EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000027199 (Gene tree)
Gene ID: 108309628
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 138426 bases
Position: chrKV389521.1:6559190-6697615
Accession: 108309628
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000018770	R3H	PF01424.22	2.5e-11	1	1
ENSCCAP00000018781	R3H	PF01424.22	2.8e-11	1	1
ENSCCAP00000018765	R3H	PF01424.22	3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000036247	R3HDM1-202	6287	XM_017536049	ENSCCAP00000018770	971 (aa)	XP_017391538	A0A2K5QSG3
ENSCCAT00000036242	R3HDM1-201	6672	XM_017536043	ENSCCAP00000018765	1099 (aa)	XP_017391532	A0A2K5QSF8
ENSCCAT00000036258	R3HDM1-203	3135	XM_017536058	ENSCCAP00000018781	1044 (aa)	XP_017391547	A0A2K5QSB9
ENSCCAT00000036269	R3HDM1-204	1371	-	ENSCCAP00000018792	456 (aa)	-	A0A2K5QSC0

Gene Model

Click here to download ENSCCAG00000027199's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000027199's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000027199	R3HDM1	89	47.285	ENSCCAG00000026083	R3HDM2	94	57.178
ENSCCAG00000027199	R3HDM1	69	50.189	ENSCCAG00000032940	ARPP21	92	49.811

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000027199	R3HDM1	100	98.180	ENSG00000048991	R3HDM1	99	100.000	Homo_sapiens
ENSCCAG00000027199	R3HDM1	88	62.933	ENSAPOG00000020850	r3hdm1	92	62.933	Acanthochromis_polyacanthus
ENSCCAG00000027199	R3HDM1	100	95.195	ENSAMEG00000014886	R3HDM1	100	95.195	Ailuropoda_melanoleuca
ENSCCAG00000027199	R3HDM1	87	57.598	ENSAOCG00000005192	r3hdm1	95	57.598	Amphiprion_ocellaris
ENSCCAG00000027199	R3HDM1	87	62.667	ENSAPEG00000016108	r3hdm1	95	62.667	Amphiprion_percula
ENSCCAG00000027199	R3HDM1	87	62.634	ENSATEG00000000232	r3hdm1	88	62.617	Anabas_testudineus
ENSCCAG00000027199	R3HDM1	100	78.229	ENSAPLG00000015231	R3HDM1	100	78.410	Anas_platyrhynchos
ENSCCAG00000027199	R3HDM1	100	76.028	ENSACAG00000001676	R3HDM1	100	76.990	Anolis_carolinensis
ENSCCAG00000027199	R3HDM1	100	98.947	ENSANAG00000035334	R3HDM1	100	98.947	Aotus_nancymaae
ENSCCAG00000027199	R3HDM1	87	62.133	ENSACLG00000027282	r3hdm1	94	62.133	Astatotilapia_calliptera
ENSCCAG00000027199	R3HDM1	53	59.514	ENSAMXG00000020587	arpp21	85	39.469	Astyanax_mexicanus
ENSCCAG00000027199	R3HDM1	89	78.261	ENSAMXG00000012861	R3HDM1	100	60.492	Astyanax_mexicanus
ENSCCAG00000027199	R3HDM1	88	74.367	ENSAMXG00000003536	r3hdm1	91	72.861	Astyanax_mexicanus
ENSCCAG00000027199	R3HDM1	100	93.322	ENSBTAG00000013302	R3HDM1	100	91.293	Bos_taurus
