EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000019823 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: splicing factor 3B subunit 4 pseudogene
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 1281 bases
Position: chrKV389966.1:1120448-1121728
Accession: 108293552
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000004579	RRM_1	PF00076.22	5.1e-33	1	2
ENSCCAP00000004579	RRM_1	PF00076.22	5.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000021776	-	1266	-	ENSCCAP00000004579	421 (aa)	-	A0A2K5PLP2

Gene Model

Click here to download ENSCCAG00000019823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000019823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000019823	-	50	34.615	ENSCCAG00000023338	PABPC1L	59	35.000
ENSCCAG00000019823	-	58	33.918	ENSCCAG00000037208	PABPC3	56	33.918
ENSCCAG00000019823	-	59	32.000	ENSCCAG00000027395	-	55	32.331
ENSCCAG00000019823	-	55	36.527	ENSCCAG00000037733	-	69	36.527
ENSCCAG00000019823	-	72	85.902	ENSCCAG00000021751	-	67	86.901

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000019823	-	77	86.810	ENSG00000143368	SF3B4	100	92.105	Homo_sapiens
ENSCCAG00000019823	-	77	86.503	ENSAMEG00000010073	SF3B4	95	85.572	Ailuropoda_melanoleuca
ENSCCAG00000019823	-	55	80.603	ENSACIG00000018455	sf3b4	64	86.047	Amphilophus_citrinellus
ENSCCAG00000019823	-	57	87.083	ENSACAG00000010019	SF3B4	74	81.470	Anolis_carolinensis
ENSCCAG00000019823	-	77	86.810	ENSANAG00000031025	SF3B4	95	85.821	Aotus_nancymaae
ENSCCAG00000019823	-	51	85.981	ENSACLG00000014260	sf3b4	75	70.476	Astatotilapia_calliptera
ENSCCAG00000019823	-	77	86.503	ENSBTAG00000012495	SF3B4	95	85.572	Bos_taurus
ENSCCAG00000019823	-	71	90.572	ENSBTAG00000012793	-	76	90.291	Bos_taurus
ENSCCAG00000019823	-	71	71.552	ENSCJAG00000042351	SF3B4	98	70.871	Callithrix_jacchus
ENSCCAG00000019823	-	71	91.030	ENSCAFG00000011617	SF3B4	95	85.323	Canis_familiaris
ENSCCAG00000019823	-	71	91.030	ENSCAFG00020019775	SF3B4	95	85.323	Canis_lupus_dingo
ENSCCAG00000019823	-	87	60.904	ENSCHIG00000006654	-	73	69.103	Capra_hircus
ENSCCAG00000019823	-	77	86.503	ENSCHIG00000025663	-	95	85.572	Capra_hircus
ENSCCAG00000019823	-	77	86.810	ENSTSYG00000009295	SF3B4	95	85.821	Carlito_syrichta
ENSCCAG00000019823	-	78	68.693	ENSCAPG00000006451	SF3B4	83	66.667	Cavia_aperea
ENSCCAG00000019823	-	77	86.196	ENSCPOG00000008267	SF3B4	95	85.323	Cavia_porcellus
ENSCCAG00000019823	-	77	86.810	ENSCATG00000033114	SF3B4	95	85.821	Cercocebus_atys
ENSCCAG00000019823	-	77	86.196	ENSCLAG00000015851	SF3B4	95	85.323	Chinchilla_lanigera
ENSCCAG00000019823	-	77	86.810	ENSCSAG00000018129	SF3B4	95	85.821	Chlorocebus_sabaeus
ENSCCAG00000019823	-	94	74.687	ENSCPBG00000008041	SF3B4	74	82.484	Chrysemys_picta_bellii
