EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000025329 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: HIV Tat-specific factor 1 homolog pseudogene
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 2203 bases
Position: chrKV389509.1:3675666-3677868
Accession: 108308219
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000015067	RRM_1	PF00076.22	1.5e-17	1	2
ENSCCAP00000015067	RRM_1	PF00076.22	1.5e-17	2	2
ENSCCAP00000015060	RRM_1	PF00076.22	1.8e-17	1	2
ENSCCAP00000015060	RRM_1	PF00076.22	1.8e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000032511	-	2034	-	ENSCCAP00000015067	677 (aa)	-	A0A2K5QGQ0
ENSCCAT00000032504	-	2157	-	ENSCCAP00000015060	718 (aa)	-	A0A2K5QGS1

Gene Model

Click here to download ENSCCAG00000025329's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000025329's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000025329	-	99	91.633	ENSCCAG00000022701	-	99	91.633

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000025329	-	99	87.166	ENSG00000102241	HTATSF1	100	93.852	Homo_sapiens
ENSCCAG00000025329	-	60	60.570	ENSAPOG00000009823	htatsf1	79	62.943	Acanthochromis_polyacanthus
ENSCCAG00000025329	-	99	76.610	ENSAMEG00000002921	HTATSF1	99	76.471	Ailuropoda_melanoleuca
ENSCCAG00000025329	-	54	63.496	ENSACIG00000020459	htatsf1	80	63.172	Amphilophus_citrinellus
ENSCCAG00000025329	-	55	62.308	ENSAOCG00000020994	htatsf1	78	61.892	Amphiprion_ocellaris
ENSCCAG00000025329	-	54	62.564	ENSAPEG00000016432	htatsf1	79	61.995	Amphiprion_percula
ENSCCAG00000025329	-	57	58.838	ENSATEG00000008903	htatsf1	82	60.267	Anabas_testudineus
ENSCCAG00000025329	-	95	79.066	ENSANAG00000027986	-	96	79.066	Aotus_nancymaae
ENSCCAG00000025329	-	93	87.914	ENSANAG00000025458	-	99	87.626	Aotus_nancymaae
ENSCCAG00000025329	-	55	62.532	ENSACLG00000008096	htatsf1	81	62.198	Astatotilapia_calliptera
ENSCCAG00000025329	-	55	62.035	ENSAMXG00000008387	htatsf1	78	62.534	Astyanax_mexicanus
ENSCCAG00000025329	-	99	74.609	ENSBTAG00000055212	HTATSF1	99	74.545	Bos_taurus
ENSCCAG00000025329	-	99	74.609	ENSBTAG00000054942	HTATSF1	99	74.545	Bos_taurus
ENSCCAG00000025329	-	99	71.067	ENSBTAG00000032711	HTATSF1	99	73.181	Bos_taurus
ENSCCAG00000025329	-	99	89.623	ENSCJAG00000003676	HTATSF1	99	89.623	Callithrix_jacchus
ENSCCAG00000025329	-	99	78.062	ENSCAFG00000023294	HTATSF1	99	77.912	Canis_familiaris
ENSCCAG00000025329	-	99	76.610	ENSCAFG00020024635	HTATSF1	99	76.340	Canis_lupus_dingo
ENSCCAG00000025329	-	99	76.133	ENSCHIG00000000312	HTATSF1	99	76.064	Capra_hircus
ENSCCAG00000025329	-	99	79.893	ENSTSYG00000028876	HTATSF1	99	80.239	Carlito_syrichta
ENSCCAG00000025329	-	99	87.399	ENSCATG00000029963	HTATSF1	99	87.617	Cercocebus_atys
ENSCCAG00000025329	-	99	72.032	ENSCLAG00000002718	HTATSF1	99	71.900	Chinchilla_lanigera
ENSCCAG00000025329	-	99	87.534	ENSCSAG00000007505	HTATSF1	99	87.750	Chlorocebus_sabaeus
ENSCCAG00000025329	-	55	70.157	ENSCPBG00000026092	HTATSF1	81	74.018	Chrysemys_picta_bellii
ENSCCAG00000025329	-	99	87.802	ENSCANG00000028495	HTATSF1	99	88.016	Colobus_angolensis_palliatus
ENSCCAG00000025329	-	99	74.682	ENSCGRG00001021602	Htatsf1	99	69.821	Cricetulus_griseus_chok1gshd
