EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000024900 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: protein LSM14 homolog B pseudogene
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 2164 bases
Position: chrKV390147.1:324894-327057
Accession: 108296510
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000014198	FDF	PF09532.10	2.3e-20	1	1
ENSCCAP00000014164	FDF	PF09532.10	2.6e-20	1	1
ENSCCAP00000014192	FDF	PF09532.10	2.7e-20	1	1
ENSCCAP00000014198	LSM14	PF12701.7	1.6e-09	1	1
ENSCCAP00000014192	LSM14	PF12701.7	1.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000031636	-	1200	-	ENSCCAP00000014198	399 (aa)	-	A0A2K5QE74
ENSCCAT00000031602	-	897	-	ENSCCAP00000014164	298 (aa)	-	A0A2K5QE63
ENSCCAT00000031630	-	1308	-	ENSCCAP00000014192	435 (aa)	-	A0A2K5QE71

Gene Model

Click here to download ENSCCAG00000024900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000024900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000024900	-	69	44.681	ENSCCAG00000037290	-	85	45.161
ENSCCAG00000024900	-	58	73.810	ENSCCAG00000037033	-	85	37.427
ENSCCAG00000024900	-	66	51.064	ENSCCAG00000028536	-	93	51.613
ENSCCAG00000024900	-	79	85.185	ENSCCAG00000021267	LSM14B	100	71.318
ENSCCAG00000024900	-	69	47.872	ENSCCAG00000038098	-	92	49.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000024900	-	79	82.716	ENSG00000149657	LSM14B	100	77.075	Homo_sapiens
ENSCCAG00000024900	-	76	38.933	ENSAPOG00000001780	lsm14b	92	40.274	Acanthochromis_polyacanthus
ENSCCAG00000024900	-	99	75.974	ENSAMEG00000013430	LSM14B	100	68.085	Ailuropoda_melanoleuca
ENSCCAG00000024900	-	75	37.255	ENSACIG00000012266	lsm14b	92	37.288	Amphilophus_citrinellus
ENSCCAG00000024900	-	76	38.786	ENSAOCG00000012380	lsm14b	92	39.945	Amphiprion_ocellaris
ENSCCAG00000024900	-	89	36.577	ENSAOCG00000006667	LSM14B	90	37.151	Amphiprion_ocellaris
ENSCCAG00000024900	-	73	35.328	ENSAPEG00000023633	lsm14b	92	37.151	Amphiprion_percula
ENSCCAG00000024900	-	76	37.669	ENSATEG00000016603	lsm14b	92	38.483	Anabas_testudineus
ENSCCAG00000024900	-	99	69.355	ENSAPLG00000013203	LSM14B	91	65.546	Anas_platyrhynchos
ENSCCAG00000024900	-	79	66.667	ENSACAG00000016195	LSM14B	91	57.584	Anolis_carolinensis
ENSCCAG00000024900	-	100	80.645	ENSANAG00000037915	LSM14B	100	72.877	Aotus_nancymaae
ENSCCAG00000024900	-	59	46.591	ENSACLG00000013004	-	69	37.615	Astatotilapia_calliptera
ENSCCAG00000024900	-	74	35.215	ENSACLG00000019663	lsm14b	91	37.396	Astatotilapia_calliptera
ENSCCAG00000024900	-	75	43.850	ENSAMXG00000002865	lsm14b	92	44.444	Astyanax_mexicanus
ENSCCAG00000024900	-	99	74.675	ENSBTAG00000021558	LSM14B	100	68.396	Bos_taurus
ENSCCAG00000024900	-	100	80.968	ENSCJAG00000014434	LSM14B	100	72.642	Callithrix_jacchus
ENSCCAG00000024900	-	99	75.974	ENSCAFG00000012518	LSM14B	91	71.831	Canis_familiaris
ENSCCAG00000024900	-	99	75.974	ENSCAFG00020022150	LSM14B	100	69.340	Canis_lupus_dingo