ENSCCAG00000027199	R3HDM1	100	98.755	ENSCJAG00000011718	R3HDM1	100	98.755	Callithrix_jacchus
ENSCCAG00000027199	R3HDM1	100	95.467	ENSCAFG00000005075	R3HDM1	100	95.467	Canis_familiaris
ENSCCAG00000027199	R3HDM1	100	95.554	ENSCAFG00020016119	R3HDM1	100	95.554	Canis_lupus_dingo
ENSCCAG00000027199	R3HDM1	100	93.744	ENSCHIG00000020851	R3HDM1	100	93.835	Capra_hircus
ENSCCAG00000027199	R3HDM1	100	88.840	ENSCPOG00000012784	R3HDM1	100	92.616	Cavia_porcellus
ENSCCAG00000027199	R3HDM1	100	97.970	ENSCATG00000023642	R3HDM1	100	97.636	Cercocebus_atys
ENSCCAG00000027199	R3HDM1	100	88.918	ENSCLAG00000007962	R3HDM1	100	93.827	Chinchilla_lanigera
ENSCCAG00000027199	R3HDM1	100	94.709	ENSCSAG00000016356	R3HDM1	100	94.709	Chlorocebus_sabaeus
ENSCCAG00000027199	R3HDM1	80	93.939	ENSCHOG00000013638	R3HDM1	81	94.118	Choloepus_hoffmanni
ENSCCAG00000027199	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSCCAG00000027199	R3HDM1	100	97.548	ENSCANG00000034748	R3HDM1	100	97.548	Colobus_angolensis_palliatus
ENSCCAG00000027199	R3HDM1	99	88.526	ENSCGRG00001012357	R3hdm1	97	88.526	Cricetulus_griseus_chok1gshd
ENSCCAG00000027199	R3HDM1	99	91.174	ENSCGRG00000012080	R3hdm1	100	93.416	Cricetulus_griseus_crigri
ENSCCAG00000027199	R3HDM1	81	65.472	ENSCSEG00000008944	r3hdm1	82	65.472	Cynoglossus_semilaevis
ENSCCAG00000027199	R3HDM1	87	60.800	ENSCVAG00000007582	r3hdm1	91	60.800	Cyprinodon_variegatus
ENSCCAG00000027199	R3HDM1	64	35.475	ENSDARG00000061081	arpp21	70	40.283	Danio_rerio
ENSCCAG00000027199	R3HDM1	100	91.531	ENSDNOG00000000771	R3HDM1	100	90.803	Dasypus_novemcinctus
ENSCCAG00000027199	R3HDM1	100	83.031	ENSETEG00000013606	R3HDM1	100	83.212	Echinops_telfairi
ENSCCAG00000027199	R3HDM1	60	43.453	ENSEBUG00000014746	arpp21	97	42.640	Eptatretus_burgeri
ENSCCAG00000027199	R3HDM1	100	96.409	ENSEASG00005007392	R3HDM1	100	95.100	Equus_asinus_asinus
ENSCCAG00000027199	R3HDM1	99	96.409	ENSECAG00000019114	R3HDM1	100	95.281	Equus_caballus
ENSCCAG00000027199	R3HDM1	90	88.462	ENSEEUG00000012589	R3HDM1	91	86.506	Erinaceus_europaeus
ENSCCAG00000027199	R3HDM1	92	52.772	ENSELUG00000014413	r3hdm1	87	78.339	Esox_lucius
ENSCCAG00000027199	R3HDM1	83	77.419	ENSELUG00000004909	R3HDM1	99	55.369	Esox_lucius
ENSCCAG00000027199	R3HDM1	100	96.133	ENSFCAG00000027113	R3HDM1	100	94.938	Felis_catus
ENSCCAG00000027199	R3HDM1	56	74.384	ENSFALG00000013731	R3HDM1	72	72.177	Ficedula_albicollis
ENSCCAG00000027199	R3HDM1	100	88.576	ENSFDAG00000016478	R3HDM1	100	94.033	Fukomys_damarensis
