EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCATG00000034411 (Gene tree)
Gene ID: 105588009
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Cercocebus_atys
Status: putative
Strand: Minus strand
Length: 24483 bases
Position: chrKQ009724.1:2563915-2588397
Accession: 105588009
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCATP00000021397	CSD	PF00313.22	6.8e-26	1	1
ENSCATP00000021395	CSD	PF00313.22	8e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCATT00000045599	YBX3-202	1840	XM_012064803	ENSCATP00000021397	304 (aa)	XP_011920193	A0A2K5M8B0
ENSCATT00000045597	YBX3-201	2047	XM_012064799	ENSCATP00000021395	373 (aa)	XP_011920189	A0A2K5M868

Gene Model

Click here to download ENSCATG00000034411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCATG00000034411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCATG00000034411	YBX3	78	42.509	ENSCATG00000033345	-	90	43.729

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCATG00000034411	YBX3	100	98.660	ENSG00000060138	YBX3	100	98.660	Homo_sapiens
ENSCATG00000034411	YBX3	96	85.196	ENSAMEG00000009393	YBX3	95	89.118	Ailuropoda_melanoleuca
ENSCATG00000034411	YBX3	76	64.336	ENSAPLG00000003147	YBX3	70	100.000	Anas_platyrhynchos
ENSCATG00000034411	YBX3	100	96.247	ENSANAG00000024492	-	100	97.785	Aotus_nancymaae
ENSCATG00000034411	YBX3	98	86.154	ENSANAG00000033366	-	93	86.154	Aotus_nancymaae
ENSCATG00000034411	YBX3	100	81.137	ENSBTAG00000009663	YBX3	100	76.227	Bos_taurus
ENSCATG00000034411	YBX3	100	95.174	ENSCJAG00000021660	-	100	95.174	Callithrix_jacchus
ENSCATG00000034411	YBX3	100	71.803	ENSCJAG00000033824	-	98	91.892	Callithrix_jacchus
ENSCATG00000034411	YBX3	77	92.361	ENSCAFG00000013401	YBX3	100	92.202	Canis_familiaris
ENSCATG00000034411	YBX3	100	87.200	ENSCAFG00020006412	YBX3	100	86.400	Canis_lupus_dingo
ENSCATG00000034411	YBX3	100	81.137	ENSCHIG00000010863	YBX3	100	79.467	Capra_hircus
ENSCATG00000034411	YBX3	100	74.013	ENSTSYG00000035821	-	97	78.571	Carlito_syrichta
ENSCATG00000034411	YBX3	77	94.077	ENSTSYG00000004204	-	88	94.077	Carlito_syrichta
ENSCATG00000034411	YBX3	77	86.063	ENSCAPG00000015039	YBX3	93	86.063	Cavia_aperea
ENSCATG00000034411	YBX3	79	87.031	ENSCPOG00000011329	YBX3	86	87.031	Cavia_porcellus
ENSCATG00000034411	YBX3	100	95.979	ENSCCAG00000016469	YBX3	100	95.979	Cebus_capucinus
ENSCATG00000034411	YBX3	77	86.411	ENSCLAG00000016030	YBX3	94	86.411	Chinchilla_lanigera
ENSCATG00000034411	YBX3	100	99.464	ENSCSAG00000008744	YBX3	100	99.464	Chlorocebus_sabaeus
ENSCATG00000034411	YBX3	94	82.759	ENSCHOG00000011988	YBX3	77	82.759	Choloepus_hoffmanni
ENSCATG00000034411	YBX3	78	79.038	ENSCPBG00000014147	YBX3	81	78.157	Chrysemys_picta_bellii
ENSCATG00000034411	YBX3	56	57.558	ENSCING00000010654	yb1/2/3	73	49.767	Ciona_intestinalis
ENSCATG00000034411	YBX3	84	98.413	ENSCANG00000036801	YBX3	100	98.413	Colobus_angolensis_palliatus
ENSCATG00000034411	YBX3	85	88.994	ENSCGRG00001016148	Ybx3	100	83.646	Cricetulus_griseus_chok1gshd