ENSCCAG00000025329	-	90	67.788	ENSCGRG00000002085	Htatsf1	99	63.978	Cricetulus_griseus_crigri
ENSCCAG00000025329	-	54	64.508	ENSCVAG00000014070	htatsf1	80	63.587	Cyprinodon_variegatus
ENSCCAG00000025329	-	54	60.105	ENSDARG00000056649	htatsf1	79	59.669	Danio_rerio
ENSCCAG00000025329	-	89	78.115	ENSDNOG00000002254	HTATSF1	99	75.623	Dasypus_novemcinctus
ENSCCAG00000025329	-	99	41.033	ENSETEG00000006377	-	72	45.539	Echinops_telfairi
ENSCCAG00000025329	-	57	49.644	ENSEBUG00000001534	htatsf1	80	50.864	Eptatretus_burgeri
ENSCCAG00000025329	-	99	75.457	ENSEASG00005003440	HTATSF1	99	76.203	Equus_asinus_asinus
ENSCCAG00000025329	-	99	75.457	ENSECAG00000009156	HTATSF1	99	76.203	Equus_caballus
ENSCCAG00000025329	-	99	63.937	ENSEEUG00000010668	HTATSF1	99	64.163	Erinaceus_europaeus
ENSCCAG00000025329	-	54	60.052	ENSELUG00000005486	htatsf1	70	61.389	Esox_lucius
ENSCCAG00000025329	-	100	78.046	ENSFCAG00000031924	HTATSF1	99	78.179	Felis_catus
ENSCCAG00000025329	-	54	68.435	ENSFALG00000003728	HTATSF1	79	67.409	Ficedula_albicollis
ENSCCAG00000025329	-	99	70.596	ENSFDAG00000008617	HTATSF1	99	71.014	Fukomys_damarensis
ENSCCAG00000025329	-	56	63.910	ENSFHEG00000020286	htatsf1	83	63.660	Fundulus_heteroclitus
ENSCCAG00000025329	-	51	62.117	ENSGMOG00000016444	htatsf1	99	62.117	Gadus_morhua
ENSCCAG00000025329	-	54	67.895	ENSGALG00000006410	HTATSF1	78	67.680	Gallus_gallus
ENSCCAG00000025329	-	55	63.265	ENSGAFG00000003041	htatsf1	79	62.973	Gambusia_affinis
ENSCCAG00000025329	-	54	61.818	ENSGACG00000020459	htatsf1	81	61.035	Gasterosteus_aculeatus
ENSCCAG00000025329	-	99	87.166	ENSGGOG00000026072	HTATSF1	99	87.483	Gorilla_gorilla
ENSCCAG00000025329	-	55	62.278	ENSHBUG00000004392	htatsf1	81	61.930	Haplochromis_burtoni
ENSCCAG00000025329	-	98	72.349	ENSHGLG00000005328	HTATSF1	99	72.944	Heterocephalus_glaber_female
ENSCCAG00000025329	-	54	61.458	ENSHCOG00000009056	htatsf1	89	60.305	Hippocampus_comes
ENSCCAG00000025329	-	54	64.628	ENSIPUG00000017828	htatsf1	75	64.525	Ictalurus_punctatus
ENSCCAG00000025329	-	99	76.081	ENSSTOG00000012505	HTATSF1	99	75.953	Ictidomys_tridecemlineatus
ENSCCAG00000025329	-	57	61.962	ENSKMAG00000007622	htatsf1	80	63.957	Kryptolebias_marmoratus
ENSCCAG00000025329	-	54	63.446	ENSLBEG00000001154	htatsf1	79	62.740	Labrus_bergylta
ENSCCAG00000025329	-	54	64.829	ENSLACG00000015989	HTATSF1	79	64.463	Latimeria_chalumnae
ENSCCAG00000025329	-	55	41.791	ENSLOCG00000015118	htatsf1	81	41.710	Lepisosteus_oculatus
ENSCCAG00000025329	-	99	73.699	ENSLAFG00000014307	HTATSF1	99	71.272	Loxodonta_africana
ENSCCAG00000025329	-	99	87.265	ENSMFAG00000044705	HTATSF1	99	87.483	Macaca_fascicularis
ENSCCAG00000025329	-	99	87.265	ENSMMUG00000006450	HTATSF1	99	87.483	Macaca_mulatta
ENSCCAG00000025329	-	99	79.376	ENSMNEG00000024084	HTATSF1	99	80.863	Macaca_nemestrina
ENSCCAG00000025329	-	99	87.131	ENSMLEG00000035511	HTATSF1	99	87.350	Mandrillus_leucophaeus
ENSCCAG00000025329	-	54	62.629	ENSMAMG00000021225	htatsf1	81	62.228	Mastacembelus_armatus
ENSCCAG00000025329	-	55	62.532	ENSMZEG00005000485	htatsf1	81	62.198	Maylandia_zebra
