.152	ENSFDAG00000017388	SMG5	100	93.051	Fukomys_damarensis
ENSCATG00000030539	SMG5	97	62.513	ENSFHEG00000013939	smg5	95	68.476	Fundulus_heteroclitus
ENSCATG00000030539	SMG5	99	61.370	ENSGMOG00000007310	smg5	92	76.606	Gadus_morhua
ENSCATG00000030539	SMG5	99	78.014	ENSGALG00000029918	-	100	77.714	Gallus_gallus
ENSCATG00000030539	SMG5	50	53.096	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSCATG00000030539	SMG5	100	79.487	ENSGAGG00000016131	SMG5	100	79.297	Gopherus_agassizii
ENSCATG00000030539	SMG5	100	99.311	ENSGGOG00000010932	SMG5	100	99.311	Gorilla_gorilla
ENSCATG00000030539	SMG5	99	64.211	ENSHBUG00000008654	smg5	99	65.366	Haplochromis_burtoni
ENSCATG00000030539	SMG5	100	93.026	ENSHGLG00000019152	SMG5	100	93.222	Heterocephalus_glaber_female
ENSCATG00000030539	SMG5	90	93.100	ENSHGLG00100015948	SMG5	99	93.319	Heterocephalus_glaber_male
ENSCATG00000030539	SMG5	86	73.594	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSCATG00000030539	SMG5	99	61.469	ENSIPUG00000006624	Smg5	99	62.078	Ictalurus_punctatus
ENSCATG00000030539	SMG5	100	96.657	ENSSTOG00000001780	SMG5	100	96.657	Ictidomys_tridecemlineatus
ENSCATG00000030539	SMG5	100	93.131	ENSJJAG00000022763	Smg5	100	92.934	Jaculus_jaculus
ENSCATG00000030539	SMG5	50	59.524	ENSKMAG00000014586	smg5	99	61.422	Kryptolebias_marmoratus
ENSCATG00000030539	SMG5	99	66.409	ENSLBEG00000002145	smg5	99	66.441	Labrus_bergylta
ENSCATG00000030539	SMG5	100	64.957	ENSLACG00000010521	SMG5	100	64.862	Latimeria_chalumnae
ENSCATG00000030539	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSCATG00000030539	SMG5	100	94.587	ENSLAFG00000006241	SMG5	100	94.587	Loxodonta_africana
ENSCATG00000030539	SMG5	100	99.902	ENSMFAG00000045357	SMG5	100	99.902	Macaca_fascicularis
ENSCATG00000030539	SMG5	100	99.803	ENSMMUG00000000090	SMG5	100	99.803	Macaca_mulatta
ENSCATG00000030539	SMG5	100	99.803	ENSMNEG00000044425	SMG5	100	99.803	Macaca_nemestrina
ENSCATG00000030539	SMG5	100	95.652	ENSMLEG00000041192	SMG5	100	95.652	Mandrillus_leucophaeus
ENSCATG00000030539	SMG5	99	61.106	ENSMAMG00000010683	smg5	58	56.585	Mastacembelus_armatus
ENSCATG00000030539	SMG5	99	63.740	ENSMZEG00005015815	smg5	99	64.695	Maylandia_zebra
ENSCATG00000030539	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	59.276	Maylandia_zebra
ENSCATG00000030539	SMG5	100	92.240	ENSMAUG00000010381	Smg5	100	92.043	Mesocricetus_auratus
ENSCATG00000030539	SMG5	55	45.184	ENSMAUG00000000043	-	96	44.444	Mesocricetus_auratus
ENSCATG00000030539	SMG5	100	97.441	ENSMICG00000002257	SMG5	100	97.441	Microcebus_murinus
ENSCATG00000030539	SMG5	100	91.863	ENSMOCG00000016590	Smg5	100	91.569	Microtus_ochrogaster
ENSCATG00000030539	SMG5	99	59.216	ENSMMOG00000017199	smg5	99	59.821	Mola_mola
ENSCATG00000030539	SMG5	97	34.990	ENSMODG00000004511	-	99	34.195	Monodelphis_domestica
ENSCATG00000030539	SMG5	78	37.783	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSCATG00000030539	SMG5	87	90.090	ENSMODG00000016901	SMG5	98	90.541	Monodelphis_domestica
ENSCATG00000030539	SMG5	80	38.407	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSCATG00000030539	SMG5	93	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSCATG00000030539	SMG5	99	60.800	ENSMALG00000010375	smg5	99	59.680	Monopterus_albus