ENSCCAG00000027199	R3HDM1	81	68.285	ENSFHEG00000018713	r3hdm1	83	67.949	Fundulus_heteroclitus
ENSCCAG00000027199	R3HDM1	61	64.783	ENSGMOG00000006042	-	74	65.000	Gadus_morhua
ENSCCAG00000027199	R3HDM1	94	77.465	ENSGALG00000012246	R3HDM1	99	85.574	Gallus_gallus
ENSCCAG00000027199	R3HDM1	87	61.053	ENSGAFG00000006203	r3hdm1	95	61.053	Gambusia_affinis
ENSCCAG00000027199	R3HDM1	86	67.949	ENSGACG00000014925	r3hdm1	92	67.949	Gasterosteus_aculeatus
ENSCCAG00000027199	R3HDM1	99	82.254	ENSGAGG00000007840	R3HDM1	93	86.120	Gopherus_agassizii
ENSCCAG00000027199	R3HDM1	100	97.797	ENSGGOG00000008156	R3HDM1	100	97.797	Gorilla_gorilla
ENSCCAG00000027199	R3HDM1	100	89.437	ENSHGLG00000015718	R3HDM1	100	94.033	Heterocephalus_glaber_female
ENSCCAG00000027199	R3HDM1	100	69.266	ENSHGLG00100015374	-	100	69.356	Heterocephalus_glaber_male
ENSCCAG00000027199	R3HDM1	100	89.173	ENSHGLG00100003184	-	100	94.033	Heterocephalus_glaber_male
ENSCCAG00000027199	R3HDM1	87	59.517	ENSHCOG00000013366	r3hdm1	91	60.322	Hippocampus_comes
ENSCCAG00000027199	R3HDM1	89	68.615	ENSIPUG00000013629	r3hdm1	94	70.288	Ictalurus_punctatus
ENSCCAG00000027199	R3HDM1	87	67.828	ENSIPUG00000001676	R3HDM1	91	73.913	Ictalurus_punctatus
ENSCCAG00000027199	R3HDM1	53	38.053	ENSIPUG00000020552	arpp21	74	37.986	Ictalurus_punctatus
ENSCCAG00000027199	R3HDM1	100	95.005	ENSSTOG00000007572	R3HDM1	100	96.091	Ictidomys_tridecemlineatus
ENSCCAG00000027199	R3HDM1	94	85.484	ENSLACG00000005334	R3HDM1	100	71.026	Latimeria_chalumnae
ENSCCAG00000027199	R3HDM1	100	65.347	ENSLOCG00000001641	r3hdm1	100	66.014	Lepisosteus_oculatus
ENSCCAG00000027199	R3HDM1	100	91.197	ENSLAFG00000009065	R3HDM1	100	91.197	Loxodonta_africana
ENSCCAG00000027199	R3HDM1	100	97.818	ENSMFAG00000030331	R3HDM1	100	98.276	Macaca_fascicularis
ENSCCAG00000027199	R3HDM1	100	97.816	ENSMMUG00000009844	R3HDM1	100	97.816	Macaca_mulatta
ENSCCAG00000027199	R3HDM1	100	97.725	ENSMNEG00000027793	R3HDM1	100	98.276	Macaca_nemestrina
ENSCCAG00000027199	R3HDM1	100	97.909	ENSMLEG00000043189	R3HDM1	100	97.909	Mandrillus_leucophaeus
ENSCCAG00000027199	R3HDM1	87	61.662	ENSMAMG00000004532	r3hdm1	91	56.897	Mastacembelus_armatus
ENSCCAG00000027199	R3HDM1	81	68.590	ENSMZEG00005003157	r3hdm1	86	68.590	Maylandia_zebra
ENSCCAG00000027199	R3HDM1	100	77.958	ENSMGAG00000012461	R3HDM1	100	78.049	Meleagris_gallopavo
ENSCCAG00000027199	R3HDM1	100	88.421	ENSMAUG00000010315	R3hdm1	100	93.004	Mesocricetus_auratus
ENSCCAG00000027199	R3HDM1	95	92.641	ENSMICG00000042655	-	100	92.641	Microcebus_murinus
