EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000019839 (Gene tree)
Gene ID: 108309995
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 77984 bases
Position: chrKV389525.1:4777081-4855064
Accession: 108309995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000004908	RNA_pol_Rpb1_5	PF04998.17	3.1e-103	1	1
ENSCCAP00000004932	RNA_pol_Rpb1_5	PF04998.17	7.3e-81	1	1
ENSCCAP00000004932	RNA_pol_Rpb1_4	PF05000.17	1.3e-25	1	1
ENSCCAP00000004908	RNA_pol_Rpb1_4	PF05000.17	1.3e-25	1	1
ENSCCAP00000004908	RNA_pol_Rpb1_2	PF00623.20	4.3e-70	1	1
ENSCCAP00000004932	RNA_pol_Rpb1_2	PF00623.20	4.3e-70	1	1
ENSCCAP00000004908	RNA_pol_Rpb1_3	PF04983.18	5.3e-36	1	1
ENSCCAP00000004932	RNA_pol_Rpb1_3	PF04983.18	5.4e-36	1	1
ENSCCAP00000004932	RNA_pol_Rpb1_1	PF04997.12	8.9e-22	1	1
ENSCCAP00000004908	RNA_pol_Rpb1_1	PF04997.12	1.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000022189	POLR1A-202	5154	-	ENSCCAP00000004932	1717 (aa)	-	A0A2K5PMS8
ENSCCAT00000022165	POLR1A-201	6585	XM_017536617	ENSCCAP00000004908	1720 (aa)	XP_017392106	A0A2K5PMN2

Gene Model

Click here to download ENSCCAG00000019839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000019839's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000019839	POLR1A	62	31.013	ENSCCAG00000032995	POLR3A	66	38.621

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000019839	POLR1A	100	94.884	ENSG00000068654	POLR1A	100	94.884	Homo_sapiens
ENSCCAG00000019839	POLR1A	69	67.508	ENSAPOG00000017945	polr1a	99	67.508	Acanthochromis_polyacanthus
ENSCCAG00000019839	POLR1A	100	89.709	ENSAMEG00000005807	POLR1A	100	91.393	Ailuropoda_melanoleuca
ENSCCAG00000019839	POLR1A	100	63.310	ENSACIG00000022147	polr1a	100	62.963	Amphilophus_citrinellus
ENSCCAG00000019839	POLR1A	100	65.875	ENSAOCG00000017336	polr1a	100	68.099	Amphiprion_ocellaris
ENSCCAG00000019839	POLR1A	95	75.000	ENSAPEG00000016105	polr1a	98	75.000	Amphiprion_percula
ENSCCAG00000019839	POLR1A	100	65.685	ENSATEG00000016773	polr1a	100	65.549	Anabas_testudineus
ENSCCAG00000019839	POLR1A	86	72.696	ENSAPLG00000013871	POLR1A	99	72.189	Anas_platyrhynchos
ENSCCAG00000019839	POLR1A	99	69.844	ENSACAG00000012141	POLR1A	99	68.797	Anolis_carolinensis
ENSCCAG00000019839	POLR1A	100	98.023	ENSANAG00000033927	POLR1A	100	98.023	Aotus_nancymaae
ENSCCAG00000019839	POLR1A	100	62.362	ENSACLG00000020541	polr1a	100	61.726	Astatotilapia_calliptera
ENSCCAG00000019839	POLR1A	100	89.076	ENSBTAG00000006481	POLR1A	100	89.076	Bos_taurus
ENSCCAG00000019839	POLR1A	99	38.994	WBGene00012999	rpoa-1	98	38.889	Caenorhabditis_elegans
ENSCCAG00000019839	POLR1A	100	97.674	ENSCJAG00000019547	POLR1A	100	97.674	Callithrix_jacchus
ENSCCAG00000019839	POLR1A	100	89.727	ENSCAFG00000007613	POLR1A	100	89.831	Canis_familiaris
ENSCCAG00000019839	POLR1A	100	89.525	ENSCAFG00020014752	POLR1A	100	89.629	Canis_lupus_dingo
