EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCATG00000040306 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Cercocebus_atys
Status: putative
Strand: Plus strand
Length: 23398 bases
Position: chrKQ011503.1:9511137-9534534
Accession: 105601715
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCATP00000034830	UPF1_Zn_bind	PF09416.10	9.3e-75	1	1
ENSCATP00000034826	UPF1_Zn_bind	PF09416.10	9.8e-75	1	1
ENSCATP00000034830	ResIII	PF04851.15	3.5e-05	1	1
ENSCATP00000034826	ResIII	PF04851.15	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCATT00000059123	UPF1-203	4917	-	ENSCATP00000034842	373 (aa)	-	A0A2K5NBH3
ENSCATT00000059111	UPF1-202	3126	-	ENSCATP00000034830	1041 (aa)	-	A0A2K5NBW9
ENSCATT00000059107	UPF1-201	3222	XM_012094480	ENSCATP00000034826	1073 (aa)	XP_011949870	A0A2K5NBM5

Gene Model

Click here to download ENSCATG00000040306's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCATG00000040306's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCATG00000040306	UPF1	98	98.411	ENSG00000005007	UPF1	95	98.411	Homo_sapiens
ENSCATG00000040306	UPF1	97	94.084	ENSAPOG00000010916	-	94	94.179	Acanthochromis_polyacanthus
ENSCATG00000040306	UPF1	98	92.235	ENSAPOG00000023773	upf1	94	92.586	Acanthochromis_polyacanthus
ENSCATG00000040306	UPF1	98	99.620	ENSAMEG00000011474	UPF1	94	99.620	Ailuropoda_melanoleuca
ENSCATG00000040306	UPF1	98	91.706	ENSACIG00000019949	upf1	94	92.586	Amphilophus_citrinellus
ENSCATG00000040306	UPF1	97	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSCATG00000040306	UPF1	97	94.084	ENSAOCG00000006352	-	100	91.426	Amphiprion_ocellaris
ENSCATG00000040306	UPF1	98	91.722	ENSAOCG00000018519	upf1	94	92.568	Amphiprion_ocellaris
ENSCATG00000040306	UPF1	98	91.722	ENSAPEG00000016344	upf1	94	92.568	Amphiprion_percula
ENSCATG00000040306	UPF1	97	94.084	ENSAPEG00000006292	-	100	91.426	Amphiprion_percula
ENSCATG00000040306	UPF1	98	90.833	ENSATEG00000017867	upf1	94	91.925	Anabas_testudineus
ENSCATG00000040306	UPF1	97	94.084	ENSATEG00000016606	-	94	94.179	Anabas_testudineus
ENSCATG00000040306	UPF1	98	98.097	ENSAPLG00000009175	UPF1	99	98.097	Anas_platyrhynchos
ENSCATG00000040306	UPF1	100	96.150	ENSANAG00000024107	UPF1	99	96.150	Aotus_nancymaae
ENSCATG00000040306	UPF1	97	93.983	ENSACLG00000022630	-	94	93.983	Astatotilapia_calliptera
ENSCATG00000040306	UPF1	98	91.517	ENSACLG00000007181	upf1	94	92.395	Astatotilapia_calliptera
ENSCATG00000040306	UPF1	98	94.112	ENSAMXG00000042187	upf1	94	94.852	Astyanax_mexicanus
ENSCATG00000040306	UPF1	98	99.620	ENSBTAG00000020922	UPF1	93	99.620	Bos_taurus
ENSCATG00000040306	UPF1	84	53.611	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSCATG00000040306	UPF1	98	98.411	ENSCJAG00000019627	UPF1	95	98.411	Callithrix_jacchus
ENSCATG00000040306	UPF1	98	99.620	ENSCAFG00000014578	UPF1	93	99.620	Canis_familiaris
ENSCATG00000040306	UPF1	98	98.574	ENSCAFG00020012347	UPF1	93	98.574	Canis_lupus_dingo
ENSCATG00000040306	UPF1	98	99.620	ENSCHIG00000011018	UPF1	93	99.620	Capra_hircus
