EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCATG00000041794 (Gene tree)
Gene ID: 105586343
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Cercocebus_atys
Status: putative
Strand: Plus strand
Length: 133887 bases
Position: chrKQ012929.1:2731125-2865011
Accession: 105586343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCATP00000038206	XRN_N	PF03159.18	6.2e-96	1	1
ENSCATP00000038205	XRN_N	PF03159.18	6.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCATT00000062509	XRN1-202	10073	XM_012061218	ENSCATP00000038206	1694 (aa)	XP_011916608	A0A2K5NLK3
ENSCATT00000062508	XRN1-201	10112	XM_012061214	ENSCATP00000038205	1707 (aa)	XP_011916604	A0A2K5NLE1

Gene Model

Click here to download ENSCATG00000041794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCATG00000041794's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCATG00000041794	XRN1	100	97.580	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSCATG00000041794	XRN1	95	72.861	ENSAPOG00000000622	xrn1	93	76.119	Acanthochromis_polyacanthus
ENSCATG00000041794	XRN1	100	91.988	ENSAMEG00000012538	XRN1	100	91.988	Ailuropoda_melanoleuca
ENSCATG00000041794	XRN1	95	72.476	ENSACIG00000001057	xrn1	94	72.638	Amphilophus_citrinellus
ENSCATG00000041794	XRN1	100	61.060	ENSAOCG00000014097	xrn1	95	69.478	Amphiprion_ocellaris
ENSCATG00000041794	XRN1	100	60.654	ENSAPEG00000006620	xrn1	98	62.902	Amphiprion_percula
ENSCATG00000041794	XRN1	94	71.201	ENSATEG00000009752	xrn1	97	71.270	Anabas_testudineus
ENSCATG00000041794	XRN1	99	76.365	ENSAPLG00000004905	XRN1	100	76.365	Anas_platyrhynchos
ENSCATG00000041794	XRN1	100	72.635	ENSACAG00000004985	XRN1	100	72.635	Anolis_carolinensis
ENSCATG00000041794	XRN1	100	96.812	ENSANAG00000029013	XRN1	100	96.812	Aotus_nancymaae
ENSCATG00000041794	XRN1	100	60.661	ENSACLG00000004806	xrn1	96	62.218	Astatotilapia_calliptera
ENSCATG00000041794	XRN1	99	60.894	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSCATG00000041794	XRN1	100	92.384	ENSBTAG00000011524	XRN1	100	92.209	Bos_taurus
ENSCATG00000041794	XRN1	71	39.011	WBGene00012730	xrn-1	80	39.256	Caenorhabditis_elegans
ENSCATG00000041794	XRN1	100	96.989	ENSCJAG00000001872	XRN1	100	96.989	Callithrix_jacchus
ENSCATG00000041794	XRN1	100	93.322	ENSCAFG00000007783	XRN1	100	93.322	Canis_familiaris
ENSCATG00000041794	XRN1	100	92.259	ENSCAFG00020009120	XRN1	99	94.286	Canis_lupus_dingo
ENSCATG00000041794	XRN1	99	90.399	ENSCHIG00000019192	XRN1	99	90.226	Capra_hircus
ENSCATG00000041794	XRN1	100	94.336	ENSTSYG00000002705	XRN1	100	94.336	Carlito_syrichta
ENSCATG00000041794	XRN1	55	76.783	ENSCAPG00000004604	-	99	76.783	Cavia_aperea
ENSCATG00000041794	XRN1	100	97.462	ENSCCAG00000034800	XRN1	99	99.208	Cebus_capucinus
ENSCATG00000041794	XRN1	100	88.171	ENSCLAG00000001451	XRN1	99	96.355	Chinchilla_lanigera
ENSCATG00000041794	XRN1	100	99.649	ENSCSAG00000011265	XRN1	100	99.649	Chlorocebus_sabaeus
ENSCATG00000041794	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSCATG00000041794	XRN1	71	45.327	ENSCSAVG00000008584	-	98	44.739	Ciona_savignyi
