EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000024179 (Gene tree)
Gene ID: 108306009
Gene Symbol: SRP54
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 34121 bases
Position: chrKV389495.1:1767312-1801432
Accession: 108306009
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000012811	SRP54	PF00448.22	1.6e-78	1	1
ENSCCAP00000012787	SRP54	PF00448.22	2e-78	1	1
ENSCCAP00000012805	SRP54	PF00448.22	4.8e-73	1	1
ENSCCAP00000012803	SRP54	PF00448.22	5e-73	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000030208	SRP54-201	1338	XM_017530777	ENSCCAP00000012787	445 (aa)	XP_017386266	A0A2K5QA64
ENSCCAT00000030226	SRP54-203	1272	-	ENSCCAP00000012805	423 (aa)	-	A0A2K5QAD5
ENSCCAT00000030224	SRP54-202	1290	-	ENSCCAP00000012803	429 (aa)	-	A0A2K5QA76
ENSCCAT00000030232	SRP54-204	1671	-	ENSCCAP00000012811	419 (aa)	-	A0A2K5QA85

Gene Model

Click here to download ENSCCAG00000024179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000024179's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000024179	SRP54	100	100.000	ENSG00000100883	SRP54	95	100.000	Homo_sapiens
ENSCCAG00000024179	SRP54	100	95.465	ENSAPOG00000011314	srp54	90	95.238	Acanthochromis_polyacanthus
ENSCCAG00000024179	SRP54	100	100.000	ENSAMEG00000015544	SRP54	90	99.762	Ailuropoda_melanoleuca
ENSCCAG00000024179	SRP54	88	93.699	ENSACIG00000022831	srp54	86	93.699	Amphilophus_citrinellus
ENSCCAG00000024179	SRP54	100	95.465	ENSAOCG00000019401	srp54	90	95.238	Amphiprion_ocellaris
ENSCCAG00000024179	SRP54	100	95.465	ENSAPEG00000001977	srp54	90	95.238	Amphiprion_percula
ENSCCAG00000024179	SRP54	100	95.943	ENSATEG00000013877	srp54	90	95.714	Anabas_testudineus
ENSCCAG00000024179	SRP54	93	98.458	ENSAPLG00000010125	SRP54	85	98.205	Anas_platyrhynchos
ENSCCAG00000024179	SRP54	78	81.873	ENSACAG00000001124	-	100	81.873	Anolis_carolinensis
ENSCCAG00000024179	SRP54	100	98.329	ENSACAG00000002103	-	90	98.095	Anolis_carolinensis
ENSCCAG00000024179	SRP54	100	98.568	ENSACAG00000010631	-	99	96.737	Anolis_carolinensis
ENSCCAG00000024179	SRP54	100	100.000	ENSANAG00000022133	SRP54	90	99.762	Aotus_nancymaae
ENSCCAG00000024179	SRP54	100	95.704	ENSACLG00000015866	srp54	90	95.476	Astatotilapia_calliptera
ENSCCAG00000024179	SRP54	100	95.465	ENSAMXG00000032669	SRP54	90	95.238	Astyanax_mexicanus
ENSCCAG00000024179	SRP54	100	100.000	ENSBTAG00000019085	SRP54	90	99.762	Bos_taurus
ENSCCAG00000024179	SRP54	98	73.608	WBGene00009012	F21D5.7	86	72.131	Caenorhabditis_elegans
ENSCCAG00000024179	SRP54	100	100.000	ENSCJAG00000006581	SRP54	92	100.000	Callithrix_jacchus
ENSCCAG00000024179	SRP54	100	100.000	ENSCAFG00000013331	SRP54	90	99.762	Canis_familiaris
ENSCCAG00000024179	SRP54	100	100.000	ENSCAFG00020023427	SRP54	90	99.762	Canis_lupus_dingo
ENSCCAG00000024179	SRP54	100	100.000	ENSCHIG00000026345	SRP54	90	99.762	Capra_hircus
ENSCCAG00000024179	SRP54	100	99.761	ENSTSYG00000002680	-	92	99.761	Carlito_syrichta