ENSCATG00000040306	UPF1	98	99.618	ENSTSYG00000008877	UPF1	99	98.313	Carlito_syrichta
ENSCATG00000040306	UPF1	98	98.390	ENSCAPG00000005758	UPF1	96	98.390	Cavia_aperea
ENSCATG00000040306	UPF1	98	98.667	ENSCPOG00000025463	UPF1	95	98.667	Cavia_porcellus
ENSCATG00000040306	UPF1	98	98.411	ENSCCAG00000032175	UPF1	95	98.411	Cebus_capucinus
ENSCATG00000040306	UPF1	98	99.618	ENSCLAG00000004037	UPF1	99	99.618	Chinchilla_lanigera
ENSCATG00000040306	UPF1	98	98.950	ENSCSAG00000005276	UPF1	93	98.950	Chlorocebus_sabaeus
ENSCATG00000040306	UPF1	98	97.343	ENSCPBG00000012513	UPF1	94	97.343	Chrysemys_picta_bellii
ENSCATG00000040306	UPF1	72	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSCATG00000040306	UPF1	97	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSCATG00000040306	UPF1	99	97.866	ENSCANG00000029819	UPF1	99	97.866	Colobus_angolensis_palliatus
ENSCATG00000040306	UPF1	98	96.720	ENSCGRG00001021067	Upf1	95	96.720	Cricetulus_griseus_chok1gshd
ENSCATG00000040306	UPF1	98	99.046	ENSCGRG00000013480	Upf1	98	99.046	Cricetulus_griseus_crigri
ENSCATG00000040306	UPF1	97	94.078	ENSCSEG00000016159	-	94	94.078	Cynoglossus_semilaevis
ENSCATG00000040306	UPF1	98	87.226	ENSCSEG00000017239	upf1	94	87.417	Cynoglossus_semilaevis
ENSCATG00000040306	UPF1	97	93.893	ENSCVAG00000010561	upf1	94	93.893	Cyprinodon_variegatus
ENSCATG00000040306	UPF1	98	93.922	ENSDARG00000016302	upf1	94	94.662	Danio_rerio
ENSCATG00000040306	UPF1	98	96.759	ENSDORG00000009984	Upf1	95	96.759	Dipodomys_ordii
ENSCATG00000040306	UPF1	82	73.631	FBgn0030354	Upf1	80	69.650	Drosophila_melanogaster
ENSCATG00000040306	UPF1	52	88.267	ENSEBUG00000010069	upf1	88	89.174	Eptatretus_burgeri
ENSCATG00000040306	UPF1	98	98.479	ENSEASG00005006549	UPF1	93	98.479	Equus_asinus_asinus
ENSCATG00000040306	UPF1	98	98.479	ENSECAG00000010639	UPF1	93	98.479	Equus_caballus
ENSCATG00000040306	UPF1	97	93.264	ENSELUG00000012916	-	94	93.270	Esox_lucius
ENSCATG00000040306	UPF1	98	91.399	ENSELUG00000020917	upf1	94	91.841	Esox_lucius
ENSCATG00000040306	UPF1	98	99.525	ENSFCAG00000009757	UPF1	93	99.525	Felis_catus
ENSCATG00000040306	UPF1	98	95.911	ENSFALG00000009312	UPF1	98	95.911	Ficedula_albicollis
ENSCATG00000040306	UPF1	98	99.523	ENSFDAG00000014816	UPF1	99	99.523	Fukomys_damarensis
ENSCATG00000040306	UPF1	89	93.648	ENSFHEG00000016276	-	95	93.829	Fundulus_heteroclitus
ENSCATG00000040306	UPF1	98	89.603	ENSFHEG00000006428	upf1	94	89.603	Fundulus_heteroclitus
ENSCATG00000040306	UPF1	97	93.702	ENSGMOG00000007541	upf1	94	94.275	Gadus_morhua
ENSCATG00000040306	UPF1	98	97.812	ENSGALG00000003220	UPF1	93	97.812	Gallus_gallus
ENSCATG00000040306	UPF1	65	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSCATG00000040306	UPF1	97	93.792	ENSGAFG00000004831	upf1	94	93.792	Gambusia_affinis
ENSCATG00000040306	UPF1	98	97.716	ENSGAGG00000022217	UPF1	94	97.716	Gopherus_agassizii
ENSCATG00000040306	UPF1	98	98.950	ENSGGOG00000002608	UPF1	98	98.950	Gorilla_gorilla
ENSCATG00000040306	UPF1	84	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSCATG00000040306	UPF1	84	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSCATG00000040306	UPF1	98	99.332	ENSHGLG00000010900	UPF1	93	99.332	Heterocephalus_glaber_female
