EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000022132 (Gene tree)
Gene ID: 108285427
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 19213 bases
Position: chrKV389723.1:869226-888438
Accession: 108285427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000008766	HVSL	PF09749.9	2.7e-63	1	1
ENSCCAP00000008774	HVSL	PF09749.9	1.5e-51	1	2
ENSCCAP00000008774	HVSL	PF09749.9	1.5e-51	2	2
ENSCCAP00000008778	HVSL	PF09749.9	8.4e-29	1	1
ENSCCAP00000008779	HVSL	PF09749.9	9e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000026148	USB1-201	3685	XM_017502631	ENSCCAP00000008766	265 (aa)	XP_017358120	A0A2K5PYS5
ENSCCAT00000026155	USB1-202	744	-	ENSCCAP00000008774	247 (aa)	-	A0A2K5PYQ8
ENSCCAT00000026160	USB1-204	537	-	ENSCCAP00000008779	179 (aa)	-	A0A2K5PYR4
ENSCCAT00000026159	USB1-203	480	-	ENSCCAP00000008778	159 (aa)	-	A0A2K5PYN5

Gene Model

Click here to download ENSCCAG00000022132's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000022132's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000022132	USB1	100	96.226	ENSG00000103005	USB1	100	96.262	Homo_sapiens
ENSCCAG00000022132	USB1	98	46.360	ENSAPOG00000011942	usb1	81	51.982	Acanthochromis_polyacanthus
ENSCCAG00000022132	USB1	100	82.900	ENSAMEG00000017205	USB1	100	82.528	Ailuropoda_melanoleuca
ENSCCAG00000022132	USB1	85	53.571	ENSACIG00000012234	usb1	82	53.571	Amphilophus_citrinellus
ENSCCAG00000022132	USB1	95	50.199	ENSAOCG00000014831	usb1	80	53.744	Amphiprion_ocellaris
ENSCCAG00000022132	USB1	95	50.598	ENSAPEG00000000296	usb1	80	54.185	Amphiprion_percula
ENSCCAG00000022132	USB1	99	48.289	ENSATEG00000009348	usb1	82	51.948	Anabas_testudineus
ENSCCAG00000022132	USB1	85	70.044	ENSAPLG00000002756	USB1	100	69.912	Anas_platyrhynchos
ENSCCAG00000022132	USB1	86	63.755	ENSACAG00000015481	USB1	100	63.755	Anolis_carolinensis
ENSCCAG00000022132	USB1	100	98.113	ENSANAG00000035640	USB1	100	98.113	Aotus_nancymaae
ENSCCAG00000022132	USB1	94	49.799	ENSACLG00000020586	usb1	80	52.655	Astatotilapia_calliptera
ENSCCAG00000022132	USB1	84	51.570	ENSAMXG00000040146	usb1	74	51.570	Astyanax_mexicanus
ENSCCAG00000022132	USB1	100	84.151	ENSBTAG00000015758	USB1	100	84.151	Bos_taurus
ENSCCAG00000022132	USB1	100	98.113	ENSCJAG00000011733	USB1	100	98.113	Callithrix_jacchus
ENSCCAG00000022132	USB1	99	80.882	ENSCAFG00000008556	USB1	73	79.412	Canis_familiaris
ENSCCAG00000022132	USB1	99	80.586	ENSCAFG00020009263	USB1	99	79.487	Canis_lupus_dingo
ENSCCAG00000022132	USB1	100	83.019	ENSCHIG00000024290	USB1	100	83.019	Capra_hircus
ENSCCAG00000022132	USB1	100	89.811	ENSTSYG00000006997	USB1	100	89.811	Carlito_syrichta