ENSCCAG00000024900	-	99	76.299	ENSCHIG00000010284	-	100	69.575	Capra_hircus
ENSCCAG00000024900	-	89	60.741	ENSCHIG00000022681	-	98	54.891	Capra_hircus
ENSCCAG00000024900	-	79	80.247	ENSTSYG00000031914	LSM14B	82	70.755	Carlito_syrichta
ENSCCAG00000024900	-	99	76.299	ENSCAPG00000013059	LSM14B	99	76.547	Cavia_aperea
ENSCCAG00000024900	-	99	76.299	ENSCPOG00000038080	LSM14B	99	76.547	Cavia_porcellus
ENSCCAG00000024900	-	100	79.355	ENSCATG00000036006	LSM14B	100	71.934	Cercocebus_atys
ENSCCAG00000024900	-	99	76.623	ENSCLAG00000003186	LSM14B	99	76.873	Chinchilla_lanigera
ENSCCAG00000024900	-	100	79.355	ENSCSAG00000015729	LSM14B	100	71.934	Chlorocebus_sabaeus
ENSCCAG00000024900	-	99	57.000	ENSCHOG00000006997	-	94	58.304	Choloepus_hoffmanni
ENSCCAG00000024900	-	83	71.984	ENSCPBG00000027065	LSM14B	99	63.593	Chrysemys_picta_bellii
ENSCCAG00000024900	-	79	83.128	ENSCANG00000036986	LSM14B	92	72.956	Colobus_angolensis_palliatus
ENSCCAG00000024900	-	99	77.597	ENSCGRG00001018399	Lsm14b	99	77.597	Cricetulus_griseus_chok1gshd
ENSCCAG00000024900	-	79	72.840	ENSCGRG00000002484	-	100	71.193	Cricetulus_griseus_crigri
ENSCCAG00000024900	-	97	77.409	ENSCGRG00000006111	-	99	77.409	Cricetulus_griseus_crigri
ENSCCAG00000024900	-	75	36.533	ENSCSEG00000004722	lsm14b	91	37.673	Cynoglossus_semilaevis
ENSCCAG00000024900	-	80	37.065	ENSCSEG00000020669	LSM14B	92	35.405	Cynoglossus_semilaevis
ENSCCAG00000024900	-	62	36.979	ENSCVAG00000012433	-	55	39.683	Cyprinodon_variegatus
ENSCCAG00000024900	-	83	39.196	ENSDARG00000025386	lsm14b	92	40.710	Danio_rerio
ENSCCAG00000024900	-	99	74.675	ENSDNOG00000025246	LSM14B	93	79.649	Dasypus_novemcinctus
ENSCCAG00000024900	-	99	75.896	ENSDORG00000016683	Lsm14b	94	80.070	Dipodomys_ordii
ENSCCAG00000024900	-	83	63.077	ENSETEG00000001869	-	99	54.111	Echinops_telfairi
ENSCCAG00000024900	-	65	69.417	ENSETEG00000011188	-	82	72.917	Echinops_telfairi
ENSCCAG00000024900	-	99	75.000	ENSEASG00005023218	LSM14B	93	80.000	Equus_asinus_asinus
ENSCCAG00000024900	-	99	75.325	ENSECAG00000010659	LSM14B	100	68.868	Equus_caballus
ENSCCAG00000024900	-	79	40.526	ENSELUG00000005780	lsm14b	92	42.297	Esox_lucius
ENSCCAG00000024900	-	75	36.639	ENSELUG00000016299	LSM14B	92	37.709	Esox_lucius
ENSCCAG00000024900	-	84	76.136	ENSFCAG00000003248	LSM14B	100	67.442	Felis_catus
ENSCCAG00000024900	-	99	68.489	ENSFALG00000010618	LSM14B	93	64.804	Ficedula_albicollis
ENSCCAG00000024900	-	99	76.623	ENSFDAG00000002214	LSM14B	99	76.623	Fukomys_damarensis
ENSCCAG00000024900	-	62	30.031	ENSFHEG00000003362	LSM14B	72	32.404	Fundulus_heteroclitus
ENSCCAG00000024900	-	84	35.309	ENSFHEG00000006237	lsm14b	92	35.833	Fundulus_heteroclitus
ENSCCAG00000024900	-	83	34.726	ENSGMOG00000017115	lsm14b	91	39.003	Gadus_morhua
ENSCCAG00000024900	-	99	65.605	ENSGALG00000005125	LSM14B	99	62.529	Gallus_gallus
ENSCCAG00000024900	-	63	42.408	ENSGAFG00000013723	LSM14B	78	36.364	Gambusia_affinis
