EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000016469 (Gene tree)
Gene ID: 108295834
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 24191 bases
Position: chrKV390086.1:457623-481813
Accession: 108295834
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000002884	CSD	PF00313.22	6e-26	1	1
ENSCCAP00000002879	CSD	PF00313.22	7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000017901	YBX3-201	2038	XM_017518164	ENSCCAP00000002879	372 (aa)	XP_017373653	A0A2K5PGX4
ENSCCAT00000017933	YBX3-202	1831	XM_017518168	ENSCCAP00000002884	303 (aa)	XP_017373657	A0A2K5PGY2

Gene Model

Click here to download ENSCCAG00000016469's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000016469's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000016469	YBX3	85	49.481	ENSCCAG00000020730	-	97	51.572
ENSCCAG00000016469	YBX3	73	54.148	ENSCCAG00000025907	-	83	56.522
ENSCCAG00000016469	YBX3	77	52.961	ENSCCAG00000006015	-	95	53.608
ENSCCAG00000016469	YBX3	67	86.275	ENSCCAG00000024381	-	97	54.452

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000016469	YBX3	100	96.774	ENSG00000060138	YBX3	100	96.774	Homo_sapiens
ENSCCAG00000016469	YBX3	96	84.916	ENSAMEG00000009393	YBX3	95	89.412	Ailuropoda_melanoleuca
ENSCCAG00000016469	YBX3	77	64.685	ENSAPLG00000003147	YBX3	68	100.000	Anas_platyrhynchos
ENSCCAG00000016469	YBX3	100	98.387	ENSANAG00000024492	-	100	98.734	Aotus_nancymaae
ENSCCAG00000016469	YBX3	98	87.692	ENSANAG00000033366	-	93	87.692	Aotus_nancymaae
ENSCCAG00000016469	YBX3	100	82.687	ENSBTAG00000009663	YBX3	88	81.471	Bos_taurus
ENSCCAG00000016469	YBX3	100	97.043	ENSCJAG00000021660	-	100	97.043	Callithrix_jacchus
ENSCCAG00000016469	YBX3	76	92.857	ENSCJAG00000033824	-	98	95.946	Callithrix_jacchus
ENSCCAG00000016469	YBX3	77	92.014	ENSCAFG00000013401	YBX3	100	92.661	Canis_familiaris
ENSCCAG00000016469	YBX3	100	87.200	ENSCAFG00020006412	YBX3	100	86.133	Canis_lupus_dingo
ENSCCAG00000016469	YBX3	100	82.687	ENSCHIG00000010863	YBX3	100	80.645	Capra_hircus
ENSCCAG00000016469	YBX3	77	94.425	ENSTSYG00000004204	-	88	94.425	Carlito_syrichta
ENSCCAG00000016469	YBX3	100	75.248	ENSTSYG00000035821	-	75	81.696	Carlito_syrichta
ENSCCAG00000016469	YBX3	77	86.411	ENSCAPG00000015039	YBX3	93	86.411	Cavia_aperea
ENSCCAG00000016469	YBX3	79	87.372	ENSCPOG00000011329	YBX3	83	90.625	Cavia_porcellus
ENSCCAG00000016469	YBX3	100	95.979	ENSCATG00000034411	YBX3	100	95.979	Cercocebus_atys
ENSCCAG00000016469	YBX3	77	86.760	ENSCLAG00000016030	YBX3	94	86.760	Chinchilla_lanigera
ENSCCAG00000016469	YBX3	100	96.515	ENSCSAG00000008744	YBX3	100	96.515	Chlorocebus_sabaeus
ENSCCAG00000016469	YBX3	94	82.659	ENSCHOG00000011988	YBX3	77	82.659	Choloepus_hoffmanni
ENSCCAG00000016469	YBX3	78	79.381	ENSCPBG00000014147	YBX3	81	78.498	Chrysemys_picta_bellii
ENSCCAG00000016469	YBX3	61	54.011	ENSCING00000010654	yb1/2/3	50	64.706	Ciona_intestinalis
ENSCCAG00000016469	YBX3	85	97.460	ENSCANG00000036801	YBX3	100	97.561	Colobus_angolensis_palliatus
ENSCCAG00000016469	YBX3	85	89.308	ENSCGRG00001016148	Ybx3	100	84.140	Cricetulus_griseus_chok1gshd