ENSCCAG00000022132	USB1	79	80.800	ENSCAPG00000009057	USB1	100	72.430	Cavia_aperea
ENSCCAG00000022132	USB1	100	81.716	ENSCPOG00000014325	USB1	100	81.716	Cavia_porcellus
ENSCCAG00000022132	USB1	100	95.094	ENSCATG00000032174	USB1	100	95.094	Cercocebus_atys
ENSCCAG00000022132	USB1	66	86.932	ENSCLAG00000007363	USB1	100	86.932	Chinchilla_lanigera
ENSCCAG00000022132	USB1	100	95.849	ENSCSAG00000004783	USB1	100	95.849	Chlorocebus_sabaeus
ENSCCAG00000022132	USB1	92	64.898	ENSCPBG00000026943	USB1	85	65.833	Chrysemys_picta_bellii
ENSCCAG00000022132	USB1	83	30.702	ENSCSAVG00000000894	-	82	30.702	Ciona_savignyi
ENSCCAG00000022132	USB1	100	95.094	ENSCANG00000037135	USB1	100	95.094	Colobus_angolensis_palliatus
ENSCCAG00000022132	USB1	100	85.075	ENSCGRG00001011243	USB1	100	84.701	Cricetulus_griseus_chok1gshd
ENSCCAG00000022132	USB1	100	85.075	ENSCGRG00000013252	USB1	100	84.701	Cricetulus_griseus_crigri
ENSCCAG00000022132	USB1	98	47.080	ENSCSEG00000013881	usb1	82	51.316	Cynoglossus_semilaevis
ENSCCAG00000022132	USB1	85	49.561	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSCCAG00000022132	USB1	85	50.446	ENSDARG00000003841	usb1	81	50.446	Danio_rerio
ENSCCAG00000022132	USB1	100	82.642	ENSDORG00000001888	Usb1	100	82.642	Dipodomys_ordii
ENSCCAG00000022132	USB1	77	39.524	FBgn0037713	CG16790	78	39.524	Drosophila_melanogaster
ENSCCAG00000022132	USB1	100	69.288	ENSETEG00000019682	USB1	100	69.288	Echinops_telfairi
ENSCCAG00000022132	USB1	84	50.450	ENSEBUG00000005889	usb1	78	50.450	Eptatretus_burgeri
ENSCCAG00000022132	USB1	100	85.660	ENSEASG00005005484	USB1	100	85.660	Equus_asinus_asinus
ENSCCAG00000022132	USB1	100	86.038	ENSECAG00000019493	USB1	91	86.038	Equus_caballus
ENSCCAG00000022132	USB1	66	78.409	ENSEEUG00000000154	USB1	66	78.409	Erinaceus_europaeus
ENSCCAG00000022132	USB1	94	46.800	ENSELUG00000010974	usb1	88	47.347	Esox_lucius
ENSCCAG00000022132	USB1	100	84.644	ENSFCAG00000002693	USB1	100	84.644	Felis_catus
ENSCCAG00000022132	USB1	85	66.372	ENSFALG00000006876	USB1	99	61.624	Ficedula_albicollis
ENSCCAG00000022132	USB1	100	83.895	ENSFDAG00000010052	USB1	100	83.895	Fukomys_damarensis
ENSCCAG00000022132	USB1	89	44.937	ENSFHEG00000012334	usb1	78	52.551	Fundulus_heteroclitus
ENSCCAG00000022132	USB1	84	50.673	ENSGMOG00000004228	usb1	99	50.673	Gadus_morhua
ENSCCAG00000022132	USB1	84	66.518	ENSGALG00000035604	USB1	100	62.406	Gallus_gallus
ENSCCAG00000022132	USB1	98	48.014	ENSGAFG00000021890	usb1	82	52.193	Gambusia_affinis
ENSCCAG00000022132	USB1	85	51.770	ENSGACG00000003257	usb1	81	51.770	Gasterosteus_aculeatus
