EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCATG00000032035 (Gene tree)
Gene ID: 105576682
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Cercocebus_atys
Status: putative
Strand: Plus strand
Length: 74472 bases
Position: chrKQ012408.1:13560714-13635185
Accession: 105576682
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCATP00000016455	ResIII	PF04851.15	3.4e-07	1	1
ENSCATP00000016444	ResIII	PF04851.15	3.4e-07	1	1
ENSCATP00000016425	ResIII	PF04851.15	3.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCATT00000040615	CHD1-203	5076	XM_012040010	ENSCATP00000016455	1691 (aa)	XP_011895400	A0A2K5LU31
ENSCATT00000040586	CHD1-201	6717	XM_012040008	ENSCATP00000016425	1712 (aa)	XP_011895398	A0A2K5LU02
ENSCATT00000040605	CHD1-202	5091	-	ENSCATP00000016444	1696 (aa)	-	A0A2K5LU22

Gene Model

Click here to download ENSCATG00000032035's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCATG00000032035's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCATG00000032035	CHD1	96	57.119	ENSCATG00000031069	-	91	59.569
ENSCATG00000032035	CHD1	50	37.120	ENSCATG00000039248	CHD6	85	40.164

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCATG00000032035	CHD1	100	99.299	ENSG00000153922	CHD1	100	99.299	Homo_sapiens
ENSCATG00000032035	CHD1	68	82.627	ENSAPOG00000005764	chd1	97	82.971	Acanthochromis_polyacanthus
ENSCATG00000032035	CHD1	89	77.008	ENSAOCG00000023105	chd1	94	77.531	Amphiprion_ocellaris
ENSCATG00000032035	CHD1	89	78.198	ENSAPEG00000013544	chd1	94	78.721	Amphiprion_percula
ENSCATG00000032035	CHD1	72	82.319	ENSAMXG00000010843	chd1	91	83.502	Astyanax_mexicanus
ENSCATG00000032035	CHD1	100	99.942	ENSCSAG00000015339	CHD1	100	99.942	Chlorocebus_sabaeus
ENSCATG00000032035	CHD1	55	88.781	ENSCPBG00000015831	CHD1	99	84.470	Chrysemys_picta_bellii
ENSCATG00000032035	CHD1	100	97.839	ENSCANG00000036916	CHD1	100	97.839	Colobus_angolensis_palliatus
ENSCATG00000032035	CHD1	100	95.566	ENSCGRG00001023943	Chd1	100	95.624	Cricetulus_griseus_chok1gshd
ENSCATG00000032035	CHD1	100	95.566	ENSCGRG00000008652	Chd1	100	95.624	Cricetulus_griseus_crigri
ENSCATG00000032035	CHD1	89	75.637	ENSCSEG00000009553	chd1	95	76.362	Cynoglossus_semilaevis
ENSCATG00000032035	CHD1	92	89.263	ENSEASG00005016110	CHD1	99	97.711	Equus_asinus_asinus
ENSCATG00000032035	CHD1	90	77.907	ENSELUG00000017677	chd1	93	77.986	Esox_lucius
ENSCATG00000032035	CHD1	72	81.255	ENSFHEG00000021164	chd1	87	82.759	Fundulus_heteroclitus
ENSCATG00000032035	CHD1	97	77.297	ENSGMOG00000001537	chd1	96	67.242	Gadus_morhua
ENSCATG00000032035	CHD1	92	89.611	ENSGALG00000031327	-	96	89.802	Gallus_gallus
ENSCATG00000032035	CHD1	83	81.694	ENSGAFG00000019880	chd1	92	82.844	Gambusia_affinis
ENSCATG00000032035	CHD1	100	95.701	ENSGGOG00000011463	CHD1	99	95.760	Gorilla_gorilla
ENSCATG00000032035	CHD1	88	79.178	ENSHCOG00000014222	chd1	91	79.611	Hippocampus_comes
ENSCATG00000032035	CHD1	87	81.782	ENSIPUG00000001369	chd1	95	79.675	Ictalurus_punctatus
ENSCATG00000032035	CHD1	63	95.318	ENSLAFG00000023183	CHD1	99	94.977	Loxodonta_africana