ENSCCAG00000024179	SRP54	93	88.462	ENSTSYG00000035333	-	93	77.350	Carlito_syrichta
ENSCCAG00000024179	SRP54	93	61.728	ENSCAPG00000008780	SRP54	100	58.085	Cavia_aperea
ENSCCAG00000024179	SRP54	100	100.000	ENSCPOG00000003691	SRP54	90	99.762	Cavia_porcellus
ENSCCAG00000024179	SRP54	100	100.000	ENSCATG00000034083	SRP54	92	100.000	Cercocebus_atys
ENSCCAG00000024179	SRP54	100	100.000	ENSCLAG00000015076	SRP54	90	99.762	Chinchilla_lanigera
ENSCCAG00000024179	SRP54	100	100.000	ENSCSAG00000015575	SRP54	90	99.762	Chlorocebus_sabaeus
ENSCCAG00000024179	SRP54	95	85.354	ENSCHOG00000008986	SRP54	89	85.139	Choloepus_hoffmanni
ENSCCAG00000024179	SRP54	100	99.045	ENSCPBG00000026195	SRP54	90	98.810	Chrysemys_picta_bellii
ENSCCAG00000024179	SRP54	100	85.714	ENSCING00000007380	-	91	85.714	Ciona_intestinalis
ENSCCAG00000024179	SRP54	100	100.000	ENSCANG00000028532	SRP54	92	100.000	Colobus_angolensis_palliatus
ENSCCAG00000024179	SRP54	100	99.523	ENSCGRG00001009525	-	90	99.286	Cricetulus_griseus_chok1gshd
ENSCCAG00000024179	SRP54	73	99.003	ENSCGRG00000009453	-	77	99.003	Cricetulus_griseus_crigri
ENSCCAG00000024179	SRP54	100	94.511	ENSCSEG00000012392	srp54	90	94.286	Cynoglossus_semilaevis
ENSCCAG00000024179	SRP54	100	95.465	ENSCVAG00000010395	srp54	90	95.238	Cyprinodon_variegatus
ENSCCAG00000024179	SRP54	100	95.943	ENSDARG00000098367	srp54	90	95.714	Danio_rerio
ENSCCAG00000024179	SRP54	100	100.000	ENSDNOG00000032525	SRP54	90	99.762	Dasypus_novemcinctus
ENSCCAG00000024179	SRP54	78	88.450	ENSDORG00000005159	-	97	74.483	Dipodomys_ordii
ENSCCAG00000024179	SRP54	95	77.000	FBgn0010747	Srp54k	84	74.473	Drosophila_melanogaster
ENSCCAG00000024179	SRP54	99	58.373	ENSETEG00000012102	-	99	58.373	Echinops_telfairi
ENSCCAG00000024179	SRP54	100	99.523	ENSETEG00000016307	-	83	99.523	Echinops_telfairi
ENSCCAG00000024179	SRP54	100	87.351	ENSEBUG00000009437	-	90	87.143	Eptatretus_burgeri
ENSCCAG00000024179	SRP54	100	100.000	ENSEASG00005002057	SRP54	90	99.762	Equus_asinus_asinus
ENSCCAG00000024179	SRP54	99	99.758	ENSECAG00000018042	SRP54	88	99.517	Equus_caballus
ENSCCAG00000024179	SRP54	100	100.000	ENSEEUG00000001511	SRP54	88	100.000	Erinaceus_europaeus
ENSCCAG00000024179	SRP54	100	94.988	ENSELUG00000003395	srp54	90	94.762	Esox_lucius
ENSCCAG00000024179	SRP54	100	99.761	ENSFCAG00000032033	SRP54	90	99.524	Felis_catus
ENSCCAG00000024179	SRP54	100	98.568	ENSFALG00000005995	SRP54	90	98.333	Ficedula_albicollis
ENSCCAG00000024179	SRP54	100	100.000	ENSFDAG00000016767	SRP54	90	99.762	Fukomys_damarensis
ENSCCAG00000024179	SRP54	100	95.227	ENSFHEG00000004263	srp54	90	95.000	Fundulus_heteroclitus
ENSCCAG00000024179	SRP54	100	89.499	ENSGMOG00000011391	srp54	88	89.499	Gadus_morhua
ENSCCAG00000024179	SRP54	100	98.568	ENSGALG00000023135	SRP54	90	98.333	Gallus_gallus
ENSCCAG00000024179	SRP54	100	95.704	ENSGAFG00000011586	srp54	90	95.476	Gambusia_affinis
ENSCCAG00000024179	SRP54	100	95.227	ENSGACG00000004181	srp54	90	95.000	Gasterosteus_aculeatus