ENSCCAG00000022132	USB1	100	62.909	ENSGAGG00000022572	USB1	100	62.271	Gopherus_agassizii
ENSCCAG00000022132	USB1	100	96.981	ENSGGOG00000017147	USB1	100	96.981	Gorilla_gorilla
ENSCCAG00000022132	USB1	94	50.602	ENSHBUG00000009823	usb1	81	53.304	Haplochromis_burtoni
ENSCCAG00000022132	USB1	100	84.644	ENSHGLG00000016078	USB1	98	84.644	Heterocephalus_glaber_female
ENSCCAG00000022132	USB1	100	84.644	ENSHGLG00100005562	USB1	98	84.644	Heterocephalus_glaber_male
ENSCCAG00000022132	USB1	82	54.378	ENSHCOG00000015633	usb1	86	54.260	Hippocampus_comes
ENSCCAG00000022132	USB1	85	54.018	ENSIPUG00000008601	usb1	78	54.018	Ictalurus_punctatus
ENSCCAG00000022132	USB1	100	83.883	ENSSTOG00000007548	USB1	100	83.883	Ictidomys_tridecemlineatus
ENSCCAG00000022132	USB1	100	86.517	ENSJJAG00000021859	Usb1	100	86.517	Jaculus_jaculus
ENSCCAG00000022132	USB1	86	52.863	ENSKMAG00000007200	usb1	80	52.863	Kryptolebias_marmoratus
ENSCCAG00000022132	USB1	75	52.261	ENSLBEG00000008452	usb1	64	53.158	Labrus_bergylta
ENSCCAG00000022132	USB1	78	58.852	ENSLACG00000000105	USB1	72	59.330	Latimeria_chalumnae
ENSCCAG00000022132	USB1	95	53.307	ENSLOCG00000000465	usb1	85	54.321	Lepisosteus_oculatus
ENSCCAG00000022132	USB1	100	65.556	ENSLAFG00000002267	USB1	100	65.926	Loxodonta_africana
ENSCCAG00000022132	USB1	100	95.472	ENSMFAG00000003926	USB1	100	95.472	Macaca_fascicularis
ENSCCAG00000022132	USB1	100	95.472	ENSMMUG00000022669	USB1	100	95.472	Macaca_mulatta
ENSCCAG00000022132	USB1	100	95.094	ENSMNEG00000042487	USB1	100	95.094	Macaca_nemestrina
ENSCCAG00000022132	USB1	100	95.472	ENSMLEG00000028756	USB1	100	95.472	Mandrillus_leucophaeus
ENSCCAG00000022132	USB1	98	48.375	ENSMAMG00000015092	usb1	81	53.097	Mastacembelus_armatus
ENSCCAG00000022132	USB1	94	49.799	ENSMZEG00005010008	usb1	80	52.655	Maylandia_zebra
ENSCCAG00000022132	USB1	100	85.393	ENSMAUG00000007832	Usb1	100	85.393	Mesocricetus_auratus
ENSCCAG00000022132	USB1	100	90.189	ENSMICG00000004900	USB1	100	90.189	Microcebus_murinus
ENSCCAG00000022132	USB1	100	84.270	ENSMOCG00000022647	Usb1	100	84.270	Microtus_ochrogaster
ENSCCAG00000022132	USB1	86	51.754	ENSMMOG00000000490	usb1	88	51.754	Mola_mola
ENSCCAG00000022132	USB1	100	67.537	ENSMODG00000014067	USB1	100	66.045	Monodelphis_domestica
ENSCCAG00000022132	USB1	94	49.398	ENSMALG00000005930	usb1	80	52.423	Monopterus_albus
ENSCCAG00000022132	USB1	100	82.022	MGP_CAROLIEiJ_G0031421	Usb1	100	86.726	Mus_caroli
ENSCCAG00000022132	USB1	100	82.397	ENSMUSG00000031792	Usb1	100	87.611	Mus_musculus
ENSCCAG00000022132	USB1	100	82.772	MGP_PahariEiJ_G0023019	Usb1	100	88.034	Mus_pahari