ENSCATG00000032035	CHD1	100	99.883	ENSMFAG00000031226	CHD1	100	99.883	Macaca_fascicularis
ENSCATG00000032035	CHD1	83	99.648	ENSMMUG00000014090	CHD1	99	99.648	Macaca_mulatta
ENSCATG00000032035	CHD1	100	99.882	ENSMNEG00000045073	CHD1	100	99.825	Macaca_nemestrina
ENSCATG00000032035	CHD1	100	96.038	ENSMLEG00000041096	CHD1	99	96.452	Mandrillus_leucophaeus
ENSCATG00000032035	CHD1	73	80.403	ENSMZEG00005010957	chd1	94	80.287	Maylandia_zebra
ENSCATG00000032035	CHD1	100	92.999	ENSMOCG00000019121	Chd1	100	93.116	Microtus_ochrogaster
ENSCATG00000032035	CHD1	80	78.561	ENSMALG00000013317	chd1	95	77.974	Monopterus_albus
ENSCATG00000032035	CHD1	100	94.227	MGP_CAROLIEiJ_G0021099	Chd1	99	96.950	Mus_caroli
ENSCATG00000032035	CHD1	100	94.577	ENSMUSG00000023852	Chd1	99	97.135	Mus_musculus
ENSCATG00000032035	CHD1	100	93.761	MGP_PahariEiJ_G0023414	Chd1	99	97.138	Mus_pahari
ENSCATG00000032035	CHD1	90	76.010	ENSNBRG00000006860	chd1	91	77.807	Neolamprologus_brichardi
ENSCATG00000032035	CHD1	100	96.659	ENSNLEG00000014493	CHD1	99	96.659	Nomascus_leucogenys
ENSCATG00000032035	CHD1	100	92.633	ENSOANG00000004891	CHD1	100	94.312	Ornithorhynchus_anatinus
ENSCATG00000032035	CHD1	60	77.394	ENSORLG00015016725	chd1	93	77.332	Oryzias_latipes_hsok
ENSCATG00000032035	CHD1	100	97.769	ENSPPAG00000043367	CHD1	99	97.826	Pan_paniscus
ENSCATG00000032035	CHD1	100	99.241	ENSPTRG00000017103	CHD1	100	99.241	Pan_troglodytes
ENSCATG00000032035	CHD1	100	99.883	ENSPANG00000006387	CHD1	100	99.883	Papio_anubis
ENSCATG00000032035	CHD1	91	78.384	ENSPKIG00000024719	chd1	94	79.041	Paramormyrops_kingsleyae
ENSCATG00000032035	CHD1	74	81.315	ENSPMGG00000005785	chd1	93	81.395	Periophthalmus_magnuspinnatus
ENSCATG00000032035	CHD1	100	95.858	ENSPEMG00000015939	Chd1	100	95.858	Peromyscus_maniculatus_bairdii
ENSCATG00000032035	CHD1	50	77.844	ENSPLAG00000006473	-	85	77.962	Poecilia_latipinna
ENSCATG00000032035	CHD1	97	74.805	ENSPREG00000004209	chd1	97	74.714	Poecilia_reticulata
ENSCATG00000032035	CHD1	83	95.778	ENSRNOG00000014434	Chd1	99	95.848	Rattus_norvegicus
ENSCATG00000032035	CHD1	100	96.807	ENSRBIG00000044325	CHD1	100	96.848	Rhinopithecus_bieti
ENSCATG00000032035	CHD1	100	99.533	ENSRROG00000001726	CHD1	100	99.533	Rhinopithecus_roxellana
ENSCATG00000032035	CHD1	72	81.930	ENSSFOG00015007161	chd1	90	82.602	Scleropages_formosus
ENSCATG00000032035	CHD1	80	78.661	ENSSDUG00000018314	chd1	94	78.514	Seriola_dumerili
ENSCATG00000032035	CHD1	52	83.713	ENSSLDG00000017244	chd1	84	86.019	Seriola_lalandi_dorsalis
ENSCATG00000032035	CHD1	80	79.381	ENSSPAG00000007024	chd1	95	78.571	Stegastes_partitus
ENSCATG00000032035	CHD1	86	98.078	ENSSSCG00000014177	CHD1	100	97.973	Sus_scrofa
ENSCATG00000032035	CHD1	91	75.354	ENSTRUG00000010282	chd1	96	73.144	Takifugu_rubripes
ENSCATG00000032035	CHD1	72	77.451	ENSTNIG00000007101	chd1	95	78.240	Tetraodon_nigroviridis
ENSCATG00000032035	CHD1	97	72.716	ENSXCOG00000017184	chd1	97	72.495	Xiphophorus_couchianus
ENSCATG00000032035	CHD1	77	78.582	ENSXMAG00000014538	chd1	95	78.653	Xiphophorus_maculatus