EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000021964 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 19253 bases
Position: chrKV389871.1:88443-107695
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000008476	Smg4_UPF3	PF03467.15	2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000025854	-	819	-	ENSCCAP00000008476	272 (aa)	-	A0A2K5PXZ6

Gene Model

Click here to download ENSCCAG00000021964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000021964's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000021964	-	95	50.859	ENSCCAG00000029813	-	97	52.297

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000021964	-	100	76.056	ENSG00000125351	UPF3B	96	55.814	Homo_sapiens
ENSCCAG00000021964	-	100	74.648	ENSAMEG00000000163	UPF3B	71	74.648	Ailuropoda_melanoleuca
ENSCCAG00000021964	-	82	45.276	ENSACIG00000013582	upf3b	55	46.245	Amphilophus_citrinellus
ENSCCAG00000021964	-	60	45.641	ENSATEG00000018742	upf3b	55	50.781	Anabas_testudineus
ENSCCAG00000021964	-	100	76.056	ENSANAG00000025598	-	100	57.187	Aotus_nancymaae
ENSCCAG00000021964	-	100	77.465	ENSANAG00000021894	-	100	70.769	Aotus_nancymaae
ENSCCAG00000021964	-	88	51.228	ENSANAG00000033169	-	100	49.474	Aotus_nancymaae
ENSCCAG00000021964	-	82	50.391	ENSACLG00000001649	upf3b	56	50.391	Astatotilapia_calliptera
ENSCCAG00000021964	-	67	61.780	ENSAMXG00000000199	upf3b	62	51.832	Astyanax_mexicanus
ENSCCAG00000021964	-	96	68.471	ENSBTAG00000035615	UPF3B	100	68.471	Bos_taurus
ENSCCAG00000021964	-	100	77.465	ENSCJAG00000004975	UPF3B	100	70.462	Callithrix_jacchus
ENSCCAG00000021964	-	100	74.648	ENSCAFG00000018426	UPF3B	70	74.648	Canis_familiaris
ENSCCAG00000021964	-	100	74.648	ENSCAFG00020004074	UPF3B	72	74.648	Canis_lupus_dingo
ENSCCAG00000021964	-	100	73.239	ENSCHIG00000000247	-	70	73.239	Capra_hircus
ENSCCAG00000021964	-	96	68.333	ENSCHIG00000018011	-	100	68.153	Capra_hircus
ENSCCAG00000021964	-	100	76.056	ENSTSYG00000014690	UPF3B	100	68.675	Carlito_syrichta
ENSCCAG00000021964	-	100	76.056	ENSCATG00000017506	UPF3B	100	70.462	Cercocebus_atys
ENSCCAG00000021964	-	100	78.333	ENSCLAG00000003260	UPF3B	71	70.423	Chinchilla_lanigera
ENSCCAG00000021964	-	100	76.056	ENSCSAG00000018348	UPF3B	70	76.056	Chlorocebus_sabaeus
ENSCCAG00000021964	-	100	70.462	ENSCANG00000029220	UPF3B	100	70.462	Colobus_angolensis_palliatus
ENSCCAG00000021964	-	100	61.594	ENSCGRG00001006858	-	71	67.606	Cricetulus_griseus_chok1gshd
ENSCCAG00000021964	-	82	57.143	ENSCGRG00001013643	-	73	53.846	Cricetulus_griseus_chok1gshd
ENSCCAG00000021964	-	73	89.542	ENSCGRG00000007627	Upf3b	52	89.542	Cricetulus_griseus_crigri
ENSCCAG00000021964	-	82	49.219	ENSCSEG00000002046	upf3b	54	49.219	Cynoglossus_semilaevis
ENSCCAG00000021964	-	100	69.014	ENSDNOG00000008665	UPF3B	70	69.014	Dasypus_novemcinctus
ENSCCAG00000021964	-	100	73.016	ENSDORG00000006077	Upf3b	72	69.014	Dipodomys_ordii
ENSCCAG00000021964	-	99	72.857	ENSEASG00005012919	UPF3B	71	72.857	Equus_asinus_asinus
ENSCCAG00000021964	-	99	72.857	ENSECAG00000016947	UPF3B	71	72.857	Equus_caballus
ENSCCAG00000021964	-	100	71.831	ENSFCAG00000004388	UPF3B	71	71.831	Felis_catus
ENSCCAG00000021964	-	100	73.239	ENSFDAG00000018869	UPF3B	71	73.239	Fukomys_damarensis