ENSCCAG00000019823	-	77	86.810	ENSCANG00000035579	SF3B4	95	85.821	Colobus_angolensis_palliatus
ENSCCAG00000019823	-	77	86.196	ENSCGRG00001003590	Sf3b4	95	85.323	Cricetulus_griseus_chok1gshd
ENSCCAG00000019823	-	77	86.196	ENSCGRG00000016914	Sf3b4	95	85.323	Cricetulus_griseus_crigri
ENSCCAG00000019823	-	61	77.734	ENSCVAG00000005536	sf3b4	75	68.065	Cyprinodon_variegatus
ENSCCAG00000019823	-	95	71.429	ENSDNOG00000037231	-	76	73.354	Dasypus_novemcinctus
ENSCCAG00000019823	-	75	87.937	ENSDNOG00000048908	-	96	85.572	Dasypus_novemcinctus
ENSCCAG00000019823	-	77	86.503	ENSDORG00000016366	Sf3b4	95	85.572	Dipodomys_ordii
ENSCCAG00000019823	-	71	84.053	ENSETEG00000008963	SF3B4	74	84.026	Echinops_telfairi
ENSCCAG00000019823	-	77	86.503	ENSEASG00005001477	SF3B4	95	85.572	Equus_asinus_asinus
ENSCCAG00000019823	-	77	86.503	ENSECAG00000024737	SF3B4	95	85.572	Equus_caballus
ENSCCAG00000019823	-	77	86.503	ENSFCAG00000010106	SF3B4	95	85.572	Felis_catus
ENSCCAG00000019823	-	77	86.196	ENSFDAG00000009286	SF3B4	95	85.323	Fukomys_damarensis
ENSCCAG00000019823	-	91	73.057	ENSGALG00000013352	SF3B4	74	80.831	Gallus_gallus
ENSCCAG00000019823	-	57	83.058	ENSGAFG00000010181	sf3b4	74	70.915	Gambusia_affinis
ENSCCAG00000019823	-	94	74.687	ENSGAGG00000025055	SF3B4	65	82.484	Gopherus_agassizii
ENSCCAG00000019823	-	77	86.810	ENSGGOG00000004761	SF3B4	95	85.821	Gorilla_gorilla
ENSCCAG00000019823	-	72	69.055	ENSGGOG00000038845	-	75	68.454	Gorilla_gorilla
ENSCCAG00000019823	-	51	85.981	ENSHBUG00000002028	sf3b4	75	70.476	Haplochromis_burtoni
ENSCCAG00000019823	-	77	86.196	ENSHGLG00000012360	SF3B4	95	85.323	Heterocephalus_glaber_female
ENSCCAG00000019823	-	77	82.209	ENSHGLG00100008533	SF3B4	95	84.328	Heterocephalus_glaber_male
ENSCCAG00000019823	-	77	86.503	ENSSTOG00000000684	-	95	85.572	Ictidomys_tridecemlineatus
ENSCCAG00000019823	-	93	67.595	ENSSTOG00000029627	-	68	65.815	Ictidomys_tridecemlineatus
ENSCCAG00000019823	-	55	76.724	ENSJJAG00000022500	Sf3b4	97	77.049	Jaculus_jaculus
ENSCCAG00000019823	-	51	86.449	ENSKMAG00000008154	sf3b4	75	70.000	Kryptolebias_marmoratus
ENSCCAG00000019823	-	57	85.000	ENSLACG00000004436	SF3B4	87	75.862	Latimeria_chalumnae
ENSCCAG00000019823	-	50	88.038	ENSLOCG00000009048	sf3b4	72	76.699	Lepisosteus_oculatus
ENSCCAG00000019823	-	77	86.239	ENSLAFG00000008531	SF3B4	95	85.360	Loxodonta_africana
ENSCCAG00000019823	-	77	86.810	ENSMFAG00000042395	SF3B4	95	85.821	Macaca_fascicularis
ENSCCAG00000019823	-	90	63.708	ENSMFAG00000039067	-	78	65.300	Macaca_fascicularis
ENSCCAG00000019823	-	77	86.810	ENSMMUG00000007256	SF3B4	95	85.821	Macaca_mulatta
ENSCCAG00000019823	-	77	86.810	ENSMNEG00000031839	SF3B4	95	85.821	Macaca_nemestrina
ENSCCAG00000019823	-	90	63.185	ENSMNEG00000031526	-	78	64.984	Macaca_nemestrina
ENSCCAG00000019823	-	77	86.810	ENSMLEG00000038667	SF3B4	95	85.821	Mandrillus_leucophaeus