ENSCCAG00000024900	-	57	47.423	ENSGAFG00000020318	lsm14b	63	48.958	Gambusia_affinis
ENSCCAG00000024900	-	76	37.922	ENSGACG00000009973	lsm14b	92	39.779	Gasterosteus_aculeatus
ENSCCAG00000024900	-	79	72.245	ENSGAGG00000004106	LSM14B	94	72.245	Gopherus_agassizii
ENSCCAG00000024900	-	100	79.355	ENSGGOG00000005630	LSM14B	93	84.912	Gorilla_gorilla
ENSCCAG00000024900	-	99	77.597	ENSHGLG00000015055	LSM14B	99	77.597	Heterocephalus_glaber_female
ENSCCAG00000024900	-	99	78.289	ENSHGLG00100015273	LSM14B	95	82.168	Heterocephalus_glaber_male
ENSCCAG00000024900	-	67	39.512	ENSHCOG00000004867	lsm14b	78	40.092	Hippocampus_comes
ENSCCAG00000024900	-	80	36.548	ENSHCOG00000018747	LSM14B	92	37.006	Hippocampus_comes
ENSCCAG00000024900	-	76	44.022	ENSIPUG00000014946	lsm14b	87	43.944	Ictalurus_punctatus
ENSCCAG00000024900	-	99	78.896	ENSSTOG00000020482	LSM14B	99	78.896	Ictidomys_tridecemlineatus
ENSCCAG00000024900	-	99	75.974	ENSJJAG00000012728	Lsm14b	99	75.974	Jaculus_jaculus
ENSCCAG00000024900	-	76	36.388	ENSKMAG00000017524	lsm14b	93	37.569	Kryptolebias_marmoratus
ENSCCAG00000024900	-	50	42.667	ENSLBEG00000007951	LSM14B	53	45.455	Labrus_bergylta
ENSCCAG00000024900	-	82	58.431	ENSLACG00000003849	LSM14B	99	53.066	Latimeria_chalumnae
ENSCCAG00000024900	-	82	44.615	ENSLOCG00000003746	lsm14b	99	44.615	Lepisosteus_oculatus
ENSCCAG00000024900	-	84	73.864	ENSLAFG00000007492	LSM14B	91	67.925	Loxodonta_africana
ENSCCAG00000024900	-	100	79.677	ENSMFAG00000041479	LSM14B	100	72.170	Macaca_fascicularis
ENSCCAG00000024900	-	79	83.128	ENSMMUG00000014084	LSM14B	100	70.026	Macaca_mulatta
ENSCCAG00000024900	-	79	83.128	ENSMNEG00000045573	LSM14B	100	70.026	Macaca_nemestrina
ENSCCAG00000024900	-	79	82.716	ENSMLEG00000040895	LSM14B	92	72.642	Mandrillus_leucophaeus
ENSCCAG00000024900	-	83	36.029	ENSMAMG00000024124	LSM14B	92	35.393	Mastacembelus_armatus
ENSCCAG00000024900	-	76	36.043	ENSMAMG00000020539	lsm14b	92	38.567	Mastacembelus_armatus
ENSCCAG00000024900	-	74	35.753	ENSMZEG00005000987	lsm14b	91	37.950	Maylandia_zebra
ENSCCAG00000024900	-	73	34.316	ENSMZEG00005026001	LSM14B	94	34.530	Maylandia_zebra
ENSCCAG00000024900	-	84	63.333	ENSMGAG00000005300	LSM14B	90	60.559	Meleagris_gallopavo
ENSCCAG00000024900	-	99	77.273	ENSMAUG00000020700	Lsm14b	99	77.273	Mesocricetus_auratus
ENSCCAG00000024900	-	99	79.221	ENSMICG00000014675	LSM14B	100	70.991	Microcebus_murinus
ENSCCAG00000024900	-	99	76.623	ENSMOCG00000020600	Lsm14b	99	76.623	Microtus_ochrogaster
ENSCCAG00000024900	-	89	65.455	ENSMOCG00000005119	-	77	68.142	Microtus_ochrogaster
ENSCCAG00000024900	-	75	37.190	ENSMMOG00000020042	lsm14b	95	37.714	Mola_mola
ENSCCAG00000024900	-	75	37.571	ENSMMOG00000017321	LSM14B	90	37.079	Mola_mola
ENSCCAG00000024900	-	99	71.104	ENSMODG00000016690	LSM14B	94	75.524	Monodelphis_domestica
ENSCCAG00000024900	-	77	35.696	ENSMALG00000022251	LSM14B	92	36.264	Monopterus_albus