ENSCATG00000041794	XRN1	100	99.233	ENSCANG00000037495	XRN1	100	99.233	Colobus_angolensis_palliatus
ENSCATG00000041794	XRN1	100	88.042	ENSCGRG00001019411	Xrn1	99	96.355	Cricetulus_griseus_chok1gshd
ENSCATG00000041794	XRN1	100	88.042	ENSCGRG00000012464	Xrn1	99	96.355	Cricetulus_griseus_crigri
ENSCATG00000041794	XRN1	95	67.314	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCATG00000041794	XRN1	67	67.544	ENSCVAG00000013089	xrn1	99	71.958	Cyprinodon_variegatus
ENSCATG00000041794	XRN1	99	63.164	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSCATG00000041794	XRN1	100	87.269	ENSDORG00000013833	Xrn1	100	87.211	Dipodomys_ordii
ENSCATG00000041794	XRN1	75	39.860	FBgn0020261	pcm	76	39.768	Drosophila_melanogaster
ENSCATG00000041794	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCATG00000041794	XRN1	100	93.146	ENSEASG00005002687	XRN1	99	96.513	Equus_asinus_asinus
ENSCATG00000041794	XRN1	100	93.146	ENSECAG00000008301	XRN1	100	93.146	Equus_caballus
ENSCATG00000041794	XRN1	92	83.382	ENSEEUG00000011323	XRN1	92	83.382	Erinaceus_europaeus
ENSCATG00000041794	XRN1	100	61.582	ENSELUG00000000169	xrn1	94	63.450	Esox_lucius
ENSCATG00000041794	XRN1	100	89.696	ENSFCAG00000027589	XRN1	99	96.264	Felis_catus
ENSCATG00000041794	XRN1	100	74.902	ENSFALG00000007021	XRN1	100	74.958	Ficedula_albicollis
ENSCATG00000041794	XRN1	100	89.094	ENSFDAG00000020494	XRN1	99	95.880	Fukomys_damarensis
ENSCATG00000041794	XRN1	84	68.452	ENSGMOG00000006396	xrn1	80	68.452	Gadus_morhua
ENSCATG00000041794	XRN1	100	75.183	ENSGALG00000002706	XRN1	100	75.183	Gallus_gallus
ENSCATG00000041794	XRN1	100	59.795	ENSGACG00000014328	xrn1	96	61.452	Gasterosteus_aculeatus
ENSCATG00000041794	XRN1	95	78.360	ENSGAGG00000017535	XRN1	99	78.360	Gopherus_agassizii
ENSCATG00000041794	XRN1	100	97.774	ENSGGOG00000008047	XRN1	100	97.774	Gorilla_gorilla
ENSCATG00000041794	XRN1	96	70.500	ENSHBUG00000005908	xrn1	98	72.690	Haplochromis_burtoni
ENSCATG00000041794	XRN1	100	90.254	ENSHGLG00000014476	XRN1	99	96.830	Heterocephalus_glaber_female
ENSCATG00000041794	XRN1	100	90.254	ENSHGLG00100015130	XRN1	99	96.830	Heterocephalus_glaber_male
ENSCATG00000041794	XRN1	97	69.945	ENSHCOG00000014062	xrn1	96	70.095	Hippocampus_comes
ENSCATG00000041794	XRN1	99	62.723	ENSIPUG00000015229	xrn1	96	64.766	Ictalurus_punctatus
ENSCATG00000041794	XRN1	100	91.917	ENSSTOG00000013552	XRN1	99	97.781	Ictidomys_tridecemlineatus
ENSCATG00000041794	XRN1	98	87.119	ENSJJAG00000010863	Xrn1	99	94.194	Jaculus_jaculus
ENSCATG00000041794	XRN1	94	61.355	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSCATG00000041794	XRN1	100	59.875	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCATG00000041794	XRN1	100	70.046	ENSLACG00000009020	XRN1	97	71.150	Latimeria_chalumnae
ENSCATG00000041794	XRN1	100	65.920	ENSLOCG00000007944	xrn1	98	66.178	Lepisosteus_oculatus
ENSCATG00000041794	XRN1	63	96.258	ENSLAFG00000015426	XRN1	100	96.258	Loxodonta_africana
ENSCATG00000041794	XRN1	100	99.824	ENSMFAG00000032599	XRN1	100	99.824	Macaca_fascicularis
ENSCATG00000041794	XRN1	100	99.883	ENSMMUG00000014038	XRN1	100	99.883	Macaca_mulatta
