EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000022258 (Gene tree)
Gene ID: 108291836
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 20103 bases
Position: chrKV389895.1:182372-202474
Accession: 108291836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000009013	APOBEC_N	PF08210.11	1.9e-28	1	1
ENSCCAP00000009013	APOBEC_C	PF05240.14	5.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000026395	APOBEC1-201	940	XM_017512292	ENSCCAP00000009013	236 (aa)	XP_017367781	A0A2K5PZC0

Gene Model

Click here to download ENSCCAG00000022258's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000022258's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000022258	APOBEC1	50	38.158	ENSCCAG00000027450	-	51	38.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000022258	APOBEC1	100	89.407	ENSG00000111701	APOBEC1	100	89.407	Homo_sapiens
ENSCCAG00000022258	APOBEC1	98	77.489	ENSAMEG00000007098	APOBEC1	98	77.489	Ailuropoda_melanoleuca
ENSCCAG00000022258	APOBEC1	72	39.181	ENSACAG00000028578	-	93	39.181	Anolis_carolinensis
ENSCCAG00000022258	APOBEC1	100	94.492	ENSANAG00000027743	APOBEC1	95	94.492	Aotus_nancymaae
ENSCCAG00000022258	APOBEC1	100	75.847	ENSBTAG00000014683	APOBEC1	100	75.847	Bos_taurus
ENSCCAG00000022258	APOBEC1	94	95.023	ENSCJAG00000005398	APOBEC1	100	95.023	Callithrix_jacchus
ENSCCAG00000022258	APOBEC1	100	77.119	ENSCAFG00000013901	APOBEC1	100	77.119	Canis_familiaris
ENSCCAG00000022258	APOBEC1	96	76.991	ENSCAFG00020003511	APOBEC1	95	76.991	Canis_lupus_dingo
ENSCCAG00000022258	APOBEC1	98	75.758	ENSCHIG00000011898	APOBEC1	96	75.758	Capra_hircus
ENSCCAG00000022258	APOBEC1	60	82.270	ENSTSYG00000029141	APOBEC1	100	82.270	Carlito_syrichta
ENSCCAG00000022258	APOBEC1	91	68.692	ENSCAPG00000015882	-	99	68.692	Cavia_aperea
ENSCCAG00000022258	APOBEC1	99	67.234	ENSCPOG00000033068	APOBEC1	99	67.234	Cavia_porcellus
ENSCCAG00000022258	APOBEC1	100	92.797	ENSCATG00000021613	APOBEC1	95	92.797	Cercocebus_atys
ENSCCAG00000022258	APOBEC1	97	69.432	ENSCLAG00000014645	APOBEC1	99	69.432	Chinchilla_lanigera
ENSCCAG00000022258	APOBEC1	81	92.670	ENSCSAG00000009817	APOBEC1	100	92.670	Chlorocebus_sabaeus
ENSCCAG00000022258	APOBEC1	78	47.059	ENSCPBG00000014335	-	76	47.059	Chrysemys_picta_bellii
ENSCCAG00000022258	APOBEC1	94	43.556	ENSCPBG00000014331	-	90	43.556	Chrysemys_picta_bellii
ENSCCAG00000022258	APOBEC1	94	47.534	ENSCPBG00000014329	-	61	47.534	Chrysemys_picta_bellii
ENSCCAG00000022258	APOBEC1	81	48.438	ENSCPBG00000014328	-	84	48.438	Chrysemys_picta_bellii
ENSCCAG00000022258	APOBEC1	88	40.566	ENSCPBG00000014327	-	81	40.566	Chrysemys_picta_bellii
ENSCCAG00000022258	APOBEC1	78	47.849	ENSCPBG00000017398	-	81	47.849	Chrysemys_picta_bellii
ENSCCAG00000022258	APOBEC1	97	91.739	ENSCANG00000038359	APOBEC1	100	91.739	Colobus_angolensis_palliatus
ENSCCAG00000022258	APOBEC1	97	70.306	ENSCGRG00001011130	Apobec1	100	70.306	Cricetulus_griseus_chok1gshd
ENSCCAG00000022258	APOBEC1	97	70.306	ENSCGRG00000008644	Apobec1	100	70.306	Cricetulus_griseus_crigri