ENSCCAG00000024900	-	79	39.084	ENSMALG00000004783	lsm14b	92	37.941	Monopterus_albus
ENSCCAG00000024900	-	99	76.948	MGP_CAROLIEiJ_G0024770	Lsm14b	100	69.811	Mus_caroli
ENSCCAG00000024900	-	99	77.273	ENSMUSG00000039108	Lsm14b	99	77.273	Mus_musculus
ENSCCAG00000024900	-	99	76.623	MGP_PahariEiJ_G0026214	Lsm14b	100	69.575	Mus_pahari
ENSCCAG00000024900	-	99	77.273	MGP_SPRETEiJ_G0025693	Lsm14b	100	70.047	Mus_spretus
ENSCCAG00000024900	-	99	74.351	ENSMPUG00000007584	LSM14B	88	70.822	Mustela_putorius_furo
ENSCCAG00000024900	-	84	75.472	ENSMLUG00000000304	LSM14B	100	67.358	Myotis_lucifugus
ENSCCAG00000024900	-	74	77.922	ENSNGAG00000016550	Lsm14b	100	78.355	Nannospalax_galili
ENSCCAG00000024900	-	79	82.305	ENSNLEG00000015757	LSM14B	92	72.013	Nomascus_leucogenys
ENSCCAG00000024900	-	62	79.085	ENSMEUG00000008267	-	64	79.085	Notamacropus_eugenii
ENSCCAG00000024900	-	99	78.247	ENSODEG00000004099	LSM14B	99	78.247	Octodon_degus
ENSCCAG00000024900	-	74	36.761	ENSONIG00000020318	lsm14b	92	38.275	Oreochromis_niloticus
ENSCCAG00000024900	-	60	56.721	ENSOANG00000003370	LSM14B	77	72.727	Ornithorhynchus_anatinus
ENSCCAG00000024900	-	79	79.835	ENSOCUG00000006279	LSM14B	92	68.553	Oryctolagus_cuniculus
ENSCCAG00000024900	-	76	36.364	ENSORLG00000013525	lsm14b	92	38.440	Oryzias_latipes
ENSCCAG00000024900	-	76	35.040	ENSORLG00000028353	LSM14B	90	33.811	Oryzias_latipes
ENSCCAG00000024900	-	76	36.364	ENSORLG00020020553	lsm14b	92	38.440	Oryzias_latipes_hni
ENSCCAG00000024900	-	76	36.364	ENSORLG00015016862	lsm14b	92	38.440	Oryzias_latipes_hsok
ENSCCAG00000024900	-	76	35.040	ENSORLG00015013157	LSM14B	90	33.238	Oryzias_latipes_hsok
ENSCCAG00000024900	-	76	36.364	ENSOMEG00000023917	lsm14b	92	38.162	Oryzias_melastigma
ENSCCAG00000024900	-	99	77.597	ENSOGAG00000003915	LSM14B	100	70.283	Otolemur_garnettii
ENSCCAG00000024900	-	99	75.974	ENSOARG00000014706	LSM14B	91	71.831	Ovis_aries
ENSCCAG00000024900	-	79	82.716	ENSPPAG00000035799	LSM14B	86	72.642	Pan_paniscus
ENSCCAG00000024900	-	84	75.758	ENSPPRG00000009197	LSM14B	100	67.183	Panthera_pardus
ENSCCAG00000024900	-	96	75.251	ENSPTIG00000021518	LSM14B	94	80.144	Panthera_tigris_altaica
ENSCCAG00000024900	-	79	82.716	ENSPTRG00000013696	LSM14B	100	69.767	Pan_troglodytes
ENSCCAG00000024900	-	79	82.716	ENSPANG00000011747	LSM14B	100	69.767	Papio_anubis
ENSCCAG00000024900	-	78	46.559	ENSPKIG00000003275	lsm14b	86	54.839	Paramormyrops_kingsleyae
ENSCCAG00000024900	-	99	67.961	ENSPSIG00000014762	LSM14B	94	72.125	Pelodiscus_sinensis
ENSCCAG00000024900	-	99	77.597	ENSPEMG00000017688	Lsm14b	99	77.597	Peromyscus_maniculatus_bairdii
ENSCCAG00000024900	-	79	74.074	ENSPCIG00000013405	LSM14B	100	63.566	Phascolarctos_cinereus
ENSCCAG00000024900	-	83	38.718	ENSPFOG00000005631	lsm14b	92	38.268	Poecilia_formosa
ENSCCAG00000024900	-	83	38.718	ENSPLAG00000002449	lsm14b	92	38.268	Poecilia_latipinna
ENSCCAG00000024900	-	74	35.795	ENSPLAG00000005793	LSM14B	90	35.511	Poecilia_latipinna