ENSCATG00000041794	XRN1	100	99.590	ENSMNEG00000034217	XRN1	100	99.590	Macaca_nemestrina
ENSCATG00000041794	XRN1	94	70.955	ENSMAMG00000013219	xrn1	94	77.113	Mastacembelus_armatus
ENSCATG00000041794	XRN1	100	60.364	ENSMZEG00005015099	xrn1	96	62.100	Maylandia_zebra
ENSCATG00000041794	XRN1	99	75.116	ENSMGAG00000006333	XRN1	100	75.116	Meleagris_gallopavo
ENSCATG00000041794	XRN1	100	94.464	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCATG00000041794	XRN1	58	95.246	ENSMOCG00000008665	Xrn1	99	95.246	Microtus_ochrogaster
ENSCATG00000041794	XRN1	100	82.497	ENSMODG00000021236	XRN1	100	82.205	Monodelphis_domestica
ENSCATG00000041794	XRN1	100	58.007	ENSMALG00000004098	xrn1	100	57.616	Monopterus_albus
ENSCATG00000041794	XRN1	96	95.419	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCATG00000041794	XRN1	100	86.944	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCATG00000041794	XRN1	100	86.655	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCATG00000041794	XRN1	100	86.886	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCATG00000041794	XRN1	100	93.673	ENSMPUG00000012040	XRN1	100	93.673	Mustela_putorius_furo
ENSCATG00000041794	XRN1	100	89.607	ENSMLUG00000016885	XRN1	100	89.492	Myotis_lucifugus
ENSCATG00000041794	XRN1	58	91.759	ENSNGAG00000023964	Xrn1	99	92.051	Nannospalax_galili
ENSCATG00000041794	XRN1	100	98.170	ENSNLEG00000004726	XRN1	100	98.170	Nomascus_leucogenys
ENSCATG00000041794	XRN1	77	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSCATG00000041794	XRN1	79	84.640	ENSOPRG00000007337	-	78	84.640	Ochotona_princeps
ENSCATG00000041794	XRN1	100	61.368	ENSONIG00000016673	xrn1	99	64.774	Oreochromis_niloticus
ENSCATG00000041794	XRN1	92	78.016	ENSOANG00000006735	XRN1	100	77.890	Ornithorhynchus_anatinus
ENSCATG00000041794	XRN1	100	90.430	ENSOCUG00000001861	XRN1	100	90.258	Oryctolagus_cuniculus
ENSCATG00000041794	XRN1	100	60.882	ENSORLG00000013005	xrn1	100	60.457	Oryzias_latipes
ENSCATG00000041794	XRN1	100	61.102	ENSORLG00020005559	xrn1	100	61.316	Oryzias_latipes_hni
ENSCATG00000041794	XRN1	100	61.136	ENSORLG00015022523	xrn1	96	62.300	Oryzias_latipes_hsok
ENSCATG00000041794	XRN1	92	72.838	ENSOMEG00000015397	xrn1	99	72.838	Oryzias_melastigma
ENSCATG00000041794	XRN1	100	91.276	ENSOGAG00000000170	XRN1	100	91.276	Otolemur_garnettii
ENSCATG00000041794	XRN1	99	92.903	ENSOARG00000006343	XRN1	99	92.727	Ovis_aries
ENSCATG00000041794	XRN1	100	97.657	ENSPPAG00000010180	XRN1	100	97.657	Pan_paniscus
ENSCATG00000041794	XRN1	100	93.805	ENSPPRG00000007125	XRN1	100	93.805	Panthera_pardus
ENSCATG00000041794	XRN1	100	93.864	ENSPTIG00000021081	XRN1	100	93.864	Panthera_tigris_altaica
ENSCATG00000041794	XRN1	100	97.774	ENSPTRG00000015482	XRN1	100	97.774	Pan_troglodytes
ENSCATG00000041794	XRN1	100	99.766	ENSPANG00000010638	XRN1	100	99.766	Papio_anubis
ENSCATG00000041794	XRN1	100	77.042	ENSPSIG00000018050	XRN1	100	77.156	Pelodiscus_sinensis
ENSCATG00000041794	XRN1	57	77.394	ENSPMGG00000002648	xrn1	98	78.650	Periophthalmus_magnuspinnatus
ENSCATG00000041794	XRN1	58	96.038	ENSPEMG00000020610	Xrn1	99	96.038	Peromyscus_maniculatus_bairdii