ENSCCAG00000025329	-	99	69.474	ENSMAUG00000007235	Htatsf1	99	70.395	Mesocricetus_auratus
ENSCCAG00000025329	-	100	79.283	ENSMICG00000009348	HTATSF1	100	80.933	Microcebus_murinus
ENSCCAG00000025329	-	99	70.013	ENSMOCG00000023007	-	99	69.582	Microtus_ochrogaster
ENSCCAG00000025329	-	99	69.064	ENSMOCG00000022370	-	95	69.410	Microtus_ochrogaster
ENSCCAG00000025329	-	55	60.152	ENSMMOG00000011013	htatsf1	87	60.152	Mola_mola
ENSCCAG00000025329	-	58	67.669	ENSMODG00000014087	-	78	69.061	Monodelphis_domestica
ENSCCAG00000025329	-	60	57.604	ENSMALG00000019977	htatsf1	94	57.011	Monopterus_albus
ENSCCAG00000025329	-	99	70.066	MGP_CAROLIEiJ_G0033094	Htatsf1	99	69.801	Mus_caroli
ENSCCAG00000025329	-	97	71.973	ENSMUSG00000067873	Htatsf1	99	70.812	Mus_musculus
ENSCCAG00000025329	-	97	71.837	MGP_SPRETEiJ_G0034249	Htatsf1	99	70.681	Mus_spretus
ENSCCAG00000025329	-	100	75.817	ENSMPUG00000001901	HTATSF1	99	75.556	Mustela_putorius_furo
ENSCCAG00000025329	-	99	70.014	ENSMLUG00000009234	-	98	70.516	Myotis_lucifugus
ENSCCAG00000025329	-	99	72.016	ENSMLUG00000028418	-	99	73.123	Myotis_lucifugus
ENSCCAG00000025329	-	96	75.982	ENSNGAG00000017831	Htatsf1	99	72.776	Nannospalax_galili
ENSCCAG00000025329	-	54	63.171	ENSNBRG00000003818	htatsf1	81	62.466	Neolamprologus_brichardi
ENSCCAG00000025329	-	99	87.265	ENSNLEG00000002746	HTATSF1	99	87.984	Nomascus_leucogenys
ENSCCAG00000025329	-	58	67.677	ENSMEUG00000004133	-	86	68.820	Notamacropus_eugenii
ENSCCAG00000025329	-	54	63.520	ENSONIG00000008638	htatsf1	81	62.834	Oreochromis_niloticus
ENSCCAG00000025329	-	51	72.126	ENSOANG00000011674	-	76	74.277	Ornithorhynchus_anatinus
ENSCCAG00000025329	-	99	75.462	ENSOCUG00000012570	HTATSF1	99	77.045	Oryctolagus_cuniculus
ENSCCAG00000025329	-	58	60.145	ENSORLG00000002356	htatsf1	84	62.916	Oryzias_latipes
ENSCCAG00000025329	-	58	60.386	ENSORLG00020017818	htatsf1	81	63.171	Oryzias_latipes_hni
ENSCCAG00000025329	-	55	62.660	ENSORLG00015002268	htatsf1	84	62.660	Oryzias_latipes_hsok
ENSCCAG00000025329	-	58	60.048	ENSOMEG00000007564	htatsf1	80	62.198	Oryzias_melastigma
ENSCCAG00000025329	-	98	76.312	ENSOGAG00000005565	HTATSF1	99	77.188	Otolemur_garnettii
ENSCCAG00000025329	-	99	74.219	ENSOARG00000011215	-	99	74.156	Ovis_aries
ENSCCAG00000025329	-	99	70.964	ENSOARG00000000481	-	99	71.615	Ovis_aries
ENSCCAG00000025329	-	99	87.299	ENSPPAG00000024268	HTATSF1	99	87.617	Pan_paniscus
ENSCCAG00000025329	-	100	78.581	ENSPPRG00000014209	HTATSF1	99	78.715	Panthera_pardus
ENSCCAG00000025329	-	92	77.746	ENSPTIG00000016887	HTATSF1	96	77.457	Panthera_tigris_altaica
ENSCCAG00000025329	-	99	87.299	ENSPTRG00000044591	HTATSF1	99	87.617	Pan_troglodytes
ENSCCAG00000025329	-	99	75.368	ENSPANG00000010946	HTATSF1	99	75.665	Papio_anubis
ENSCCAG00000025329	-	55	64.879	ENSPKIG00000024852	htatsf1	78	64.225	Paramormyrops_kingsleyae
ENSCCAG00000025329	-	55	62.944	ENSPMGG00000006172	htatsf1	86	62.944	Periophthalmus_magnuspinnatus
ENSCCAG00000025329	-	97	69.501	ENSPEMG00000022397	Htatsf1	99	69.725	Peromyscus_maniculatus_bairdii
ENSCCAG00000025329	-	63	62.929	ENSPCIG00000030173	-	83	68.144	Phascolarctos_cinereus