ENSCCAG00000022132	USB1	100	81.648	MGP_SPRETEiJ_G0032540	Usb1	100	81.648	Mus_spretus
ENSCCAG00000022132	USB1	100	81.041	ENSMPUG00000004684	USB1	96	80.669	Mustela_putorius_furo
ENSCCAG00000022132	USB1	87	87.446	ENSMLUG00000007400	USB1	100	87.446	Myotis_lucifugus
ENSCCAG00000022132	USB1	100	84.758	ENSNGAG00000009703	Usb1	100	84.758	Nannospalax_galili
ENSCCAG00000022132	USB1	94	47.107	ENSNBRG00000008747	usb1	99	53.465	Neolamprologus_brichardi
ENSCCAG00000022132	USB1	100	93.711	ENSNLEG00000003340	USB1	100	96.400	Nomascus_leucogenys
ENSCCAG00000022132	USB1	94	58.333	ENSMEUG00000003328	-	100	59.211	Notamacropus_eugenii
ENSCCAG00000022132	USB1	79	76.000	ENSOPRG00000011803	USB1	72	84.848	Ochotona_princeps
ENSCCAG00000022132	USB1	100	81.273	ENSODEG00000016214	USB1	100	81.273	Octodon_degus
ENSCCAG00000022132	USB1	98	48.227	ENSONIG00000011063	usb1	81	53.744	Oreochromis_niloticus
ENSCCAG00000022132	USB1	85	72.444	ENSOANG00000012118	USB1	94	72.444	Ornithorhynchus_anatinus
ENSCCAG00000022132	USB1	86	50.000	ENSORLG00000012479	usb1	83	50.000	Oryzias_latipes
ENSCCAG00000022132	USB1	86	50.439	ENSORLG00020018671	usb1	84	50.439	Oryzias_latipes_hni
ENSCCAG00000022132	USB1	86	50.439	ENSORLG00015009679	usb1	84	50.439	Oryzias_latipes_hsok
ENSCCAG00000022132	USB1	85	50.000	ENSOMEG00000012930	usb1	82	49.561	Oryzias_melastigma
ENSCCAG00000022132	USB1	100	88.664	ENSOGAG00000003273	USB1	100	88.664	Otolemur_garnettii
ENSCCAG00000022132	USB1	95	81.423	ENSOARG00000001107	USB1	93	83.539	Ovis_aries
ENSCCAG00000022132	USB1	100	97.358	ENSPPAG00000042137	USB1	100	97.358	Pan_paniscus
ENSCCAG00000022132	USB1	100	84.644	ENSPPRG00000024797	USB1	100	84.644	Panthera_pardus
ENSCCAG00000022132	USB1	100	84.644	ENSPTIG00000007506	USB1	100	84.644	Panthera_tigris_altaica
ENSCCAG00000022132	USB1	100	95.951	ENSPTRG00000008172	USB1	100	97.196	Pan_troglodytes
ENSCCAG00000022132	USB1	100	95.472	ENSPANG00000025138	USB1	100	95.472	Papio_anubis
ENSCCAG00000022132	USB1	96	51.550	ENSPKIG00000015109	usb1	76	55.111	Paramormyrops_kingsleyae
ENSCCAG00000022132	USB1	85	53.097	ENSPSIG00000004305	USB1	100	53.097	Pelodiscus_sinensis
ENSCCAG00000022132	USB1	84	52.018	ENSPMGG00000017725	usb1	85	52.018	Periophthalmus_magnuspinnatus
ENSCCAG00000022132	USB1	100	84.191	ENSPEMG00000016183	Usb1	100	84.191	Peromyscus_maniculatus_bairdii
ENSCCAG00000022132	USB1	85	50.000	ENSPMAG00000000462	usb1	95	50.000	Petromyzon_marinus
ENSCCAG00000022132	USB1	98	47.292	ENSPFOG00000011130	usb1	82	51.754	Poecilia_formosa
ENSCCAG00000022132	USB1	98	47.292	ENSPLAG00000009820	usb1	82	51.754	Poecilia_latipinna