ENSCATG00000040306	UPF1	98	97.615	ENSHGLG00100005904	UPF1	96	97.615	Heterocephalus_glaber_male
ENSCATG00000040306	UPF1	97	92.932	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSCATG00000040306	UPF1	98	94.667	ENSIPUG00000005108	UPF1	94	95.138	Ictalurus_punctatus
ENSCATG00000040306	UPF1	98	98.037	ENSSTOG00000009196	UPF1	95	98.037	Ictidomys_tridecemlineatus
ENSCATG00000040306	UPF1	98	97.290	ENSJJAG00000023151	Upf1	95	97.290	Jaculus_jaculus
ENSCATG00000040306	UPF1	97	94.179	ENSKMAG00000004962	upf1	94	94.179	Kryptolebias_marmoratus
ENSCATG00000040306	UPF1	97	93.893	ENSLBEG00000027848	-	94	93.989	Labrus_bergylta
ENSCATG00000040306	UPF1	98	90.440	ENSLBEG00000014862	upf1	94	91.910	Labrus_bergylta
ENSCATG00000040306	UPF1	67	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSCATG00000040306	UPF1	98	96.198	ENSLOCG00000002072	upf1	95	96.198	Lepisosteus_oculatus
ENSCATG00000040306	UPF1	98	99.049	ENSLAFG00000014963	UPF1	95	97.848	Loxodonta_africana
ENSCATG00000040306	UPF1	99	98.367	ENSMFAG00000037748	UPF1	95	98.411	Macaca_fascicularis
ENSCATG00000040306	UPF1	98	98.411	ENSMMUG00000023286	UPF1	95	98.411	Macaca_mulatta
ENSCATG00000040306	UPF1	98	98.411	ENSMNEG00000000046	UPF1	95	98.411	Macaca_nemestrina
ENSCATG00000040306	UPF1	98	100.000	ENSMLEG00000028404	UPF1	99	100.000	Mandrillus_leucophaeus
ENSCATG00000040306	UPF1	98	90.645	ENSMAMG00000006229	upf1	94	91.925	Mastacembelus_armatus
ENSCATG00000040306	UPF1	97	93.321	ENSMAMG00000006231	-	94	93.893	Mastacembelus_armatus
ENSCATG00000040306	UPF1	98	90.410	ENSMZEG00005003489	upf1	94	92.170	Maylandia_zebra
ENSCATG00000040306	UPF1	97	93.983	ENSMZEG00005016386	-	94	93.983	Maylandia_zebra
ENSCATG00000040306	UPF1	98	97.624	ENSMGAG00000004745	UPF1	100	97.624	Meleagris_gallopavo
ENSCATG00000040306	UPF1	98	99.046	ENSMAUG00000011398	Upf1	95	99.046	Mesocricetus_auratus
ENSCATG00000040306	UPF1	99	96.214	ENSMICG00000001659	UPF1	96	96.214	Microcebus_murinus
ENSCATG00000040306	UPF1	98	97.749	ENSMOCG00000005699	Upf1	95	97.749	Microtus_ochrogaster
ENSCATG00000040306	UPF1	98	91.985	ENSMMOG00000007881	upf1	94	92.557	Mola_mola
ENSCATG00000040306	UPF1	97	91.794	ENSMMOG00000007537	-	99	91.889	Mola_mola
ENSCATG00000040306	UPF1	98	99.141	ENSMODG00000003689	UPF1	95	97.727	Monodelphis_domestica
ENSCATG00000040306	UPF1	98	91.722	ENSMALG00000000144	upf1	94	92.264	Monopterus_albus
ENSCATG00000040306	UPF1	98	92.600	ENSMALG00000018100	-	94	92.681	Monopterus_albus
ENSCATG00000040306	UPF1	98	97.657	MGP_CAROLIEiJ_G0031142	Upf1	95	97.657	Mus_caroli
ENSCATG00000040306	UPF1	98	97.657	ENSMUSG00000058301	Upf1	95	97.657	Mus_musculus
ENSCATG00000040306	UPF1	98	97.657	MGP_PahariEiJ_G0021607	Upf1	95	97.657	Mus_pahari
ENSCATG00000040306	UPF1	98	97.657	MGP_SPRETEiJ_G0032260	Upf1	95	97.657	Mus_spretus
ENSCATG00000040306	UPF1	98	98.574	ENSMPUG00000015516	UPF1	93	98.574	Mustela_putorius_furo
ENSCATG00000040306	UPF1	98	98.384	ENSMLUG00000012122	UPF1	93	98.384	Myotis_lucifugus