ENSCCAG00000021964	-	88	52.015	ENSGACG00000017435	upf3b	100	52.015	Gasterosteus_aculeatus
ENSCCAG00000021964	-	100	76.056	ENSGGOG00000023995	UPF3B	100	70.462	Gorilla_gorilla
ENSCCAG00000021964	-	82	50.391	ENSHBUG00000017393	upf3b	56	50.391	Haplochromis_burtoni
ENSCCAG00000021964	-	100	74.648	ENSHGLG00000019582	-	71	74.648	Heterocephalus_glaber_female
ENSCCAG00000021964	-	82	57.971	ENSHGLG00000011189	-	64	57.971	Heterocephalus_glaber_female
ENSCCAG00000021964	-	100	74.648	ENSHGLG00100002042	-	73	74.648	Heterocephalus_glaber_male
ENSCCAG00000021964	-	82	57.971	ENSHGLG00100001889	-	65	57.971	Heterocephalus_glaber_male
ENSCCAG00000021964	-	100	78.333	ENSSTOG00000001101	UPF3B	71	70.423	Ictidomys_tridecemlineatus
ENSCCAG00000021964	-	100	71.831	ENSJJAG00000000053	Upf3b	71	71.831	Jaculus_jaculus
ENSCCAG00000021964	-	100	67.606	ENSLAFG00000001267	UPF3B	75	67.606	Loxodonta_africana
ENSCCAG00000021964	-	63	50.000	ENSMFAG00000045275	-	94	48.259	Macaca_fascicularis
ENSCCAG00000021964	-	100	76.056	ENSMFAG00000045414	UPF3B	100	70.462	Macaca_fascicularis
ENSCCAG00000021964	-	100	76.056	ENSMMUG00000020222	UPF3B	100	70.462	Macaca_mulatta
ENSCCAG00000021964	-	63	53.846	ENSMMUG00000046682	-	94	52.151	Macaca_mulatta
ENSCCAG00000021964	-	100	76.056	ENSMNEG00000039794	UPF3B	100	70.462	Macaca_nemestrina
ENSCCAG00000021964	-	63	49.524	ENSMNEG00000040898	-	94	47.761	Macaca_nemestrina
ENSCCAG00000021964	-	100	76.056	ENSMLEG00000010999	UPF3B	100	70.462	Mandrillus_leucophaeus
ENSCCAG00000021964	-	82	50.391	ENSMZEG00005007871	upf3b	56	50.391	Maylandia_zebra
ENSCCAG00000021964	-	71	79.355	ENSMGAG00000007728	UPF3B	53	79.355	Meleagris_gallopavo
ENSCCAG00000021964	-	100	59.420	ENSMAUG00000008705	Upf3b	71	71.831	Mesocricetus_auratus
ENSCCAG00000021964	-	100	69.018	ENSMICG00000001743	UPF3B	100	69.018	Microcebus_murinus
ENSCCAG00000021964	-	100	68.056	ENSMOCG00000017893	Upf3b	70	68.056	Microtus_ochrogaster
ENSCCAG00000021964	-	82	50.781	ENSMALG00000008042	upf3b	55	50.781	Monopterus_albus
ENSCCAG00000021964	-	100	66.667	MGP_CAROLIEiJ_G0032999	Upf3b	56	94.444	Mus_caroli
ENSCCAG00000021964	-	100	66.667	ENSMUSG00000036572	Upf3b	55	94.444	Mus_musculus
ENSCCAG00000021964	-	100	65.278	MGP_PahariEiJ_G0031543	Upf3b	56	94.444	Mus_pahari
ENSCCAG00000021964	-	100	66.667	MGP_SPRETEiJ_G0034152	Upf3b	56	94.444	Mus_spretus
ENSCCAG00000021964	-	96	69.492	ENSMPUG00000001531	UPF3B	71	70.000	Mustela_putorius_furo
ENSCCAG00000021964	-	100	72.222	ENSMLUG00000010821	UPF3B	72	72.222	Myotis_lucifugus
ENSCCAG00000021964	-	100	69.444	ENSNGAG00000008231	Upf3b	71	69.444	Nannospalax_galili
ENSCCAG00000021964	-	63	54.315	ENSNLEG00000027516	-	94	52.660	Nomascus_leucogenys
ENSCCAG00000021964	-	73	96.078	ENSNLEG00000014897	UPF3B	71	76.056	Nomascus_leucogenys
ENSCCAG00000021964	-	65	48.684	ENSODEG00000007164	-	90	44.076	Octodon_degus
ENSCCAG00000021964	-	63	51.269	ENSODEG00000000596	-	95	49.735	Octodon_degus
ENSCCAG00000021964	-	63	54.271	ENSODEG00000006064	-	94	54.839	Octodon_degus
ENSCCAG00000021964	-	100	91.837	ENSODEG00000002186	-	74	91.837	Octodon_degus
ENSCCAG00000021964	-	100	52.000	ENSONIG00000002536	upf3b	66	52.000	Oreochromis_niloticus
ENSCCAG00000021964	-	100	73.239	ENSOCUG00000010213	UPF3B	70	73.239	Oryctolagus_cuniculus