ENSCCAG00000022132	USB1	98	47.653	ENSPMEG00000006402	usb1	82	51.754	Poecilia_mexicana
ENSCCAG00000022132	USB1	89	45.390	ENSPREG00000001047	usb1	79	53.061	Poecilia_reticulata
ENSCCAG00000022132	USB1	95	92.460	ENSPPYG00000007401	USB1	100	92.460	Pongo_abelii
ENSCCAG00000022132	USB1	100	90.566	ENSPCOG00000022612	USB1	100	90.566	Propithecus_coquereli
ENSCCAG00000022132	USB1	100	81.132	ENSPVAG00000004613	USB1	100	81.132	Pteropus_vampyrus
ENSCCAG00000022132	USB1	94	51.082	ENSPNYG00000022262	usb1	81	53.304	Pundamilia_nyererei
ENSCCAG00000022132	USB1	98	47.126	ENSPNAG00000011736	usb1	76	51.786	Pygocentrus_nattereri
ENSCCAG00000022132	USB1	100	84.644	ENSRNOG00000013216	Usb1	100	84.644	Rattus_norvegicus
ENSCCAG00000022132	USB1	100	95.547	ENSRBIG00000044466	USB1	100	97.196	Rhinopithecus_bieti
ENSCCAG00000022132	USB1	100	95.849	ENSRROG00000029211	USB1	100	95.849	Rhinopithecus_roxellana
ENSCCAG00000022132	USB1	100	97.358	ENSSBOG00000029362	USB1	100	97.358	Saimiri_boliviensis_boliviensis
ENSCCAG00000022132	USB1	83	72.146	ENSSHAG00000006993	USB1	94	69.620	Sarcophilus_harrisii
ENSCCAG00000022132	USB1	89	55.882	ENSSFOG00015023663	usb1	75	55.882	Scleropages_formosus
ENSCCAG00000022132	USB1	98	48.551	ENSSMAG00000015834	usb1	99	46.801	Scophthalmus_maximus
ENSCCAG00000022132	USB1	85	54.911	ENSSDUG00000002949	usb1	83	54.911	Seriola_dumerili
ENSCCAG00000022132	USB1	98	47.018	ENSSLDG00000014174	usb1	99	49.104	Seriola_lalandi_dorsalis
ENSCCAG00000022132	USB1	81	68.224	ENSSPUG00000006741	USB1	100	68.224	Sphenodon_punctatus
ENSCCAG00000022132	USB1	86	51.982	ENSSPAG00000007484	usb1	80	51.982	Stegastes_partitus
ENSCCAG00000022132	USB1	100	84.387	ENSSSCG00000002807	USB1	100	82.900	Sus_scrofa
ENSCCAG00000022132	USB1	80	69.340	ENSTGUG00000004792	USB1	87	68.018	Taeniopygia_guttata
ENSCCAG00000022132	USB1	98	47.761	ENSTRUG00000021069	usb1	86	50.216	Takifugu_rubripes
ENSCCAG00000022132	USB1	98	45.660	ENSTNIG00000000626	usb1	83	48.214	Tetraodon_nigroviridis
ENSCCAG00000022132	USB1	88	62.500	ENSTBEG00000001507	USB1	100	62.500	Tupaia_belangeri
ENSCCAG00000022132	USB1	100	82.528	ENSUAMG00000016823	USB1	100	82.528	Ursus_americanus
ENSCCAG00000022132	USB1	81	86.916	ENSUMAG00000021369	USB1	100	86.916	Ursus_maritimus
ENSCCAG00000022132	USB1	99	49.367	ENSVPAG00000009834	-	59	86.667	Vicugna_pacos
ENSCCAG00000022132	USB1	99	81.716	ENSVVUG00000023700	USB1	93	85.062	Vulpes_vulpes
ENSCCAG00000022132	USB1	82	55.505	ENSXETG00000013795	usb1	94	54.237	Xenopus_tropicalis
ENSCCAG00000022132	USB1	94	49.600	ENSXMAG00000024687	usb1	67	52.193	Xiphophorus_maculatus