ENSCCAG00000016469	YBX3	77	90.411	ENSCGRG00000004563	Ybx3	98	89.041	Cricetulus_griseus_crigri
ENSCCAG00000016469	YBX3	90	80.896	ENSDORG00000009103	Ybx3	81	90.244	Dipodomys_ordii
ENSCCAG00000016469	YBX3	76	84.965	ENSETEG00000002557	YBX3	99	83.803	Echinops_telfairi
ENSCCAG00000016469	YBX3	100	85.484	ENSEASG00005014726	YBX3	100	85.215	Equus_asinus_asinus
ENSCCAG00000016469	YBX3	100	88.449	ENSECAG00000013777	YBX3	100	89.109	Equus_caballus
ENSCCAG00000016469	YBX3	76	92.254	ENSEEUG00000010415	YBX3	100	92.254	Erinaceus_europaeus
ENSCCAG00000016469	YBX3	100	92.131	ENSFCAG00000027748	YBX3	100	93.770	Felis_catus
ENSCCAG00000016469	YBX3	71	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSCCAG00000016469	YBX3	77	82.927	ENSFDAG00000021192	YBX3	92	82.927	Fukomys_damarensis
ENSCCAG00000016469	YBX3	91	73.455	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSCCAG00000016469	YBX3	73	83.710	ENSGAGG00000017780	YBX3	77	82.960	Gopherus_agassizii
ENSCCAG00000016469	YBX3	100	96.515	ENSGGOG00000001352	YBX3	100	96.515	Gorilla_gorilla
ENSCCAG00000016469	YBX3	74	78.545	ENSHGLG00000015495	-	80	75.636	Heterocephalus_glaber_female
ENSCCAG00000016469	YBX3	81	75.490	ENSHGLG00000014798	-	86	76.431	Heterocephalus_glaber_female
ENSCCAG00000016469	YBX3	72	88.991	ENSHGLG00100003589	YBX3	87	88.991	Heterocephalus_glaber_male
ENSCCAG00000016469	YBX3	93	84.104	ENSSTOG00000032577	-	94	84.706	Ictidomys_tridecemlineatus
ENSCCAG00000016469	YBX3	77	86.063	ENSSTOG00000002108	-	88	86.063	Ictidomys_tridecemlineatus
ENSCCAG00000016469	YBX3	79	68.687	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSCCAG00000016469	YBX3	100	89.785	ENSLAFG00000017247	YBX3	100	91.667	Loxodonta_africana
ENSCCAG00000016469	YBX3	100	96.237	ENSMFAG00000039369	YBX3	100	96.237	Macaca_fascicularis
ENSCCAG00000016469	YBX3	87	96.923	ENSMMUG00000022469	YBX3	100	96.923	Macaca_mulatta
ENSCCAG00000016469	YBX3	100	96.237	ENSMNEG00000045109	YBX3	100	96.237	Macaca_nemestrina
ENSCCAG00000016469	YBX3	94	82.906	ENSMLEG00000033618	YBX3	79	96.864	Mandrillus_leucophaeus
ENSCCAG00000016469	YBX3	70	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSCCAG00000016469	YBX3	88	88.650	ENSMAUG00000012185	Ybx3	92	90.169	Mesocricetus_auratus
ENSCCAG00000016469	YBX3	100	74.257	ENSMICG00000031459	-	86	74.000	Microcebus_murinus
ENSCCAG00000016469	YBX3	100	90.054	ENSMICG00000038002	-	100	91.667	Microcebus_murinus
ENSCCAG00000016469	YBX3	84	89.068	ENSMOCG00000016291	Ybx3	96	90.847	Microtus_ochrogaster
ENSCCAG00000016469	YBX3	77	82.292	ENSMODG00000018248	YBX3	91	82.986	Monodelphis_domestica
ENSCCAG00000016469	YBX3	85	88.365	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.602	Mus_caroli
ENSCCAG00000016469	YBX3	85	88.365	ENSMUSG00000030189	Ybx3	100	83.602	Mus_musculus
ENSCCAG00000016469	YBX3	85	88.994	MGP_PahariEiJ_G0022709	Ybx3	100	84.140	Mus_pahari
ENSCCAG00000016469	YBX3	85	88.679	MGP_SPRETEiJ_G0029994	Ybx3	100	83.871	Mus_spretus
ENSCCAG00000016469	YBX3	100	79.265	ENSMPUG00000011810	YBX3	100	78.740	Mustela_putorius_furo