ENSCATG00000034411	YBX3	77	90.068	ENSCGRG00000004563	Ybx3	98	88.699	Cricetulus_griseus_crigri
ENSCATG00000034411	YBX3	90	80.588	ENSDORG00000009103	Ybx3	81	89.895	Dipodomys_ordii
ENSCATG00000034411	YBX3	76	84.561	ENSETEG00000002557	YBX3	99	83.803	Echinops_telfairi
ENSCATG00000034411	YBX3	100	85.255	ENSEASG00005014726	YBX3	100	84.718	Equus_asinus_asinus
ENSCATG00000034411	YBX3	100	88.204	ENSECAG00000013777	YBX3	100	88.472	Equus_caballus
ENSCATG00000034411	YBX3	76	91.549	ENSEEUG00000010415	YBX3	100	91.549	Erinaceus_europaeus
ENSCATG00000034411	YBX3	100	92.513	ENSFCAG00000027748	YBX3	100	93.770	Felis_catus
ENSCATG00000034411	YBX3	71	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSCATG00000034411	YBX3	77	84.669	ENSFDAG00000021192	YBX3	92	83.624	Fukomys_damarensis
ENSCATG00000034411	YBX3	100	69.381	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSCATG00000034411	YBX3	78	79.038	ENSGAGG00000017780	YBX3	77	82.960	Gopherus_agassizii
ENSCATG00000034411	YBX3	100	98.928	ENSGGOG00000001352	YBX3	100	98.928	Gorilla_gorilla
ENSCATG00000034411	YBX3	73	78.909	ENSHGLG00000015495	-	100	68.272	Heterocephalus_glaber_female
ENSCATG00000034411	YBX3	80	74.587	ENSHGLG00000014798	-	86	75.758	Heterocephalus_glaber_female
ENSCATG00000034411	YBX3	72	87.615	ENSHGLG00100003589	YBX3	87	87.615	Heterocephalus_glaber_male
ENSCATG00000034411	YBX3	93	84.393	ENSSTOG00000032577	-	100	82.574	Ictidomys_tridecemlineatus
ENSCATG00000034411	YBX3	77	86.063	ENSSTOG00000002108	-	88	82.131	Ictidomys_tridecemlineatus
ENSCATG00000034411	YBX3	79	68.350	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSCATG00000034411	YBX3	100	90.617	ENSLAFG00000017247	YBX3	100	90.885	Loxodonta_africana
ENSCATG00000034411	YBX3	100	99.196	ENSMFAG00000039369	YBX3	100	99.196	Macaca_fascicularis
ENSCATG00000034411	YBX3	87	99.385	ENSMMUG00000022469	YBX3	100	99.385	Macaca_mulatta
ENSCATG00000034411	YBX3	100	98.928	ENSMNEG00000045109	YBX3	100	98.928	Macaca_nemestrina
ENSCATG00000034411	YBX3	92	86.006	ENSMLEG00000033618	YBX3	79	99.652	Mandrillus_leucophaeus
ENSCATG00000034411	YBX3	70	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSCATG00000034411	YBX3	88	88.073	ENSMAUG00000012185	Ybx3	98	85.670	Mesocricetus_auratus
ENSCATG00000034411	YBX3	100	74.013	ENSMICG00000031459	-	100	69.408	Microcebus_murinus
ENSCATG00000034411	YBX3	100	89.812	ENSMICG00000038002	-	100	91.153	Microcebus_murinus
ENSCATG00000034411	YBX3	83	88.746	ENSMOCG00000016291	Ybx3	96	90.508	Microtus_ochrogaster
ENSCATG00000034411	YBX3	77	82.639	ENSMODG00000018248	YBX3	91	83.333	Monodelphis_domestica
ENSCATG00000034411	YBX3	85	88.679	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.646	Mus_caroli
ENSCATG00000034411	YBX3	85	88.679	ENSMUSG00000030189	Ybx3	100	83.646	Mus_musculus
ENSCATG00000034411	YBX3	85	88.679	MGP_PahariEiJ_G0022709	Ybx3	100	83.646	Mus_pahari
ENSCATG00000034411	YBX3	85	88.994	MGP_SPRETEiJ_G0029994	Ybx3	100	83.914	Mus_spretus
ENSCATG00000034411	YBX3	100	79.265	ENSMPUG00000011810	YBX3	100	78.740	Mustela_putorius_furo