ENSCCAG00000019839	POLR1A	100	86.964	ENSCHIG00000018204	POLR1A	99	88.091	Capra_hircus
ENSCCAG00000019839	POLR1A	100	89.076	ENSTSYG00000002761	POLR1A	100	88.727	Carlito_syrichta
ENSCCAG00000019839	POLR1A	97	83.840	ENSCAPG00000010132	POLR1A	100	83.453	Cavia_aperea
ENSCCAG00000019839	POLR1A	100	88.153	ENSCPOG00000012350	POLR1A	100	87.979	Cavia_porcellus
ENSCCAG00000019839	POLR1A	100	95.407	ENSCATG00000029786	POLR1A	100	95.407	Cercocebus_atys
ENSCCAG00000019839	POLR1A	100	88.464	ENSCLAG00000005187	POLR1A	100	87.942	Chinchilla_lanigera
ENSCCAG00000019839	POLR1A	100	95.407	ENSCSAG00000016251	POLR1A	100	95.407	Chlorocebus_sabaeus
ENSCCAG00000019839	POLR1A	99	74.087	ENSCPBG00000001115	POLR1A	99	73.511	Chrysemys_picta_bellii
ENSCCAG00000019839	POLR1A	99	46.754	ENSCSAVG00000007184	-	91	54.783	Ciona_savignyi
ENSCCAG00000019839	POLR1A	100	92.330	ENSCANG00000031785	POLR1A	100	92.330	Colobus_angolensis_palliatus
ENSCCAG00000019839	POLR1A	100	82.513	ENSCGRG00001006651	Polr1a	100	82.397	Cricetulus_griseus_chok1gshd
ENSCCAG00000019839	POLR1A	60	86.460	ENSCGRG00000010834	Polr1a	100	86.377	Cricetulus_griseus_crigri
ENSCCAG00000019839	POLR1A	100	61.601	ENSCSEG00000020190	polr1a	100	61.601	Cynoglossus_semilaevis
ENSCCAG00000019839	POLR1A	100	64.968	ENSCVAG00000020941	polr1a	100	64.910	Cyprinodon_variegatus
ENSCCAG00000019839	POLR1A	100	67.053	ENSDARG00000098375	polr1a	100	66.531	Danio_rerio
ENSCCAG00000019839	POLR1A	100	81.981	ENSDNOG00000010829	POLR1A	100	81.576	Dasypus_novemcinctus
ENSCCAG00000019839	POLR1A	100	87.341	ENSDORG00000008298	Polr1a	100	87.168	Dipodomys_ordii
ENSCCAG00000019839	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSCCAG00000019839	POLR1A	86	65.891	ENSEBUG00000005667	-	99	48.162	Eptatretus_burgeri
ENSCCAG00000019839	POLR1A	100	91.163	ENSEASG00005001625	POLR1A	100	91.163	Equus_asinus_asinus
ENSCCAG00000019839	POLR1A	100	91.047	ENSECAG00000010092	POLR1A	99	92.412	Equus_caballus
ENSCCAG00000019839	POLR1A	100	91.047	ENSECAG00000036306	-	99	92.412	Equus_caballus
ENSCCAG00000019839	POLR1A	100	91.047	ENSECAG00000030510	-	99	92.412	Equus_caballus
ENSCCAG00000019839	POLR1A	85	92.553	ENSEEUG00000000676	POLR1A	85	92.410	Erinaceus_europaeus
ENSCCAG00000019839	POLR1A	100	67.092	ENSELUG00000012769	polr1a	99	67.322	Esox_lucius
ENSCCAG00000019839	POLR1A	100	90.581	ENSFCAG00000008966	POLR1A	100	90.465	Felis_catus
ENSCCAG00000019839	POLR1A	99	70.809	ENSFALG00000010082	POLR1A	99	70.892	Ficedula_albicollis
ENSCCAG00000019839	POLR1A	100	88.502	ENSFDAG00000013726	POLR1A	100	87.689	Fukomys_damarensis
ENSCCAG00000019839	POLR1A	100	61.753	ENSFHEG00000005996	polr1a	100	61.632	Fundulus_heteroclitus
ENSCCAG00000019839	POLR1A	100	60.116	ENSGMOG00000002230	polr1a	100	59.965	Gadus_morhua
ENSCCAG00000019839	POLR1A	90	69.300	ENSGALG00000038160	-	99	69.300	Gallus_gallus
ENSCCAG00000019839	POLR1A	100	64.910	ENSGAFG00000015266	polr1a	100	64.890	Gambusia_affinis