ENSCCAG00000024179	SRP54	100	99.045	ENSGAGG00000014766	SRP54	90	98.810	Gopherus_agassizii
ENSCCAG00000024179	SRP54	100	100.000	ENSGGOG00000002926	SRP54	92	100.000	Gorilla_gorilla
ENSCCAG00000024179	SRP54	100	95.704	ENSHBUG00000005678	srp54	90	95.476	Haplochromis_burtoni
ENSCCAG00000024179	SRP54	100	100.000	ENSHGLG00000002850	SRP54	90	99.762	Heterocephalus_glaber_female
ENSCCAG00000024179	SRP54	100	100.000	ENSHGLG00100005263	SRP54	90	99.762	Heterocephalus_glaber_male
ENSCCAG00000024179	SRP54	100	69.048	ENSHGLG00100007281	-	100	63.804	Heterocephalus_glaber_male
ENSCCAG00000024179	SRP54	100	94.033	ENSHCOG00000021127	srp54	90	93.810	Hippocampus_comes
ENSCCAG00000024179	SRP54	100	94.988	ENSIPUG00000001420	srp54	90	94.762	Ictalurus_punctatus
ENSCCAG00000024179	SRP54	100	100.000	ENSSTOG00000016023	SRP54	90	99.762	Ictidomys_tridecemlineatus
ENSCCAG00000024179	SRP54	100	75.895	ENSJJAG00000016404	-	94	75.895	Jaculus_jaculus
ENSCCAG00000024179	SRP54	100	93.795	ENSJJAG00000013417	-	89	93.571	Jaculus_jaculus
ENSCCAG00000024179	SRP54	100	95.227	ENSKMAG00000007707	srp54	90	95.000	Kryptolebias_marmoratus
ENSCCAG00000024179	SRP54	100	95.465	ENSLBEG00000021122	srp54	90	95.238	Labrus_bergylta
ENSCCAG00000024179	SRP54	100	95.465	ENSLBEG00000018690	srp54	90	95.238	Labrus_bergylta
ENSCCAG00000024179	SRP54	100	95.465	ENSLACG00000017890	SRP54	90	95.238	Latimeria_chalumnae
ENSCCAG00000024179	SRP54	100	96.659	ENSLOCG00000009440	srp54	90	96.429	Lepisosteus_oculatus
ENSCCAG00000024179	SRP54	100	100.000	ENSLAFG00000012007	SRP54	90	99.762	Loxodonta_africana
ENSCCAG00000024179	SRP54	100	100.000	ENSMFAG00000044371	SRP54	92	100.000	Macaca_fascicularis
ENSCCAG00000024179	SRP54	100	100.000	ENSMMUG00000015073	FAM177A1	92	100.000	Macaca_mulatta
ENSCCAG00000024179	SRP54	100	100.000	ENSMNEG00000006947	SRP54	92	100.000	Macaca_nemestrina
ENSCCAG00000024179	SRP54	100	100.000	ENSMLEG00000042251	SRP54	92	100.000	Mandrillus_leucophaeus
ENSCCAG00000024179	SRP54	100	95.704	ENSMAMG00000004803	srp54	90	95.476	Mastacembelus_armatus
ENSCCAG00000024179	SRP54	100	95.704	ENSMZEG00005027528	srp54	90	95.476	Maylandia_zebra
ENSCCAG00000024179	SRP54	100	98.568	ENSMGAG00000012481	SRP54	89	98.568	Meleagris_gallopavo
ENSCCAG00000024179	SRP54	100	99.761	ENSMAUG00000014447	-	90	99.524	Mesocricetus_auratus
ENSCCAG00000024179	SRP54	100	100.000	ENSMICG00000010270	SRP54	90	99.762	Microcebus_murinus
ENSCCAG00000024179	SRP54	100	99.761	ENSMOCG00000000948	-	95	99.761	Microtus_ochrogaster
ENSCCAG00000024179	SRP54	87	93.113	ENSMMOG00000020303	srp54	86	93.113	Mola_mola
ENSCCAG00000024179	SRP54	100	99.761	ENSMODG00000012925	-	90	99.524	Monodelphis_domestica
ENSCCAG00000024179	SRP54	100	99.761	ENSMODG00000023150	-	90	99.524	Monodelphis_domestica
ENSCCAG00000024179	SRP54	86	94.986	ENSMALG00000009163	srp54	87	94.986	Monopterus_albus
ENSCCAG00000024179	SRP54	100	99.761	MGP_CAROLIEiJ_G0017754	-	90	99.524	Mus_caroli