ENSCATG00000034411	YBX3	71	92.565	ENSMLUG00000007476	YBX3	100	90.706	Myotis_lucifugus
ENSCATG00000034411	YBX3	79	85.859	ENSNGAG00000000710	Ybx3	91	83.333	Nannospalax_galili
ENSCATG00000034411	YBX3	95	93.521	ENSNLEG00000034844	YBX3	100	93.521	Nomascus_leucogenys
ENSCATG00000034411	YBX3	82	80.263	ENSODEG00000017957	YBX3	94	80.685	Octodon_degus
ENSCATG00000034411	YBX3	79	86.780	ENSOCUG00000001889	YBX3	85	86.441	Oryctolagus_cuniculus
ENSCATG00000034411	YBX3	100	89.474	ENSOGAG00000013245	YBX3	100	89.211	Otolemur_garnettii
ENSCATG00000034411	YBX3	69	98.980	ENSOARG00000020919	YBX3	99	81.818	Ovis_aries
ENSCATG00000034411	YBX3	100	91.421	ENSPPAG00000039068	YBX3	100	91.421	Pan_paniscus
ENSCATG00000034411	YBX3	100	92.246	ENSPPRG00000005859	YBX3	100	93.443	Panthera_pardus
ENSCATG00000034411	YBX3	76	92.982	ENSPTIG00000005322	YBX3	81	92.334	Panthera_tigris_altaica
ENSCATG00000034411	YBX3	100	98.663	ENSPTRG00000004681	YBX3	100	98.663	Pan_troglodytes
ENSCATG00000034411	YBX3	100	99.732	ENSPANG00000010280	YBX3	100	99.732	Papio_anubis
ENSCATG00000034411	YBX3	57	99.038	ENSPSIG00000009247	YBX3	95	100.000	Pelodiscus_sinensis
ENSCATG00000034411	YBX3	82	87.903	ENSPEMG00000010391	-	85	90.265	Peromyscus_maniculatus_bairdii
ENSCATG00000034411	YBX3	87	88.580	ENSPEMG00000012132	-	99	86.604	Peromyscus_maniculatus_bairdii
ENSCATG00000034411	YBX3	69	81.538	ENSPCIG00000029949	YBX3	100	79.615	Phascolarctos_cinereus
ENSCATG00000034411	YBX3	100	98.123	ENSPPYG00000004279	YBX3	100	98.123	Pongo_abelii
ENSCATG00000034411	YBX3	79	88.055	ENSPCAG00000001397	YBX3	98	89.236	Procavia_capensis
ENSCATG00000034411	YBX3	54	68.421	ENSPCOG00000011663	YBX3	100	85.441	Propithecus_coquereli
ENSCATG00000034411	YBX3	100	78.667	ENSPVAG00000006740	YBX3	77	91.379	Pteropus_vampyrus
ENSCATG00000034411	YBX3	85	89.308	ENSRNOG00000005480	Ybx3	100	83.914	Rattus_norvegicus
ENSCATG00000034411	YBX3	100	97.855	ENSRBIG00000039208	YBX3	100	97.855	Rhinopithecus_bieti
ENSCATG00000034411	YBX3	100	98.123	ENSRROG00000029638	YBX3	100	98.123	Rhinopithecus_roxellana
ENSCATG00000034411	YBX3	92	87.172	ENSSBOG00000030573	YBX3	87	95.254	Saimiri_boliviensis_boliviensis
ENSCATG00000034411	YBX3	65	98.837	ENSSHAG00000003262	YBX3	98	80.756	Sarcophilus_harrisii
ENSCATG00000034411	YBX3	100	88.189	ENSSSCG00000000633	YBX3	100	90.026	Sus_scrofa
ENSCATG00000034411	YBX3	70	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSCATG00000034411	YBX3	100	85.791	ENSTBEG00000012570	YBX3	81	93.857	Tupaia_belangeri
ENSCATG00000034411	YBX3	71	83.835	ENSTTRG00000008045	YBX3	100	83.835	Tursiops_truncatus
ENSCATG00000034411	YBX3	75	87.410	ENSUAMG00000016662	YBX3	100	87.770	Ursus_americanus
ENSCATG00000034411	YBX3	76	90.877	ENSUMAG00000016118	YBX3	94	90.941	Ursus_maritimus
ENSCATG00000034411	YBX3	57	100.000	ENSVPAG00000000876	YBX3	100	71.831	Vicugna_pacos
ENSCATG00000034411	YBX3	75	88.489	ENSVVUG00000004956	YBX3	100	89.209	Vulpes_vulpes
ENSCATG00000034411	YBX3	53	92.222	ENSXETG00000016239	ybx3	90	64.602	Xenopus_tropicalis