ENSCCAG00000019839	POLR1A	100	64.487	ENSGACG00000018791	polr1a	100	64.085	Gasterosteus_aculeatus
ENSCCAG00000019839	POLR1A	89	74.984	ENSGAGG00000004984	-	96	80.405	Gopherus_agassizii
ENSCCAG00000019839	POLR1A	100	94.942	ENSGGOG00000001788	POLR1A	100	94.942	Gorilla_gorilla
ENSCCAG00000019839	POLR1A	90	64.019	ENSHBUG00000020021	polr1a	99	64.217	Haplochromis_burtoni
ENSCCAG00000019839	POLR1A	100	87.863	ENSHGLG00000006334	POLR1A	100	87.689	Heterocephalus_glaber_female
ENSCCAG00000019839	POLR1A	100	87.609	ENSHGLG00100006614	POLR1A	100	87.435	Heterocephalus_glaber_male
ENSCCAG00000019839	POLR1A	100	62.572	ENSHCOG00000003345	polr1a	100	62.017	Hippocampus_comes
ENSCCAG00000019839	POLR1A	100	66.087	ENSIPUG00000013174	polr1a	100	65.471	Ictalurus_punctatus
ENSCCAG00000019839	POLR1A	99	86.387	ENSSTOG00000012580	POLR1A	99	86.105	Ictidomys_tridecemlineatus
ENSCCAG00000019839	POLR1A	100	86.841	ENSJJAG00000013113	Polr1a	100	86.667	Jaculus_jaculus
ENSCCAG00000019839	POLR1A	100	66.028	ENSKMAG00000007399	polr1a	100	65.563	Kryptolebias_marmoratus
ENSCCAG00000019839	POLR1A	95	68.017	ENSLBEG00000015401	polr1a	99	67.390	Labrus_bergylta
ENSCCAG00000019839	POLR1A	53	76.496	ENSLACG00000003218	polr1a	100	76.496	Latimeria_chalumnae
ENSCCAG00000019839	POLR1A	100	70.694	ENSLOCG00000010881	polr1a	100	70.023	Lepisosteus_oculatus
ENSCCAG00000019839	POLR1A	100	89.005	ENSLAFG00000014948	POLR1A	100	89.120	Loxodonta_africana
ENSCCAG00000019839	POLR1A	100	95.465	ENSMFAG00000046097	POLR1A	100	95.465	Macaca_fascicularis
ENSCCAG00000019839	POLR1A	100	95.349	ENSMMUG00000015815	POLR1A	100	95.349	Macaca_mulatta
ENSCCAG00000019839	POLR1A	100	95.407	ENSMNEG00000043313	POLR1A	100	95.407	Macaca_nemestrina
ENSCCAG00000019839	POLR1A	100	94.709	ENSMLEG00000042428	POLR1A	100	94.709	Mandrillus_leucophaeus
ENSCCAG00000019839	POLR1A	100	66.222	ENSMAMG00000016565	polr1a	100	65.525	Mastacembelus_armatus
ENSCCAG00000019839	POLR1A	100	65.721	ENSMZEG00005004915	polr1a	100	65.356	Maylandia_zebra
ENSCCAG00000019839	POLR1A	99	68.870	ENSMGAG00000013111	POLR1A	99	69.101	Meleagris_gallopavo
ENSCCAG00000019839	POLR1A	92	87.050	ENSMAUG00000008497	Polr1a	100	86.860	Mesocricetus_auratus
ENSCCAG00000019839	POLR1A	100	91.865	ENSMICG00000000757	POLR1A	100	91.575	Microcebus_murinus
ENSCCAG00000019839	POLR1A	100	86.740	ENSMOCG00000000122	Polr1a	100	86.624	Microtus_ochrogaster
ENSCCAG00000019839	POLR1A	100	65.797	ENSMMOG00000010216	polr1a	100	65.661	Mola_mola
ENSCCAG00000019839	POLR1A	100	74.770	ENSMODG00000009335	POLR1A	100	74.396	Monodelphis_domestica
ENSCCAG00000019839	POLR1A	100	65.429	ENSMALG00000013363	polr1a	100	65.414	Monopterus_albus
ENSCCAG00000019839	POLR1A	100	85.814	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.408	Mus_caroli
ENSCCAG00000019839	POLR1A	100	86.161	ENSMUSG00000049553	Polr1a	100	85.756	Mus_musculus