ENSCCAG00000019823	-	51	87.383	ENSMAMG00000014692	sf3b4	74	71.613	Mastacembelus_armatus
ENSCCAG00000019823	-	51	85.981	ENSMZEG00005026741	sf3b4	75	70.476	Maylandia_zebra
ENSCCAG00000019823	-	95	71.358	ENSMGAG00000000653	SF3B4	74	80.511	Meleagris_gallopavo
ENSCCAG00000019823	-	77	86.196	ENSMAUG00000015266	Sf3b4	95	85.323	Mesocricetus_auratus
ENSCCAG00000019823	-	77	86.503	ENSMICG00000044961	SF3B4	95	85.572	Microcebus_murinus
ENSCCAG00000019823	-	71	91.030	ENSMOCG00000013658	-	95	85.323	Microtus_ochrogaster
ENSCCAG00000019823	-	89	82.322	ENSMOCG00000014155	-	97	81.592	Microtus_ochrogaster
ENSCCAG00000019823	-	77	86.196	ENSMODG00000018767	SF3B4	95	84.826	Monodelphis_domestica
ENSCCAG00000019823	-	71	90.698	MGP_CAROLIEiJ_G0025365	Sf3b4	95	85.075	Mus_caroli
ENSCCAG00000019823	-	77	86.196	ENSMUSG00000068856	Sf3b4	95	85.323	Mus_musculus
ENSCCAG00000019823	-	77	86.196	MGP_PahariEiJ_G0026809	Sf3b4	95	85.323	Mus_pahari
ENSCCAG00000019823	-	77	86.196	MGP_SPRETEiJ_G0026309	Sf3b4	95	85.323	Mus_spretus
ENSCCAG00000019823	-	77	86.503	ENSMPUG00000005563	SF3B4	95	85.572	Mustela_putorius_furo
ENSCCAG00000019823	-	77	86.196	ENSMLUG00000010789	SF3B4	95	85.323	Myotis_lucifugus
ENSCCAG00000019823	-	77	86.196	ENSNGAG00000016337	Sf3b4	95	85.323	Nannospalax_galili
ENSCCAG00000019823	-	50	87.619	ENSNBRG00000013865	sf3b4	75	70.794	Neolamprologus_brichardi
ENSCCAG00000019823	-	95	69.327	ENSNLEG00000000537	-	78	77.419	Nomascus_leucogenys
ENSCCAG00000019823	-	54	90.385	ENSMEUG00000003272	SF3B4	64	90.000	Notamacropus_eugenii
ENSCCAG00000019823	-	71	88.040	ENSOPRG00000010808	SF3B4	74	87.859	Ochotona_princeps
ENSCCAG00000019823	-	86	66.022	ENSODEG00000008916	-	82	69.935	Octodon_degus
ENSCCAG00000019823	-	71	78.859	ENSODEG00000003597	-	78	77.918	Octodon_degus
ENSCCAG00000019823	-	51	85.514	ENSONIG00000002730	sf3b4	75	70.159	Oreochromis_niloticus
ENSCCAG00000019823	-	77	86.503	ENSOCUG00000004614	SF3B4	95	85.572	Oryctolagus_cuniculus
ENSCCAG00000019823	-	50	87.560	ENSORLG00000003062	sf3b4	81	66.764	Oryzias_latipes
ENSCCAG00000019823	-	50	87.560	ENSORLG00020000687	sf3b4	75	70.219	Oryzias_latipes_hni
ENSCCAG00000019823	-	50	87.560	ENSORLG00015010989	sf3b4	75	70.219	Oryzias_latipes_hsok
ENSCCAG00000019823	-	50	87.560	ENSOMEG00000013694	sf3b4	75	70.440	Oryzias_melastigma
ENSCCAG00000019823	-	77	86.503	ENSOGAG00000006265	SF3B4	95	85.572	Otolemur_garnettii
ENSCCAG00000019823	-	83	71.347	ENSOARG00000007368	-	76	75.633	Ovis_aries
ENSCCAG00000019823	-	77	86.503	ENSOARG00000020718	-	95	85.572	Ovis_aries
ENSCCAG00000019823	-	73	80.065	ENSPPAG00000030024	-	76	78.233	Pan_paniscus
ENSCCAG00000019823	-	77	86.810	ENSPPAG00000040904	SF3B4	95	85.821	Pan_paniscus
ENSCCAG00000019823	-	77	86.503	ENSPPRG00000007384	SF3B4	95	85.572	Panthera_pardus