ENSCCAG00000021964	-	61	54.335	ENSORLG00020003758	upf3b	56	53.757	Oryzias_latipes_hni
ENSCCAG00000021964	-	100	73.239	ENSOGAG00000004643	-	71	73.239	Otolemur_garnettii
ENSCCAG00000021964	-	96	73.684	ENSOGAG00000033003	-	67	73.684	Otolemur_garnettii
ENSCCAG00000021964	-	86	80.851	ENSOARG00000007869	-	56	80.851	Ovis_aries
ENSCCAG00000021964	-	100	73.239	ENSOARG00000016051	-	70	73.239	Ovis_aries
ENSCCAG00000021964	-	100	76.056	ENSPPAG00000040390	UPF3B	100	70.462	Pan_paniscus
ENSCCAG00000021964	-	100	71.831	ENSPPRG00000023536	UPF3B	71	71.831	Panthera_pardus
ENSCCAG00000021964	-	100	71.831	ENSPTIG00000015264	UPF3B	100	68.923	Panthera_tigris_altaica
ENSCCAG00000021964	-	100	76.056	ENSPTRG00000022228	UPF3B	100	70.462	Pan_troglodytes
ENSCCAG00000021964	-	100	76.056	ENSPANG00000000900	UPF3B	100	70.462	Papio_anubis
ENSCCAG00000021964	-	63	51.196	ENSPANG00000029350	-	93	50.259	Papio_anubis
ENSCCAG00000021964	-	55	80.000	ENSPSIG00000005833	UPF3B	55	80.000	Pelodiscus_sinensis
ENSCCAG00000021964	-	56	69.427	ENSPMGG00000016067	upf3b	57	69.427	Periophthalmus_magnuspinnatus
ENSCCAG00000021964	-	100	66.197	ENSPEMG00000012352	Upf3b	71	66.197	Peromyscus_maniculatus_bairdii
ENSCCAG00000021964	-	86	45.596	ENSPLAG00000019922	upf3b	57	49.805	Poecilia_latipinna
ENSCCAG00000021964	-	86	45.596	ENSPLAG00000005105	upf3b	59	49.434	Poecilia_latipinna
ENSCCAG00000021964	-	86	45.596	ENSPMEG00000023532	upf3b	57	49.805	Poecilia_mexicana
ENSCCAG00000021964	-	100	67.456	ENSPPYG00000020675	-	100	67.456	Pongo_abelii
ENSCCAG00000021964	-	100	68.056	ENSPCAG00000009464	UPF3B	70	68.056	Procavia_capensis
ENSCCAG00000021964	-	100	74.648	ENSPCOG00000021960	UPF3B	100	69.632	Propithecus_coquereli
ENSCCAG00000021964	-	100	87.755	ENSPVAG00000014075	UPF3B	66	87.755	Pteropus_vampyrus
ENSCCAG00000021964	-	82	50.391	ENSPNYG00000009846	upf3b	56	50.391	Pundamilia_nyererei
ENSCCAG00000021964	-	73	63.107	ENSPNAG00000021528	upf3b	62	65.789	Pygocentrus_nattereri
ENSCCAG00000021964	-	100	68.056	ENSRNOG00000039994	Upf3b	71	68.056	Rattus_norvegicus
ENSCCAG00000021964	-	73	96.078	ENSRBIG00000037219	UPF3B	57	96.078	Rhinopithecus_bieti
ENSCCAG00000021964	-	100	76.056	ENSRROG00000041031	UPF3B	100	70.462	Rhinopithecus_roxellana
ENSCCAG00000021964	-	100	77.465	ENSSBOG00000019740	UPF3B	100	71.385	Saimiri_boliviensis_boliviensis
ENSCCAG00000021964	-	69	80.645	ENSSHAG00000008634	UPF3B	67	58.000	Sarcophilus_harrisii
ENSCCAG00000021964	-	88	53.137	ENSSMAG00000012913	upf3b	89	53.137	Scophthalmus_maximus
ENSCCAG00000021964	-	73	92.086	ENSSARG00000004147	UPF3B	51	90.196	Sorex_araneus
ENSCCAG00000021964	-	99	53.521	ENSSPUG00000013082	UPF3B	71	53.521	Sphenodon_punctatus
ENSCCAG00000021964	-	82	50.391	ENSSPAG00000009989	upf3b	56	50.391	Stegastes_partitus
ENSCCAG00000021964	-	100	71.831	ENSSSCG00000012617	UPF3B	71	71.831	Sus_scrofa
ENSCCAG00000021964	-	100	70.423	ENSTBEG00000003229	UPF3B	70	70.423	Tupaia_belangeri
ENSCCAG00000021964	-	100	74.648	ENSUAMG00000024565	UPF3B	71	74.648	Ursus_americanus
ENSCCAG00000021964	-	73	94.771	ENSVPAG00000009971	UPF3B	54	94.771	Vicugna_pacos
ENSCCAG00000021964	-	100	73.239	ENSVVUG00000011594	UPF3B	97	56.279	Vulpes_vulpes
ENSCCAG00000021964	-	86	45.078	ENSXCOG00000016586	upf3b	97	42.157	Xiphophorus_couchianus