ENSCATG00000041794	XRN1	65	50.717	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSCATG00000041794	XRN1	100	81.760	ENSPCIG00000028735	XRN1	99	90.106	Phascolarctos_cinereus
ENSCATG00000041794	XRN1	91	64.574	ENSPFOG00000013932	xrn1	99	64.955	Poecilia_formosa
ENSCATG00000041794	XRN1	91	63.458	ENSPLAG00000021653	xrn1	99	64.295	Poecilia_latipinna
ENSCATG00000041794	XRN1	89	64.295	ENSPMEG00000003076	xrn1	95	64.809	Poecilia_mexicana
ENSCATG00000041794	XRN1	100	60.763	ENSPREG00000021147	xrn1	100	59.988	Poecilia_reticulata
ENSCATG00000041794	XRN1	100	97.891	ENSPPYG00000014172	XRN1	100	97.891	Pongo_abelii
ENSCATG00000041794	XRN1	90	81.801	ENSPCAG00000005638	XRN1	100	81.801	Procavia_capensis
ENSCATG00000041794	XRN1	100	94.985	ENSPCOG00000013089	XRN1	99	97.440	Propithecus_coquereli
ENSCATG00000041794	XRN1	96	92.548	ENSPVAG00000016265	XRN1	96	92.548	Pteropus_vampyrus
ENSCATG00000041794	XRN1	96	71.203	ENSPNYG00000010570	xrn1	94	71.259	Pundamilia_nyererei
ENSCATG00000041794	XRN1	99	60.794	ENSPNAG00000023531	xrn1	96	62.191	Pygocentrus_nattereri
ENSCATG00000041794	XRN1	100	87.637	ENSRNOG00000042951	Xrn1	100	87.522	Rattus_norvegicus
ENSCATG00000041794	XRN1	100	98.535	ENSRBIG00000041227	XRN1	100	98.535	Rhinopithecus_bieti
ENSCATG00000041794	XRN1	67	54.496	YGL173C	XRN1	81	34.434	Saccharomyces_cerevisiae
ENSCATG00000041794	XRN1	100	96.871	ENSSBOG00000029561	XRN1	100	96.871	Saimiri_boliviensis_boliviensis
ENSCATG00000041794	XRN1	99	81.904	ENSSHAG00000016207	XRN1	100	81.657	Sarcophilus_harrisii
ENSCATG00000041794	XRN1	100	61.396	ENSSFOG00015024211	xrn1	97	63.199	Scleropages_formosus
ENSCATG00000041794	XRN1	94	72.456	ENSSMAG00000016534	xrn1	95	72.456	Scophthalmus_maximus
ENSCATG00000041794	XRN1	93	72.231	ENSSDUG00000010306	xrn1	91	72.078	Seriola_dumerili
ENSCATG00000041794	XRN1	95	71.736	ENSSLDG00000021543	xrn1	97	71.587	Seriola_lalandi_dorsalis
ENSCATG00000041794	XRN1	68	85.537	ENSSARG00000007741	-	83	85.537	Sorex_araneus
ENSCATG00000041794	XRN1	100	77.191	ENSTGUG00000008498	XRN1	100	77.249	Taeniopygia_guttata
ENSCATG00000041794	XRN1	100	58.950	ENSTRUG00000004895	xrn1	96	75.365	Takifugu_rubripes
ENSCATG00000041794	XRN1	96	68.526	ENSTNIG00000017615	xrn1	96	60.216	Tetraodon_nigroviridis
ENSCATG00000041794	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.719	Tupaia_belangeri
ENSCATG00000041794	XRN1	100	89.221	ENSTTRG00000012914	XRN1	100	88.987	Tursiops_truncatus
ENSCATG00000041794	XRN1	100	92.799	ENSUAMG00000001608	XRN1	99	94.286	Ursus_americanus
ENSCATG00000041794	XRN1	100	94.672	ENSUMAG00000013625	XRN1	100	94.672	Ursus_maritimus
ENSCATG00000041794	XRN1	100	90.803	ENSVPAG00000004690	XRN1	100	90.803	Vicugna_pacos
ENSCATG00000041794	XRN1	100	94.259	ENSVVUG00000024461	XRN1	99	97.306	Vulpes_vulpes
ENSCATG00000041794	XRN1	100	69.240	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSCATG00000041794	XRN1	100	61.415	ENSXCOG00000007917	xrn1	95	62.902	Xiphophorus_couchianus
ENSCATG00000041794	XRN1	92	71.860	ENSXMAG00000018320	xrn1	98	71.941	Xiphophorus_maculatus