ENSCCAG00000027199	R3HDM1	100	94.566	ENSMICG00000005900	-	100	94.566	Microcebus_murinus
ENSCCAG00000027199	R3HDM1	90	77.376	ENSMODG00000000923	R3HDM1	97	77.471	Monodelphis_domestica
ENSCCAG00000027199	R3HDM1	99	57.568	ENSMALG00000009000	r3hdm1	91	57.568	Monopterus_albus
ENSCCAG00000027199	R3HDM1	100	87.676	MGP_CAROLIEiJ_G0014543	R3hdm1	100	92.798	Mus_caroli
ENSCCAG00000027199	R3HDM1	100	87.764	ENSMUSG00000056211	R3hdm1	100	92.798	Mus_musculus
ENSCCAG00000027199	R3HDM1	100	87.588	MGP_PahariEiJ_G0027779	R3hdm1	100	92.593	Mus_pahari
ENSCCAG00000027199	R3HDM1	100	87.940	MGP_SPRETEiJ_G0015350	R3hdm1	100	93.004	Mus_spretus
ENSCCAG00000027199	R3HDM1	100	94.923	ENSMPUG00000002412	R3HDM1	100	94.923	Mustela_putorius_furo
ENSCCAG00000027199	R3HDM1	100	92.676	ENSMLUG00000013824	R3HDM1	100	92.676	Myotis_lucifugus
ENSCCAG00000027199	R3HDM1	100	98.180	ENSNLEG00000008622	R3HDM1	100	98.180	Nomascus_leucogenys
ENSCCAG00000027199	R3HDM1	89	72.403	ENSMEUG00000011784	R3HDM1	100	72.505	Notamacropus_eugenii
ENSCCAG00000027199	R3HDM1	100	88.380	ENSODEG00000008607	R3HDM1	100	94.033	Octodon_degus
ENSCCAG00000027199	R3HDM1	94	66.873	ENSONIG00000012017	r3hdm1	91	66.873	Oreochromis_niloticus
ENSCCAG00000027199	R3HDM1	100	81.425	ENSOANG00000007987	R3HDM1	100	81.695	Ornithorhynchus_anatinus
ENSCCAG00000027199	R3HDM1	89	93.388	ENSOCUG00000017366	R3HDM1	98	93.591	Oryctolagus_cuniculus
ENSCCAG00000027199	R3HDM1	87	60.106	ENSORLG00000004297	r3hdm1	90	60.106	Oryzias_latipes
ENSCCAG00000027199	R3HDM1	89	60.533	ENSORLG00015017355	r3hdm1	91	60.533	Oryzias_latipes_hsok
ENSCCAG00000027199	R3HDM1	100	93.472	ENSOGAG00000003136	R3HDM1	100	93.472	Otolemur_garnettii
ENSCCAG00000027199	R3HDM1	100	93.563	ENSOARG00000010788	R3HDM1	100	93.654	Ovis_aries
ENSCCAG00000027199	R3HDM1	100	97.992	ENSPPAG00000027858	R3HDM1	100	97.992	Pan_paniscus
ENSCCAG00000027199	R3HDM1	100	94.651	ENSPPRG00000002626	R3HDM1	100	94.747	Panthera_pardus
ENSCCAG00000027199	R3HDM1	100	94.651	ENSPTIG00000016581	R3HDM1	100	94.747	Panthera_tigris_altaica
ENSCCAG00000027199	R3HDM1	100	97.992	ENSPTRG00000012494	R3HDM1	100	97.992	Pan_troglodytes
ENSCCAG00000027199	R3HDM1	100	97.837	ENSPANG00000026448	R3HDM1	100	97.837	Papio_anubis
ENSCCAG00000027199	R3HDM1	94	76.038	ENSPKIG00000004328	r3hdm1	91	76.358	Paramormyrops_kingsleyae
ENSCCAG00000027199	R3HDM1	100	78.210	ENSPSIG00000012915	R3HDM1	100	78.481	Pelodiscus_sinensis