ENSCCAG00000025329	-	58	64.824	ENSPCIG00000018896	-	80	66.480	Phascolarctos_cinereus
ENSCCAG00000025329	-	55	63.520	ENSPFOG00000007871	htatsf1	78	63.243	Poecilia_formosa
ENSCCAG00000025329	-	57	61.576	ENSPLAG00000007532	htatsf1	81	62.703	Poecilia_latipinna
ENSCCAG00000025329	-	55	63.520	ENSPMEG00000000352	htatsf1	81	63.243	Poecilia_mexicana
ENSCCAG00000025329	-	55	63.776	ENSPREG00000007811	htatsf1	81	63.514	Poecilia_reticulata
ENSCCAG00000025329	-	94	87.043	ENSPPYG00000020765	HTATSF1	88	86.405	Pongo_abelii
ENSCCAG00000025329	-	98	67.181	ENSPCAG00000010576	HTATSF1	99	65.807	Procavia_capensis
ENSCCAG00000025329	-	99	81.092	ENSPCOG00000021823	HTATSF1	99	81.758	Propithecus_coquereli
ENSCCAG00000025329	-	99	70.875	ENSPVAG00000010281	HTATSF1	99	71.218	Pteropus_vampyrus
ENSCCAG00000025329	-	55	62.532	ENSPNYG00000016693	htatsf1	81	62.198	Pundamilia_nyererei
ENSCCAG00000025329	-	54	65.041	ENSPNAG00000006166	htatsf1	78	64.387	Pygocentrus_nattereri
ENSCCAG00000025329	-	89	75.637	ENSRNOG00000027761	Htatsf1	99	69.330	Rattus_norvegicus
ENSCCAG00000025329	-	99	77.748	ENSRBIG00000035486	HTATSF1	99	77.261	Rhinopithecus_bieti
ENSCCAG00000025329	-	99	87.534	ENSRROG00000021939	HTATSF1	99	87.750	Rhinopithecus_roxellana
ENSCCAG00000025329	-	99	90.476	ENSSBOG00000027186	-	99	90.811	Saimiri_boliviensis_boliviensis
ENSCCAG00000025329	-	100	87.785	ENSSBOG00000017914	-	100	88.054	Saimiri_boliviensis_boliviensis
ENSCCAG00000025329	-	56	67.895	ENSSHAG00000006440	-	89	68.768	Sarcophilus_harrisii
ENSCCAG00000025329	-	60	65.450	ENSSHAG00000018908	-	78	69.122	Sarcophilus_harrisii
ENSCCAG00000025329	-	56	62.435	ENSSFOG00015012002	htatsf1	81	62.402	Scleropages_formosus
ENSCCAG00000025329	-	55	63.660	ENSSMAG00000002970	htatsf1	78	62.192	Scophthalmus_maximus
ENSCCAG00000025329	-	52	62.299	ENSSDUG00000020002	htatsf1	87	60.904	Seriola_dumerili
ENSCCAG00000025329	-	59	58.685	ENSSLDG00000016880	htatsf1	85	62.148	Seriola_lalandi_dorsalis
ENSCCAG00000025329	-	99	61.989	ENSSARG00000005193	HTATSF1	98	61.664	Sorex_araneus
ENSCCAG00000025329	-	61	61.882	ENSSPUG00000014767	HTATSF1	79	65.847	Sphenodon_punctatus
ENSCCAG00000025329	-	54	62.274	ENSSPAG00000000732	htatsf1	79	61.518	Stegastes_partitus
ENSCCAG00000025329	-	99	69.799	ENSSSCG00000023062	HTATSF1	99	70.227	Sus_scrofa
ENSCCAG00000025329	-	54	63.049	ENSTRUG00000013383	htatsf1	82	62.331	Takifugu_rubripes
ENSCCAG00000025329	-	55	61.069	ENSTNIG00000016140	htatsf1	83	60.533	Tetraodon_nigroviridis
ENSCCAG00000025329	-	93	70.579	ENSTTRG00000002269	HTATSF1	99	69.764	Tursiops_truncatus
ENSCCAG00000025329	-	100	78.610	ENSUAMG00000012048	HTATSF1	99	78.610	Ursus_americanus
ENSCCAG00000025329	-	100	76.863	ENSUMAG00000010393	HTATSF1	99	76.863	Ursus_maritimus
ENSCCAG00000025329	-	91	70.435	ENSVPAG00000004569	HTATSF1	99	71.140	Vicugna_pacos
ENSCCAG00000025329	-	99	76.478	ENSVVUG00000024802	HTATSF1	99	76.209	Vulpes_vulpes
ENSCCAG00000025329	-	54	65.354	ENSXETG00000019749	htatsf1	67	64.820	Xenopus_tropicalis
ENSCCAG00000025329	-	55	64.815	ENSXCOG00000006912	htatsf1	81	64.607	Xiphophorus_couchianus
ENSCCAG00000025329	-	55	64.921	ENSXMAG00000000490	htatsf1	81	64.722	Xiphophorus_maculatus