ENSCCAG00000019823	-	71	91.362	ENSPTIG00000014530	SF3B4	95	85.323	Panthera_tigris_altaica
ENSCCAG00000019823	-	95	66.256	ENSPTRG00000049727	-	76	76.025	Pan_troglodytes
ENSCCAG00000019823	-	77	86.810	ENSPTRG00000001243	SF3B4	95	85.821	Pan_troglodytes
ENSCCAG00000019823	-	77	86.810	ENSPANG00000005126	SF3B4	95	85.821	Papio_anubis
ENSCCAG00000019823	-	50	88.095	ENSPKIG00000020669	sf3b4	80	71.519	Paramormyrops_kingsleyae
ENSCCAG00000019823	-	56	80.508	ENSPSIG00000009565	SF3B4	92	71.575	Pelodiscus_sinensis
ENSCCAG00000019823	-	77	86.196	ENSPEMG00000017568	Sf3b4	95	85.323	Peromyscus_maniculatus_bairdii
ENSCCAG00000019823	-	77	86.196	ENSPCIG00000008765	SF3B4	95	84.826	Phascolarctos_cinereus
ENSCCAG00000019823	-	59	80.000	ENSPFOG00000005754	sf3b4	74	70.874	Poecilia_formosa
ENSCCAG00000019823	-	59	80.000	ENSPLAG00000001401	sf3b4	82	70.064	Poecilia_latipinna
ENSCCAG00000019823	-	59	80.000	ENSPREG00000011076	sf3b4	77	67.178	Poecilia_reticulata
ENSCCAG00000019823	-	77	86.503	ENSPCOG00000015399	SF3B4	95	85.572	Propithecus_coquereli
ENSCCAG00000019823	-	77	86.503	ENSPVAG00000014171	SF3B4	95	85.572	Pteropus_vampyrus
ENSCCAG00000019823	-	51	85.981	ENSPNYG00000012700	sf3b4	75	70.476	Pundamilia_nyererei
ENSCCAG00000019823	-	77	86.196	ENSRNOG00000021181	Sf3b4	95	85.323	Rattus_norvegicus
ENSCCAG00000019823	-	77	86.810	ENSRBIG00000043392	SF3B4	95	85.821	Rhinopithecus_bieti
ENSCCAG00000019823	-	89	64.474	ENSRROG00000028213	-	80	69.453	Rhinopithecus_roxellana
ENSCCAG00000019823	-	77	86.810	ENSRROG00000029366	SF3B4	95	85.821	Rhinopithecus_roxellana
ENSCCAG00000019823	-	77	86.503	ENSSBOG00000012310	-	95	85.821	Saimiri_boliviensis_boliviensis
ENSCCAG00000019823	-	93	69.898	ENSSBOG00000025174	-	70	78.644	Saimiri_boliviensis_boliviensis
ENSCCAG00000019823	-	71	90.698	ENSSHAG00000004043	SF3B4	100	84.817	Sarcophilus_harrisii
ENSCCAG00000019823	-	50	88.095	ENSSFOG00015008864	sf3b4	72	72.258	Scleropages_formosus
ENSCCAG00000019823	-	63	85.909	ENSSPUG00000001028	SF3B4	72	69.401	Sphenodon_punctatus
ENSCCAG00000019823	-	74	57.188	ENSSSCG00000039440	-	76	59.621	Sus_scrofa
ENSCCAG00000019823	-	77	86.503	ENSSSCG00000006665	-	95	85.572	Sus_scrofa
ENSCCAG00000019823	-	50	87.678	ENSTGUG00000004470	SF3B4	85	87.037	Taeniopygia_guttata
ENSCCAG00000019823	-	77	86.503	ENSTTRG00000005217	SF3B4	95	85.572	Tursiops_truncatus
ENSCCAG00000019823	-	77	86.503	ENSUAMG00000022468	SF3B4	95	85.572	Ursus_americanus
ENSCCAG00000019823	-	71	91.362	ENSVPAG00000008152	SF3B4	97	85.572	Vicugna_pacos
ENSCCAG00000019823	-	57	88.750	ENSVVUG00000022697	-	53	89.020	Vulpes_vulpes
ENSCCAG00000019823	-	70	90.878	ENSVVUG00000007732	-	79	89.610	Vulpes_vulpes
ENSCCAG00000019823	-	54	81.057	ENSXETG00000011038	sf3b4	59	82.589	Xenopus_tropicalis