ENSCCAG00000024179	SRP54	100	99.761	ENSMUSG00000073079	Srp54a	90	99.524	Mus_musculus
ENSCCAG00000024179	SRP54	100	99.761	ENSMUSG00000112449	Srp54b	90	99.524	Mus_musculus
ENSCCAG00000024179	SRP54	100	98.807	ENSMUSG00000079108	Srp54c	90	98.571	Mus_musculus
ENSCCAG00000024179	SRP54	100	99.761	MGP_PahariEiJ_G0029510	-	90	99.524	Mus_pahari
ENSCCAG00000024179	SRP54	100	100.000	ENSMPUG00000016302	SRP54	90	99.762	Mustela_putorius_furo
ENSCCAG00000024179	SRP54	100	99.284	ENSMLUG00000008958	SRP54	90	99.048	Myotis_lucifugus
ENSCCAG00000024179	SRP54	100	87.828	ENSNGAG00000019806	-	89	87.619	Nannospalax_galili
ENSCCAG00000024179	SRP54	100	95.704	ENSNBRG00000006000	srp54	95	95.704	Neolamprologus_brichardi
ENSCCAG00000024179	SRP54	100	100.000	ENSNLEG00000003496	SRP54	92	100.000	Nomascus_leucogenys
ENSCCAG00000024179	SRP54	70	100.000	ENSMEUG00000000138	-	71	100.000	Notamacropus_eugenii
ENSCCAG00000024179	SRP54	100	100.000	ENSODEG00000004865	SRP54	90	99.762	Octodon_degus
ENSCCAG00000024179	SRP54	100	95.704	ENSONIG00000011768	srp54	90	95.476	Oreochromis_niloticus
ENSCCAG00000024179	SRP54	100	100.000	ENSOANG00000014051	SRP54	90	99.762	Ornithorhynchus_anatinus
ENSCCAG00000024179	SRP54	100	99.284	ENSOCUG00000007838	SRP54	90	99.048	Oryctolagus_cuniculus
ENSCCAG00000024179	SRP54	100	95.704	ENSORLG00000010027	srp54	90	95.476	Oryzias_latipes
ENSCCAG00000024179	SRP54	100	95.704	ENSORLG00020001878	srp54	90	95.476	Oryzias_latipes_hni
ENSCCAG00000024179	SRP54	100	95.704	ENSORLG00015021866	srp54	90	95.476	Oryzias_latipes_hsok
ENSCCAG00000024179	SRP54	100	95.465	ENSOMEG00000020952	srp54	90	95.238	Oryzias_melastigma
ENSCCAG00000024179	SRP54	100	100.000	ENSOGAG00000012188	SRP54	90	99.762	Otolemur_garnettii
ENSCCAG00000024179	SRP54	100	100.000	ENSOARG00000007160	SRP54	90	99.762	Ovis_aries
ENSCCAG00000024179	SRP54	100	100.000	ENSPPAG00000017434	SRP54	92	100.000	Pan_paniscus
ENSCCAG00000024179	SRP54	100	98.568	ENSPPRG00000014047	SRP54	92	98.568	Panthera_pardus
ENSCCAG00000024179	SRP54	100	99.761	ENSPTIG00000000744	SRP54	86	99.524	Panthera_tigris_altaica
ENSCCAG00000024179	SRP54	100	100.000	ENSPTRG00000006259	FAM177A1	92	100.000	Pan_troglodytes
ENSCCAG00000024179	SRP54	100	100.000	ENSPANG00000023853	SRP54	92	100.000	Papio_anubis
ENSCCAG00000024179	SRP54	100	95.704	ENSPKIG00000001953	srp54	90	95.476	Paramormyrops_kingsleyae
ENSCCAG00000024179	SRP54	100	98.807	ENSPSIG00000006476	SRP54	90	98.571	Pelodiscus_sinensis
ENSCCAG00000024179	SRP54	90	91.755	ENSPMGG00000004127	srp54	89	91.755	Periophthalmus_magnuspinnatus
ENSCCAG00000024179	SRP54	100	84.248	ENSPEMG00000019634	-	89	84.048	Peromyscus_maniculatus_bairdii
ENSCCAG00000024179	SRP54	100	88.544	ENSPMAG00000006078	-	92	86.374	Petromyzon_marinus
ENSCCAG00000024179	SRP54	100	99.761	ENSPCIG00000016175	SRP54	90	99.524	Phascolarctos_cinereus
ENSCCAG00000024179	SRP54	100	95.704	ENSPFOG00000008870	srp54	90	95.476	Poecilia_formosa
ENSCCAG00000024179	SRP54	100	95.704	ENSPLAG00000009889	srp54	90	95.476	Poecilia_latipinna