ENSCCAG00000019839	POLR1A	100	86.219	MGP_PahariEiJ_G0022230	Polr1a	100	85.871	Mus_pahari
ENSCCAG00000019839	POLR1A	100	84.348	MGP_SPRETEiJ_G0029499	Polr1a	100	84.475	Mus_spretus
ENSCCAG00000019839	POLR1A	100	89.942	ENSMPUG00000009135	POLR1A	100	89.767	Mustela_putorius_furo
ENSCCAG00000019839	POLR1A	100	88.850	ENSMLUG00000015723	POLR1A	100	88.504	Myotis_lucifugus
ENSCCAG00000019839	POLR1A	100	86.921	ENSNGAG00000017907	Polr1a	100	86.863	Nannospalax_galili
ENSCCAG00000019839	POLR1A	100	65.663	ENSNBRG00000000519	polr1a	100	65.491	Neolamprologus_brichardi
ENSCCAG00000019839	POLR1A	100	92.824	ENSNLEG00000002264	POLR1A	100	92.824	Nomascus_leucogenys
ENSCCAG00000019839	POLR1A	75	93.701	ENSMEUG00000011665	-	76	93.701	Notamacropus_eugenii
ENSCCAG00000019839	POLR1A	99	82.038	ENSOPRG00000008269	POLR1A	100	81.952	Ochotona_princeps
ENSCCAG00000019839	POLR1A	100	88.560	ENSODEG00000003542	POLR1A	100	88.037	Octodon_degus
ENSCCAG00000019839	POLR1A	100	65.895	ENSONIG00000015895	polr1a	100	65.972	Oreochromis_niloticus
ENSCCAG00000019839	POLR1A	100	90.180	ENSOCUG00000010138	POLR1A	100	90.180	Oryctolagus_cuniculus
ENSCCAG00000019839	POLR1A	100	65.104	ENSORLG00000008753	polr1a	99	64.563	Oryzias_latipes
ENSCCAG00000019839	POLR1A	100	63.984	ENSORLG00020020726	polr1a	99	63.441	Oryzias_latipes_hni
ENSCCAG00000019839	POLR1A	96	76.596	ENSORLG00015016071	polr1a	99	76.667	Oryzias_latipes_hsok
ENSCCAG00000019839	POLR1A	100	90.523	ENSOGAG00000004031	POLR1A	100	90.523	Otolemur_garnettii
ENSCCAG00000019839	POLR1A	100	88.508	ENSOARG00000020601	POLR1A	100	88.392	Ovis_aries
ENSCCAG00000019839	POLR1A	100	94.826	ENSPPAG00000042450	POLR1A	100	94.826	Pan_paniscus
ENSCCAG00000019839	POLR1A	100	90.814	ENSPPRG00000006702	POLR1A	100	90.465	Panthera_pardus
ENSCCAG00000019839	POLR1A	100	90.035	ENSPTIG00000018783	POLR1A	100	89.919	Panthera_tigris_altaica
ENSCCAG00000019839	POLR1A	100	94.884	ENSPTRG00000012147	POLR1A	100	94.884	Pan_troglodytes
ENSCCAG00000019839	POLR1A	100	95.291	ENSPANG00000025908	POLR1A	100	95.291	Papio_anubis
ENSCCAG00000019839	POLR1A	94	77.778	ENSPKIG00000005468	polr1a	99	77.778	Paramormyrops_kingsleyae
ENSCCAG00000019839	POLR1A	63	70.417	ENSPSIG00000009321	-	99	69.954	Pelodiscus_sinensis
ENSCCAG00000019839	POLR1A	54	68.235	ENSPMGG00000009718	polr1a	95	68.235	Periophthalmus_magnuspinnatus
ENSCCAG00000019839	POLR1A	100	87.276	ENSPEMG00000022224	Polr1a	100	87.435	Peromyscus_maniculatus_bairdii
ENSCCAG00000019839	POLR1A	95	78.736	ENSPCIG00000004222	POLR1A	99	78.419	Phascolarctos_cinereus
ENSCCAG00000019839	POLR1A	100	65.394	ENSPFOG00000005025	polr1a	100	65.258	Poecilia_formosa
ENSCCAG00000019839	POLR1A	100	65.507	ENSPLAG00000021389	polr1a	100	65.449	Poecilia_latipinna
ENSCCAG00000019839	POLR1A	100	63.673	ENSPMEG00000006463	polr1a	100	63.984	Poecilia_mexicana