ENSCATG00000040306	UPF1	98	97.657	ENSNGAG00000024107	Upf1	95	97.657	Nannospalax_galili
ENSCATG00000040306	UPF1	98	89.727	ENSNBRG00000000670	upf1	94	90.589	Neolamprologus_brichardi
ENSCATG00000040306	UPF1	97	92.885	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSCATG00000040306	UPF1	98	94.179	ENSNLEG00000006062	UPF1	99	94.179	Nomascus_leucogenys
ENSCATG00000040306	UPF1	80	94.314	ENSMEUG00000014146	-	76	94.314	Notamacropus_eugenii
ENSCATG00000040306	UPF1	98	90.553	ENSOPRG00000014018	UPF1	99	90.544	Ochotona_princeps
ENSCATG00000040306	UPF1	98	99.056	ENSODEG00000012426	UPF1	95	99.056	Octodon_degus
ENSCATG00000040306	UPF1	98	90.689	ENSONIG00000010452	upf1	94	92.453	Oreochromis_niloticus
ENSCATG00000040306	UPF1	97	94.078	ENSONIG00000012729	-	94	94.078	Oreochromis_niloticus
ENSCATG00000040306	UPF1	98	98.481	ENSOANG00000004568	UPF1	93	98.481	Ornithorhynchus_anatinus
ENSCATG00000040306	UPF1	97	93.798	ENSORLG00000008453	upf1	94	93.798	Oryzias_latipes
ENSCATG00000040306	UPF1	97	93.798	ENSORLG00020014758	upf1	94	93.798	Oryzias_latipes_hni
ENSCATG00000040306	UPF1	97	93.798	ENSORLG00015010165	upf1	100	89.692	Oryzias_latipes_hsok
ENSCATG00000040306	UPF1	97	93.893	ENSOMEG00000003665	upf1	94	93.893	Oryzias_melastigma
ENSCATG00000040306	UPF1	98	97.290	ENSOGAG00000012866	UPF1	95	97.290	Otolemur_garnettii
ENSCATG00000040306	UPF1	95	99.212	ENSOARG00000010739	UPF1	93	99.212	Ovis_aries
ENSCATG00000040306	UPF1	98	98.873	ENSPPAG00000043884	UPF1	97	98.873	Pan_paniscus
ENSCATG00000040306	UPF1	98	99.525	ENSPPRG00000023470	UPF1	93	99.525	Panthera_pardus
ENSCATG00000040306	UPF1	98	96.388	ENSPTIG00000010159	UPF1	99	96.388	Panthera_tigris_altaica
ENSCATG00000040306	UPF1	98	98.411	ENSPTRG00000010721	UPF1	95	98.411	Pan_troglodytes
ENSCATG00000040306	UPF1	99	98.367	ENSPANG00000008847	UPF1	95	98.411	Papio_anubis
ENSCATG00000040306	UPF1	92	93.152	ENSPKIG00000006069	upf1	94	93.604	Paramormyrops_kingsleyae
ENSCATG00000040306	UPF1	71	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSCATG00000040306	UPF1	98	90.503	ENSPMGG00000017327	upf1	94	90.702	Periophthalmus_magnuspinnatus
ENSCATG00000040306	UPF1	98	97.751	ENSPEMG00000001085	Upf1	95	97.751	Peromyscus_maniculatus_bairdii
ENSCATG00000040306	UPF1	98	88.731	ENSPMAG00000001206	upf1	94	89.207	Petromyzon_marinus
ENSCATG00000040306	UPF1	98	98.092	ENSPCIG00000006156	UPF1	93	98.092	Phascolarctos_cinereus
ENSCATG00000040306	UPF1	98	90.832	ENSPLAG00000018155	-	94	90.832	Poecilia_latipinna
ENSCATG00000040306	UPF1	97	93.887	ENSPLAG00000016232	-	94	93.887	Poecilia_latipinna
ENSCATG00000040306	UPF1	98	91.429	ENSPMEG00000011443	-	94	91.429	Poecilia_mexicana
ENSCATG00000040306	UPF1	97	93.983	ENSPMEG00000016319	-	94	93.983	Poecilia_mexicana
ENSCATG00000040306	UPF1	98	91.399	ENSPREG00000009940	upf1	94	91.399	Poecilia_reticulata
ENSCATG00000040306	UPF1	97	93.696	ENSPREG00000011247	-	94	93.696	Poecilia_reticulata
ENSCATG00000040306	UPF1	98	93.178	ENSPPYG00000009752	UPF1	95	93.178	Pongo_abelii