ENSCATG00000030539	SMG5	100	92.731	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCATG00000030539	SMG5	100	92.927	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCATG00000030539	SMG5	100	92.542	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCATG00000030539	SMG5	100	92.731	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCATG00000030539	SMG5	94	92.947	ENSMPUG00000004546	SMG5	100	92.316	Mustela_putorius_furo
ENSCATG00000030539	SMG5	100	95.793	ENSMLUG00000008518	SMG5	100	95.793	Myotis_lucifugus
ENSCATG00000030539	SMG5	100	94.199	ENSNGAG00000020706	Smg5	100	93.904	Nannospalax_galili
ENSCATG00000030539	SMG5	98	44.478	ENSNGAG00000012101	-	98	44.687	Nannospalax_galili
ENSCATG00000030539	SMG5	97	63.163	ENSNBRG00000004332	smg5	98	64.293	Neolamprologus_brichardi
ENSCATG00000030539	SMG5	100	99.213	ENSNLEG00000012439	SMG5	100	99.213	Nomascus_leucogenys
ENSCATG00000030539	SMG5	100	88.102	ENSMEUG00000012834	SMG5	100	87.217	Notamacropus_eugenii
ENSCATG00000030539	SMG5	100	94.587	ENSOPRG00000009152	SMG5	100	94.587	Ochotona_princeps
ENSCATG00000030539	SMG5	100	95.768	ENSODEG00000012237	SMG5	100	95.768	Octodon_degus
ENSCATG00000030539	SMG5	50	59.598	ENSONIG00000008632	smg5	55	55.592	Oreochromis_niloticus
ENSCATG00000030539	SMG5	89	40.700	ENSOCUG00000023338	-	99	40.591	Oryctolagus_cuniculus
ENSCATG00000030539	SMG5	98	95.565	ENSOCUG00000012886	SMG5	100	95.565	Oryctolagus_cuniculus
ENSCATG00000030539	SMG5	99	64.522	ENSORLG00020013127	smg5	99	65.920	Oryzias_latipes_hni
ENSCATG00000030539	SMG5	99	64.237	ENSORLG00015019014	smg5	99	65.792	Oryzias_latipes_hsok
ENSCATG00000030539	SMG5	100	95.276	ENSOGAG00000004966	SMG5	100	95.276	Otolemur_garnettii
ENSCATG00000030539	SMG5	100	96.161	ENSOARG00000005778	SMG5	100	96.161	Ovis_aries
ENSCATG00000030539	SMG5	99	44.477	ENSOARG00000011963	-	99	43.567	Ovis_aries
ENSCATG00000030539	SMG5	100	99.016	ENSPPAG00000011996	SMG5	100	99.016	Pan_paniscus
ENSCATG00000030539	SMG5	98	93.851	ENSPPRG00000011901	SMG5	100	93.145	Panthera_pardus
ENSCATG00000030539	SMG5	99	85.672	ENSPTIG00000007892	SMG5	98	85.628	Panthera_tigris_altaica
ENSCATG00000030539	SMG5	100	99.213	ENSPTRG00000049282	-	100	99.213	Pan_troglodytes
ENSCATG00000030539	SMG5	100	99.213	ENSPTRG00000023925	SMG5	100	99.213	Pan_troglodytes
ENSCATG00000030539	SMG5	100	100.000	ENSPANG00000011201	SMG5	100	100.000	Papio_anubis
ENSCATG00000030539	SMG5	99	65.507	ENSPKIG00000009402	smg5	99	65.759	Paramormyrops_kingsleyae
ENSCATG00000030539	SMG5	98	80.834	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSCATG00000030539	SMG5	99	60.478	ENSPMGG00000010465	smg5	99	60.962	Periophthalmus_magnuspinnatus
ENSCATG00000030539	SMG5	100	93.418	ENSPEMG00000001819	Smg5	100	93.026	Peromyscus_maniculatus_bairdii
ENSCATG00000030539	SMG5	56	46.060	ENSPEMG00000010022	-	95	44.845	Peromyscus_maniculatus_bairdii
ENSCATG00000030539	SMG5	99	49.421	ENSPMAG00000000410	smg5	100	49.525	Petromyzon_marinus
ENSCATG00000030539	SMG5	100	89.587	ENSPCIG00000018938	SMG5	100	89.980	Phascolarctos_cinereus
ENSCATG00000030539	SMG5	50	60.221	ENSPFOG00000010191	smg5	99	62.177	Poecilia_formosa