ENSCCAG00000024900	-	74	35.429	ENSPMEG00000022953	LSM14B	90	34.463	Poecilia_mexicana
ENSCCAG00000024900	-	75	38.827	ENSPMEG00000000745	lsm14b	92	38.268	Poecilia_mexicana
ENSCCAG00000024900	-	58	34.286	ENSPREG00000007828	LSM14B	66	36.979	Poecilia_reticulata
ENSCCAG00000024900	-	100	64.145	ENSPPYG00000011194	LSM14B	100	58.852	Pongo_abelii
ENSCCAG00000024900	-	79	81.893	ENSPCOG00000013625	LSM14B	100	69.251	Propithecus_coquereli
ENSCCAG00000024900	-	99	60.535	ENSPVAG00000017918	LSM14B	100	56.845	Pteropus_vampyrus
ENSCCAG00000024900	-	75	43.836	ENSPNAG00000012777	lsm14b	99	44.757	Pygocentrus_nattereri
ENSCCAG00000024900	-	99	76.623	ENSRNOG00000054557	Lsm14b	100	69.340	Rattus_norvegicus
ENSCCAG00000024900	-	100	79.355	ENSRBIG00000033461	LSM14B	92	74.930	Rhinopithecus_bieti
ENSCCAG00000024900	-	100	79.677	ENSRROG00000042949	LSM14B	100	79.677	Rhinopithecus_roxellana
ENSCCAG00000024900	-	100	77.399	ENSSBOG00000032820	LSM14B	94	81.457	Saimiri_boliviensis_boliviensis
ENSCCAG00000024900	-	99	71.429	ENSSHAG00000015528	LSM14B	94	75.874	Sarcophilus_harrisii
ENSCCAG00000024900	-	75	44.011	ENSSFOG00015004627	lsm14b	92	44.669	Scleropages_formosus
ENSCCAG00000024900	-	76	37.302	ENSSMAG00000012725	lsm14b	92	37.366	Scophthalmus_maximus
ENSCCAG00000024900	-	86	38.776	ENSSMAG00000000135	LSM14B	90	36.997	Scophthalmus_maximus
ENSCCAG00000024900	-	77	39.257	ENSSDUG00000022770	LSM14B	92	39.037	Seriola_dumerili
ENSCCAG00000024900	-	76	39.418	ENSSDUG00000020977	lsm14b	92	40.000	Seriola_dumerili
ENSCCAG00000024900	-	58	36.576	ENSSLDG00000011354	-	75	41.475	Seriola_lalandi_dorsalis
ENSCCAG00000024900	-	66	72.947	ENSSARG00000007749	-	100	72.947	Sorex_araneus
ENSCCAG00000024900	-	99	65.916	ENSSPUG00000014360	LSM14B	99	61.085	Sphenodon_punctatus
ENSCCAG00000024900	-	76	38.162	ENSSPAG00000020915	lsm14b	92	38.793	Stegastes_partitus
ENSCCAG00000024900	-	72	36.323	ENSSPAG00000018854	-	76	35.514	Stegastes_partitus
ENSCCAG00000024900	-	99	76.299	ENSSSCG00000026052	LSM14B	99	76.547	Sus_scrofa
ENSCCAG00000024900	-	84	67.041	ENSTGUG00000007884	LSM14B	92	62.617	Taeniopygia_guttata
ENSCCAG00000024900	-	84	36.430	ENSTRUG00000011354	lsm14b	92	34.160	Takifugu_rubripes
ENSCCAG00000024900	-	77	36.364	ENSTRUG00000001529	LSM14B	92	37.736	Takifugu_rubripes
ENSCCAG00000024900	-	77	39.566	ENSTNIG00000002445	lsm14b	93	39.155	Tetraodon_nigroviridis
ENSCCAG00000024900	-	77	85.714	ENSTTRG00000011043	LSM14B	75	85.714	Tursiops_truncatus
ENSCCAG00000024900	-	99	75.974	ENSUAMG00000025298	LSM14B	85	71.831	Ursus_americanus
ENSCCAG00000024900	-	99	75.974	ENSUMAG00000000480	LSM14B	85	71.831	Ursus_maritimus
ENSCCAG00000024900	-	99	75.325	ENSVVUG00000015920	LSM14B	94	80.070	Vulpes_vulpes
ENSCCAG00000024900	-	80	53.360	ENSXETG00000001997	lsm14b	99	51.672	Xenopus_tropicalis
ENSCCAG00000024900	-	76	34.465	ENSXMAG00000010013	lsm14b	92	36.813	Xiphophorus_maculatus