ENSCCAG00000022258	APOBEC1	100	79.661	ENSDNOG00000010926	APOBEC1	100	79.661	Dasypus_novemcinctus
ENSCCAG00000022258	APOBEC1	90	65.421	ENSDORG00000023717	Apobec1	100	65.421	Dipodomys_ordii
ENSCCAG00000022258	APOBEC1	99	77.872	ENSETEG00000004867	APOBEC1	99	77.872	Echinops_telfairi
ENSCCAG00000022258	APOBEC1	98	81.385	ENSEASG00005015951	APOBEC1	97	81.385	Equus_asinus_asinus
ENSCCAG00000022258	APOBEC1	81	83.770	ENSECAG00000017163	APOBEC1	100	83.770	Equus_caballus
ENSCCAG00000022258	APOBEC1	86	54.412	ENSEEUG00000007530	-	97	54.412	Erinaceus_europaeus
ENSCCAG00000022258	APOBEC1	93	64.706	ENSEEUG00000009112	-	98	64.706	Erinaceus_europaeus
ENSCCAG00000022258	APOBEC1	100	79.237	ENSFCAG00000009350	APOBEC1	100	79.237	Felis_catus
ENSCCAG00000022258	APOBEC1	60	48.252	ENSFALG00000007257	-	70	48.252	Ficedula_albicollis
ENSCCAG00000022258	APOBEC1	88	58.937	ENSFDAG00000018470	APOBEC1	99	58.937	Fukomys_damarensis
ENSCCAG00000022258	APOBEC1	72	44.886	ENSGAGG00000021745	-	64	44.886	Gopherus_agassizii
ENSCCAG00000022258	APOBEC1	88	47.847	ENSGAGG00000011837	-	86	54.167	Gopherus_agassizii
ENSCCAG00000022258	APOBEC1	68	53.704	ENSGAGG00000004947	-	80	53.704	Gopherus_agassizii
ENSCCAG00000022258	APOBEC1	88	42.105	ENSGAGG00000021744	-	79	42.105	Gopherus_agassizii
ENSCCAG00000022258	APOBEC1	72	49.123	ENSGAGG00000006624	-	62	49.123	Gopherus_agassizii
ENSCCAG00000022258	APOBEC1	99	65.106	ENSHGLG00000001495	APOBEC1	99	65.106	Heterocephalus_glaber_female
ENSCCAG00000022258	APOBEC1	99	64.255	ENSHGLG00100002187	APOBEC1	99	64.255	Heterocephalus_glaber_male
ENSCCAG00000022258	APOBEC1	91	64.651	ENSSTOG00000021971	APOBEC1	100	79.592	Ictidomys_tridecemlineatus
ENSCCAG00000022258	APOBEC1	97	74.672	ENSJJAG00000022108	Apobec1	100	74.672	Jaculus_jaculus
ENSCCAG00000022258	APOBEC1	94	77.130	ENSLAFG00000030837	APOBEC1	100	77.130	Loxodonta_africana
ENSCCAG00000022258	APOBEC1	100	93.220	ENSMFAG00000000277	APOBEC1	100	94.764	Macaca_fascicularis
ENSCCAG00000022258	APOBEC1	100	92.797	ENSMNEG00000029670	APOBEC1	100	92.797	Macaca_nemestrina
ENSCCAG00000022258	APOBEC1	100	92.797	ENSMLEG00000036301	APOBEC1	100	92.797	Mandrillus_leucophaeus
ENSCCAG00000022258	APOBEC1	92	70.833	ENSMAUG00000022167	Apobec1	97	70.833	Mesocricetus_auratus
ENSCCAG00000022258	APOBEC1	100	80.932	ENSMICG00000043645	APOBEC1	100	80.932	Microcebus_murinus
ENSCCAG00000022258	APOBEC1	100	67.797	ENSMODG00000018004	APOBEC1	100	67.797	Monodelphis_domestica
ENSCCAG00000022258	APOBEC1	97	69.737	ENSMUSG00000040613	Apobec1	99	69.737	Mus_musculus
ENSCCAG00000022258	APOBEC1	97	68.421	MGP_PahariEiJ_G0022580	-	99	68.421	Mus_pahari
ENSCCAG00000022258	APOBEC1	97	69.737	MGP_SPRETEiJ_G0029857	Apobec1	99	69.737	Mus_spretus
ENSCCAG00000022258	APOBEC1	100	75.000	ENSMPUG00000017532	APOBEC1	100	75.000	Mustela_putorius_furo
ENSCCAG00000022258	APOBEC1	97	72.052	ENSNGAG00000022607	Apobec1	100	72.052	Nannospalax_galili
ENSCCAG00000022258	APOBEC1	100	91.102	ENSNLEG00000005342	APOBEC1	100	91.102	Nomascus_leucogenys
ENSCCAG00000022258	APOBEC1	100	64.831	ENSMEUG00000013406	APOBEC1	100	64.831	Notamacropus_eugenii