ENSCATG00000040306	UPF1	68	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSCATG00000040306	UPF1	98	99.714	ENSPCOG00000023813	UPF1	96	97.230	Propithecus_coquereli
ENSCATG00000040306	UPF1	65	100.000	ENSPVAG00000003183	UPF1	62	100.000	Pteropus_vampyrus
ENSCATG00000040306	UPF1	98	90.410	ENSPNYG00000003694	upf1	94	92.170	Pundamilia_nyererei
ENSCATG00000040306	UPF1	97	93.983	ENSPNYG00000016731	-	94	93.983	Pundamilia_nyererei
ENSCATG00000040306	UPF1	98	94.112	ENSPNAG00000025614	upf1	94	94.852	Pygocentrus_nattereri
ENSCATG00000040306	UPF1	98	97.657	ENSRNOG00000020134	Upf1	95	97.657	Rattus_norvegicus
ENSCATG00000040306	UPF1	99	95.903	ENSRBIG00000013894	UPF1	98	98.593	Rhinopithecus_bieti
ENSCATG00000040306	UPF1	99	98.231	ENSRROG00000040935	UPF1	99	98.231	Rhinopithecus_roxellana
ENSCATG00000040306	UPF1	77	56.348	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSCATG00000040306	UPF1	100	97.796	ENSSBOG00000023632	UPF1	99	97.796	Saimiri_boliviensis_boliviensis
ENSCATG00000040306	UPF1	98	98.765	ENSSHAG00000010499	UPF1	100	98.765	Sarcophilus_harrisii
ENSCATG00000040306	UPF1	98	96.282	ENSSFOG00015021095	upf1	99	96.282	Scleropages_formosus
ENSCATG00000040306	UPF1	97	94.084	ENSSMAG00000021018	-	94	94.179	Scophthalmus_maximus
ENSCATG00000040306	UPF1	98	89.916	ENSSMAG00000005055	upf1	94	91.259	Scophthalmus_maximus
ENSCATG00000040306	UPF1	98	90.833	ENSSDUG00000013320	upf1	94	92.113	Seriola_dumerili
ENSCATG00000040306	UPF1	97	94.275	ENSSDUG00000009629	-	94	94.370	Seriola_dumerili
ENSCATG00000040306	UPF1	98	91.690	ENSSLDG00000020868	upf1	94	92.431	Seriola_lalandi_dorsalis
ENSCATG00000040306	UPF1	97	94.275	ENSSLDG00000006878	-	94	94.370	Seriola_lalandi_dorsalis
ENSCATG00000040306	UPF1	98	97.621	ENSSPUG00000010538	UPF1	94	97.621	Sphenodon_punctatus
ENSCATG00000040306	UPF1	97	94.269	ENSSPAG00000011521	-	94	94.269	Stegastes_partitus
ENSCATG00000040306	UPF1	98	89.773	ENSSPAG00000000003	upf1	94	90.200	Stegastes_partitus
ENSCATG00000040306	UPF1	98	99.525	ENSSSCG00000039301	UPF1	99	98.479	Sus_scrofa
ENSCATG00000040306	UPF1	80	91.512	ENSTGUG00000001057	UPF1	88	97.483	Taeniopygia_guttata
ENSCATG00000040306	UPF1	97	93.028	ENSTRUG00000005131	-	94	93.123	Takifugu_rubripes
ENSCATG00000040306	UPF1	98	92.073	ENSTRUG00000000150	upf1	95	91.447	Takifugu_rubripes
ENSCATG00000040306	UPF1	98	94.677	ENSTTRG00000011544	UPF1	93	94.842	Tursiops_truncatus
ENSCATG00000040306	UPF1	98	98.479	ENSUAMG00000007093	UPF1	93	98.479	Ursus_americanus
ENSCATG00000040306	UPF1	99	98.017	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSCATG00000040306	UPF1	98	98.574	ENSVVUG00000007797	UPF1	93	98.574	Vulpes_vulpes
ENSCATG00000040306	UPF1	98	83.650	ENSXETG00000013602	upf1	92	83.635	Xenopus_tropicalis
ENSCATG00000040306	UPF1	97	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSCATG00000040306	UPF1	94	91.098	ENSXCOG00000015275	-	91	91.098	Xiphophorus_couchianus
ENSCATG00000040306	UPF1	98	91.317	ENSXMAG00000001703	-	94	91.317	Xiphophorus_maculatus
ENSCATG00000040306	UPF1	97	93.792	ENSXMAG00000002540	-	94	93.792	Xiphophorus_maculatus