ENSCATG00000030539	SMG5	50	60.297	ENSPLAG00000009332	smg5	99	61.998	Poecilia_latipinna
ENSCATG00000030539	SMG5	99	65.706	ENSPMEG00000014105	smg5	99	65.322	Poecilia_mexicana
ENSCATG00000030539	SMG5	50	60.409	ENSPREG00000017713	smg5	99	61.909	Poecilia_reticulata
ENSCATG00000030539	SMG5	100	99.508	ENSPPYG00000000723	SMG5	100	99.508	Pongo_abelii
ENSCATG00000030539	SMG5	75	97.790	ENSPCAG00000008412	SMG5	81	97.790	Procavia_capensis
ENSCATG00000030539	SMG5	100	97.539	ENSPCOG00000004741	SMG5	100	97.539	Propithecus_coquereli
ENSCATG00000030539	SMG5	100	86.122	ENSPVAG00000016748	SMG5	100	86.122	Pteropus_vampyrus
ENSCATG00000030539	SMG5	93	63.883	ENSPNYG00000013397	smg5	99	61.027	Pundamilia_nyererei
ENSCATG00000030539	SMG5	100	92.927	ENSRNOG00000019590	Smg5	100	92.534	Rattus_norvegicus
ENSCATG00000030539	SMG5	100	99.705	ENSRBIG00000027428	SMG5	100	99.705	Rhinopithecus_bieti
ENSCATG00000030539	SMG5	100	99.606	ENSRROG00000030035	SMG5	100	99.606	Rhinopithecus_roxellana
ENSCATG00000030539	SMG5	100	98.327	ENSSBOG00000033339	SMG5	100	98.327	Saimiri_boliviensis_boliviensis
ENSCATG00000030539	SMG5	99	34.294	ENSSHAG00000009572	-	80	42.998	Sarcophilus_harrisii
ENSCATG00000030539	SMG5	88	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSCATG00000030539	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSCATG00000030539	SMG5	98	89.189	ENSSHAG00000014163	SMG5	100	89.590	Sarcophilus_harrisii
ENSCATG00000030539	SMG5	99	66.245	ENSSFOG00015024175	smg5	99	66.504	Scleropages_formosus
ENSCATG00000030539	SMG5	99	60.816	ENSSMAG00000013059	smg5	99	62.511	Scophthalmus_maximus
ENSCATG00000030539	SMG5	50	60.326	ENSSDUG00000007122	smg5	92	77.103	Seriola_dumerili
ENSCATG00000030539	SMG5	99	60.386	ENSSLDG00000011418	smg5	92	77.830	Seriola_lalandi_dorsalis
ENSCATG00000030539	SMG5	90	81.134	ENSSARG00000012484	SMG5	100	81.134	Sorex_araneus
ENSCATG00000030539	SMG5	94	77.553	ENSSPUG00000002260	SMG5	100	76.263	Sphenodon_punctatus
ENSCATG00000030539	SMG5	92	75.926	ENSSPAG00000014266	smg5	99	65.448	Stegastes_partitus
ENSCATG00000030539	SMG5	100	97.146	ENSSSCG00000006490	-	100	97.146	Sus_scrofa
ENSCATG00000030539	SMG5	99	75.172	ENSSSCG00000039308	-	100	75.369	Sus_scrofa
ENSCATG00000030539	SMG5	99	80.613	ENSTGUG00000003748	-	100	80.371	Taeniopygia_guttata
ENSCATG00000030539	SMG5	99	63.775	ENSTRUG00000012580	smg5	99	64.575	Takifugu_rubripes
ENSCATG00000030539	SMG5	99	65.310	ENSTNIG00000010303	smg5	99	65.082	Tetraodon_nigroviridis
ENSCATG00000030539	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSCATG00000030539	SMG5	100	91.831	ENSTTRG00000001401	SMG5	100	91.831	Tursiops_truncatus
ENSCATG00000030539	SMG5	100	93.504	ENSUAMG00000013721	SMG5	100	92.913	Ursus_americanus
ENSCATG00000030539	SMG5	98	89.045	ENSUMAG00000018041	SMG5	97	88.442	Ursus_maritimus
ENSCATG00000030539	SMG5	98	86.983	ENSVPAG00000009446	SMG5	99	86.983	Vicugna_pacos
ENSCATG00000030539	SMG5	100	94.390	ENSVVUG00000005887	SMG5	100	93.799	Vulpes_vulpes
ENSCATG00000030539	SMG5	77	65.952	ENSXETG00000033791	SMG5	99	65.195	Xenopus_tropicalis
ENSCATG00000030539	SMG5	99	65.764	ENSXMAG00000013499	smg5	99	65.769	Xiphophorus_maculatus