ENSCCAG00000022258	APOBEC1	77	64.641	ENSOPRG00000009508	-	100	64.641	Ochotona_princeps
ENSCCAG00000022258	APOBEC1	100	76.695	ENSOCUG00000025736	APOBEC1	88	76.695	Oryctolagus_cuniculus
ENSCCAG00000022258	APOBEC1	98	79.654	ENSOGAG00000026415	APOBEC1	98	79.654	Otolemur_garnettii
ENSCCAG00000022258	APOBEC1	100	75.424	ENSOARG00000002072	APOBEC1	99	75.424	Ovis_aries
ENSCCAG00000022258	APOBEC1	98	82.251	ENSPPAG00000027657	APOBEC1	98	82.251	Pan_paniscus
ENSCCAG00000022258	APOBEC1	100	78.814	ENSPPRG00000012182	APOBEC1	100	78.814	Panthera_pardus
ENSCCAG00000022258	APOBEC1	100	78.814	ENSPTIG00000020280	APOBEC1	100	78.814	Panthera_tigris_altaica
ENSCCAG00000022258	APOBEC1	100	89.831	ENSPTRG00000004614	APOBEC1	100	89.831	Pan_troglodytes
ENSCCAG00000022258	APOBEC1	100	92.373	ENSPANG00000021027	APOBEC1	100	92.373	Papio_anubis
ENSCCAG00000022258	APOBEC1	57	50.459	ENSPSIG00000012791	-	75	50.459	Pelodiscus_sinensis
ENSCCAG00000022258	APOBEC1	99	44.082	ENSPSIG00000012568	-	99	44.082	Pelodiscus_sinensis
ENSCCAG00000022258	APOBEC1	97	69.432	ENSPEMG00000023841	Apobec1	100	69.432	Peromyscus_maniculatus_bairdii
ENSCCAG00000022258	APOBEC1	100	67.797	ENSPCIG00000023973	APOBEC1	100	67.797	Phascolarctos_cinereus
ENSCCAG00000022258	APOBEC1	100	90.254	ENSPPYG00000004228	APOBEC1	95	90.254	Pongo_abelii
ENSCCAG00000022258	APOBEC1	79	80.749	ENSPCAG00000008733	APOBEC1	100	80.749	Procavia_capensis
ENSCCAG00000022258	APOBEC1	94	81.982	ENSPCOG00000013957	APOBEC1	98	81.982	Propithecus_coquereli
ENSCCAG00000022258	APOBEC1	100	64.407	ENSPVAG00000010709	APOBEC1	100	64.407	Pteropus_vampyrus
ENSCCAG00000022258	APOBEC1	97	68.421	ENSRNOG00000015411	Apobec1	99	68.421	Rattus_norvegicus
ENSCCAG00000022258	APOBEC1	100	91.949	ENSRBIG00000031161	APOBEC1	100	91.949	Rhinopithecus_bieti
ENSCCAG00000022258	APOBEC1	100	91.525	ENSRROG00000033576	APOBEC1	100	92.670	Rhinopithecus_roxellana
ENSCCAG00000022258	APOBEC1	73	95.954	ENSSBOG00000030587	APOBEC1	98	95.954	Saimiri_boliviensis_boliviensis
ENSCCAG00000022258	APOBEC1	96	69.163	ENSSHAG00000008925	APOBEC1	99	69.163	Sarcophilus_harrisii
ENSCCAG00000022258	APOBEC1	56	68.702	ENSSARG00000011972	-	99	68.702	Sorex_araneus
ENSCCAG00000022258	APOBEC1	73	66.279	ENSSARG00000000032	-	100	66.279	Sorex_araneus
ENSCCAG00000022258	APOBEC1	88	42.180	ENSSPUG00000009044	-	81	42.180	Sphenodon_punctatus
ENSCCAG00000022258	APOBEC1	100	79.237	ENSSSCG00000000668	APOBEC1	100	79.237	Sus_scrofa
ENSCCAG00000022258	APOBEC1	61	50.345	ENSTGUG00000013118	-	99	50.345	Taeniopygia_guttata
ENSCCAG00000022258	APOBEC1	94	74.661	ENSTBEG00000010043	APOBEC1	94	74.661	Tupaia_belangeri
ENSCCAG00000022258	APOBEC1	79	78.610	ENSTTRG00000014015	APOBEC1	100	78.610	Tursiops_truncatus
ENSCCAG00000022258	APOBEC1	98	77.056	ENSUAMG00000011636	APOBEC1	95	77.056	Ursus_americanus
ENSCCAG00000022258	APOBEC1	98	77.056	ENSUMAG00000016552	APOBEC1	95	77.056	Ursus_maritimus
ENSCCAG00000022258	APOBEC1	100	76.271	ENSVPAG00000001343	APOBEC1	100	76.271	Vicugna_pacos
ENSCCAG00000022258	APOBEC1	100	77.966	ENSVVUG00000010522	APOBEC1	100	77.966	Vulpes_vulpes