ENSCCAG00000016469	YBX3	71	92.937	ENSMLUG00000007476	YBX3	100	91.450	Myotis_lucifugus
ENSCCAG00000016469	YBX3	79	84.848	ENSNGAG00000000710	Ybx3	91	82.895	Nannospalax_galili
ENSCCAG00000016469	YBX3	89	93.675	ENSNLEG00000034844	YBX3	91	94.044	Nomascus_leucogenys
ENSCCAG00000016469	YBX3	86	79.439	ENSODEG00000017957	YBX3	93	81.191	Octodon_degus
ENSCCAG00000016469	YBX3	79	86.780	ENSOCUG00000001889	YBX3	85	86.441	Oryctolagus_cuniculus
ENSCCAG00000016469	YBX3	100	89.182	ENSOGAG00000013245	YBX3	100	88.918	Otolemur_garnettii
ENSCCAG00000016469	YBX3	69	98.980	ENSOARG00000020919	YBX3	99	82.492	Ovis_aries
ENSCCAG00000016469	YBX3	100	90.591	ENSPPAG00000039068	YBX3	82	97.627	Pan_paniscus
ENSCCAG00000016469	YBX3	100	91.803	ENSPPRG00000005859	YBX3	100	93.443	Panthera_pardus
ENSCCAG00000016469	YBX3	77	92.632	ENSPTIG00000005322	YBX3	81	91.986	Panthera_tigris_altaica
ENSCCAG00000016469	YBX3	100	96.257	ENSPTRG00000004681	YBX3	100	96.257	Pan_troglodytes
ENSCCAG00000016469	YBX3	100	96.237	ENSPANG00000010280	YBX3	100	96.237	Papio_anubis
ENSCCAG00000016469	YBX3	57	99.038	ENSPSIG00000009247	YBX3	90	100.000	Pelodiscus_sinensis
ENSCCAG00000016469	YBX3	87	88.580	ENSPEMG00000012132	-	92	91.186	Peromyscus_maniculatus_bairdii
ENSCCAG00000016469	YBX3	82	88.710	ENSPEMG00000010391	-	85	91.593	Peromyscus_maniculatus_bairdii
ENSCCAG00000016469	YBX3	70	79.615	ENSPCIG00000029949	YBX3	100	77.692	Phascolarctos_cinereus
ENSCCAG00000016469	YBX3	100	96.237	ENSPPYG00000004279	YBX3	100	96.237	Pongo_abelii
ENSCCAG00000016469	YBX3	78	87.671	ENSPCAG00000001397	YBX3	98	89.199	Procavia_capensis
ENSCCAG00000016469	YBX3	50	70.732	ENSPCOG00000011663	YBX3	100	84.615	Propithecus_coquereli
ENSCCAG00000016469	YBX3	100	78.933	ENSPVAG00000006740	YBX3	77	91.379	Pteropus_vampyrus
ENSCCAG00000016469	YBX3	85	89.623	ENSRNOG00000005480	Ybx3	100	84.409	Rattus_norvegicus
ENSCCAG00000016469	YBX3	100	96.040	ENSRBIG00000039208	YBX3	100	96.040	Rhinopithecus_bieti
ENSCCAG00000016469	YBX3	100	96.370	ENSRROG00000029638	YBX3	100	96.370	Rhinopithecus_roxellana
ENSCCAG00000016469	YBX3	93	88.116	ENSSBOG00000030573	YBX3	86	97.595	Saimiri_boliviensis_boliviensis
ENSCCAG00000016469	YBX3	65	98.837	ENSSHAG00000003262	YBX3	98	79.381	Sarcophilus_harrisii
ENSCCAG00000016469	YBX3	100	88.189	ENSSSCG00000000633	YBX3	100	90.064	Sus_scrofa
ENSCCAG00000016469	YBX3	70	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSCCAG00000016469	YBX3	100	86.022	ENSTBEG00000012570	YBX3	81	94.198	Tupaia_belangeri
ENSCCAG00000016469	YBX3	71	84.586	ENSTTRG00000008045	YBX3	100	84.586	Tursiops_truncatus
ENSCCAG00000016469	YBX3	75	87.770	ENSUAMG00000016662	YBX3	100	88.129	Ursus_americanus
ENSCCAG00000016469	YBX3	77	91.228	ENSUMAG00000016118	YBX3	94	91.289	Ursus_maritimus
ENSCCAG00000016469	YBX3	57	100.000	ENSVPAG00000000876	YBX3	100	71.831	Vicugna_pacos
ENSCCAG00000016469	YBX3	75	87.770	ENSVVUG00000004956	YBX3	100	88.489	Vulpes_vulpes
ENSCCAG00000016469	YBX3	53	92.222	ENSXETG00000016239	ybx3	90	68.142	Xenopus_tropicalis