ENSCCAG00000019839	POLR1A	100	65.451	ENSPREG00000002389	polr1a	100	64.815	Poecilia_reticulata
ENSCCAG00000019839	POLR1A	100	94.302	ENSPPYG00000012217	POLR1A	100	94.302	Pongo_abelii
ENSCCAG00000019839	POLR1A	92	96.000	ENSPCAG00000011582	POLR1A	92	96.000	Procavia_capensis
ENSCCAG00000019839	POLR1A	100	91.458	ENSPCOG00000026987	POLR1A	100	91.226	Propithecus_coquereli
ENSCCAG00000019839	POLR1A	95	90.074	ENSPVAG00000012674	POLR1A	95	89.399	Pteropus_vampyrus
ENSCCAG00000019839	POLR1A	100	65.721	ENSPNYG00000000026	polr1a	100	65.220	Pundamilia_nyererei
ENSCCAG00000019839	POLR1A	100	67.014	ENSPNAG00000019223	polr1a	99	68.626	Pygocentrus_nattereri
ENSCCAG00000019839	POLR1A	100	87.261	ENSRNOG00000009545	Polr1a	100	87.087	Rattus_norvegicus
ENSCCAG00000019839	POLR1A	100	94.709	ENSRBIG00000028335	POLR1A	100	94.709	Rhinopithecus_bieti
ENSCCAG00000019839	POLR1A	100	94.651	ENSRROG00000031473	POLR1A	100	94.651	Rhinopithecus_roxellana
ENSCCAG00000019839	POLR1A	99	36.624	YOR341W	RPA190	99	36.577	Saccharomyces_cerevisiae
ENSCCAG00000019839	POLR1A	100	97.907	ENSSBOG00000030262	POLR1A	100	97.907	Saimiri_boliviensis_boliviensis
ENSCCAG00000019839	POLR1A	100	73.199	ENSSHAG00000014739	POLR1A	100	73.199	Sarcophilus_harrisii
ENSCCAG00000019839	POLR1A	100	67.673	ENSSFOG00015019716	polr1a	100	67.480	Scleropages_formosus
ENSCCAG00000019839	POLR1A	100	66.030	ENSSMAG00000014342	polr1a	100	65.373	Scophthalmus_maximus
ENSCCAG00000019839	POLR1A	100	66.647	ENSSDUG00000014631	polr1a	100	66.532	Seriola_dumerili
ENSCCAG00000019839	POLR1A	100	64.852	ENSSLDG00000024095	polr1a	100	64.447	Seriola_lalandi_dorsalis
ENSCCAG00000019839	POLR1A	75	95.745	ENSSARG00000003136	-	76	95.745	Sorex_araneus
ENSCCAG00000019839	POLR1A	94	77.949	ENSSPUG00000004215	POLR1A	98	77.949	Sphenodon_punctatus
ENSCCAG00000019839	POLR1A	63	71.429	ENSSPAG00000016341	polr1a	94	71.429	Stegastes_partitus
ENSCCAG00000019839	POLR1A	83	89.979	ENSSSCG00000008226	POLR1A	99	89.951	Sus_scrofa
ENSCCAG00000019839	POLR1A	99	70.370	ENSTGUG00000010704	POLR1A	100	70.253	Taeniopygia_guttata
ENSCCAG00000019839	POLR1A	100	63.116	ENSTRUG00000002210	polr1a	99	63.511	Takifugu_rubripes
ENSCCAG00000019839	POLR1A	100	60.322	ENSTNIG00000010116	polr1a	100	60.265	Tetraodon_nigroviridis
ENSCCAG00000019839	POLR1A	74	95.575	ENSTBEG00000008646	POLR1A	74	95.575	Tupaia_belangeri
ENSCCAG00000019839	POLR1A	100	85.357	ENSTTRG00000008597	POLR1A	100	85.474	Tursiops_truncatus
ENSCCAG00000019839	POLR1A	69	90.533	ENSUAMG00000012158	-	94	89.941	Ursus_americanus
ENSCCAG00000019839	POLR1A	100	89.070	ENSUMAG00000006700	POLR1A	100	88.895	Ursus_maritimus
ENSCCAG00000019839	POLR1A	100	89.553	ENSVVUG00000001245	POLR1A	100	89.657	Vulpes_vulpes
ENSCCAG00000019839	POLR1A	100	68.190	ENSXETG00000001952	polr1a	100	69.328	Xenopus_tropicalis
ENSCCAG00000019839	POLR1A	100	65.567	ENSXMAG00000004032	polr1a	100	65.278	Xiphophorus_maculatus