ENSCCAG00000024179	SRP54	100	95.704	ENSPMEG00000008601	srp54	90	95.476	Poecilia_mexicana
ENSCCAG00000024179	SRP54	100	95.704	ENSPREG00000004505	srp54	90	95.476	Poecilia_reticulata
ENSCCAG00000024179	SRP54	100	100.000	ENSPPYG00000005739	SRP54	83	100.000	Pongo_abelii
ENSCCAG00000024179	SRP54	100	95.227	ENSPCAG00000006268	SRP54	90	95.227	Procavia_capensis
ENSCCAG00000024179	SRP54	100	97.852	ENSPCOG00000022473	SRP54	83	97.852	Propithecus_coquereli
ENSCCAG00000024179	SRP54	58	100.000	ENSPVAG00000010056	SRP54	66	100.000	Pteropus_vampyrus
ENSCCAG00000024179	SRP54	100	95.704	ENSPNYG00000009717	srp54	90	95.476	Pundamilia_nyererei
ENSCCAG00000024179	SRP54	100	95.704	ENSPNAG00000008544	srp54	90	95.476	Pygocentrus_nattereri
ENSCCAG00000024179	SRP54	100	99.523	ENSRNOG00000032776	Srp54a	90	99.286	Rattus_norvegicus
ENSCCAG00000024179	SRP54	100	100.000	ENSRROG00000041292	SRP54	92	100.000	Rhinopithecus_roxellana
ENSCCAG00000024179	SRP54	81	56.433	YPR088C	SRP54	80	48.299	Saccharomyces_cerevisiae
ENSCCAG00000024179	SRP54	100	100.000	ENSSBOG00000035145	SRP54	89	99.762	Saimiri_boliviensis_boliviensis
ENSCCAG00000024179	SRP54	82	100.000	ENSSHAG00000000671	SRP54	100	100.000	Sarcophilus_harrisii
ENSCCAG00000024179	SRP54	100	96.420	ENSSFOG00015013920	srp54	90	96.190	Scleropages_formosus
ENSCCAG00000024179	SRP54	100	88.864	ENSSMAG00000002441	srp54	90	88.667	Scophthalmus_maximus
ENSCCAG00000024179	SRP54	100	95.227	ENSSDUG00000018586	srp54	90	95.000	Seriola_dumerili
ENSCCAG00000024179	SRP54	100	94.988	ENSSLDG00000010476	srp54	90	94.762	Seriola_lalandi_dorsalis
ENSCCAG00000024179	SRP54	100	100.000	ENSSARG00000002744	SRP54	90	99.762	Sorex_araneus
ENSCCAG00000024179	SRP54	100	99.045	ENSSPUG00000013101	SRP54	90	98.810	Sphenodon_punctatus
ENSCCAG00000024179	SRP54	100	95.465	ENSSPAG00000002354	srp54	90	95.238	Stegastes_partitus
ENSCCAG00000024179	SRP54	100	100.000	ENSSSCG00000001955	SRP54	90	99.762	Sus_scrofa
ENSCCAG00000024179	SRP54	93	98.458	ENSTGUG00000011945	-	85	98.205	Taeniopygia_guttata
ENSCCAG00000024179	SRP54	100	94.749	ENSTRUG00000007057	srp54	90	94.524	Takifugu_rubripes
ENSCCAG00000024179	SRP54	100	94.272	ENSTNIG00000002589	srp54	90	94.048	Tetraodon_nigroviridis
ENSCCAG00000024179	SRP54	100	91.169	ENSTBEG00000011409	SRP54	94	91.169	Tupaia_belangeri
ENSCCAG00000024179	SRP54	100	87.828	ENSTTRG00000000928	SRP54	90	87.619	Tursiops_truncatus
ENSCCAG00000024179	SRP54	100	100.000	ENSUMAG00000011234	SRP54	90	99.762	Ursus_maritimus
ENSCCAG00000024179	SRP54	93	99.743	ENSVPAG00000005668	SRP54	89	99.487	Vicugna_pacos
ENSCCAG00000024179	SRP54	100	100.000	ENSVVUG00000019962	SRP54	90	99.762	Vulpes_vulpes
ENSCCAG00000024179	SRP54	100	81.818	ENSXETG00000012290	srp54	90	81.818	Xenopus_tropicalis
ENSCCAG00000024179	SRP54	86	95.265	ENSXCOG00000004658	srp54	85	95.265	Xiphophorus_couchianus
ENSCCAG00000024179	SRP54	100	95.704	ENSXMAG00000018315	srp54	90	95.476	Xiphophorus_maculatus