ENSCCAG00000027199	R3HDM1	100	88.908	ENSPEMG00000015187	R3hdm1	100	93.210	Peromyscus_maniculatus_bairdii
ENSCCAG00000027199	R3HDM1	91	53.186	ENSPMAG00000003369	-	98	42.871	Petromyzon_marinus
ENSCCAG00000027199	R3HDM1	100	89.011	ENSPCIG00000002491	R3HDM1	100	83.694	Phascolarctos_cinereus
ENSCCAG00000027199	R3HDM1	87	55.147	ENSPFOG00000015036	r3hdm1	94	55.147	Poecilia_formosa
ENSCCAG00000027199	R3HDM1	87	59.626	ENSPLAG00000018042	r3hdm1	91	59.626	Poecilia_latipinna
ENSCCAG00000027199	R3HDM1	87	59.626	ENSPMEG00000023947	r3hdm1	91	59.626	Poecilia_mexicana
ENSCCAG00000027199	R3HDM1	81	68.608	ENSPREG00000007902	r3hdm1	94	60.313	Poecilia_reticulata
ENSCCAG00000027199	R3HDM1	100	97.054	ENSPPYG00000012815	R3HDM1	100	96.818	Pongo_abelii
ENSCCAG00000027199	R3HDM1	100	81.942	ENSPCAG00000006208	R3HDM1	100	81.397	Procavia_capensis
ENSCCAG00000027199	R3HDM1	100	94.625	ENSPCOG00000012698	R3HDM1	100	94.780	Propithecus_coquereli
ENSCCAG00000027199	R3HDM1	100	85.766	ENSPVAG00000006098	R3HDM1	100	85.766	Pteropus_vampyrus
ENSCCAG00000027199	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	95	70.811	Pygocentrus_nattereri
ENSCCAG00000027199	R3HDM1	67	38.762	ENSPNAG00000004162	arpp21	58	49.873	Pygocentrus_nattereri
ENSCCAG00000027199	R3HDM1	88	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSCCAG00000027199	R3HDM1	100	87.412	ENSRNOG00000004099	R3hdm1	100	87.412	Rattus_norvegicus
ENSCCAG00000027199	R3HDM1	100	97.064	ENSRBIG00000033317	R3HDM1	100	99.262	Rhinopithecus_bieti
ENSCCAG00000027199	R3HDM1	100	97.790	ENSRROG00000034534	R3HDM1	100	97.636	Rhinopithecus_roxellana
ENSCCAG00000027199	R3HDM1	100	98.659	ENSSBOG00000020389	R3HDM1	100	98.659	Saimiri_boliviensis_boliviensis
ENSCCAG00000027199	R3HDM1	100	83.982	ENSSHAG00000016999	R3HDM1	100	84.072	Sarcophilus_harrisii
ENSCCAG00000027199	R3HDM1	89	77.882	ENSSFOG00015014134	r3hdm1	100	70.290	Scleropages_formosus
ENSCCAG00000027199	R3HDM1	100	56.661	ENSSFOG00015019851	-	100	56.306	Scleropages_formosus
ENSCCAG00000027199	R3HDM1	99	61.394	ENSSMAG00000001669	r3hdm1	99	44.919	Scophthalmus_maximus
ENSCCAG00000027199	R3HDM1	87	62.500	ENSSDUG00000010749	r3hdm1	91	62.500	Seriola_dumerili
ENSCCAG00000027199	R3HDM1	92	69.231	ENSSLDG00000004499	r3hdm1	83	69.231	Seriola_lalandi_dorsalis
ENSCCAG00000027199	R3HDM1	74	79.348	ENSSARG00000000352	-	69	81.063	Sorex_araneus
ENSCCAG00000027199	R3HDM1	100	79.946	ENSSPUG00000004167	R3HDM1	100	79.946	Sphenodon_punctatus
ENSCCAG00000027199	R3HDM1	87	62.933	ENSSPAG00000004648	r3hdm1	91	62.933	Stegastes_partitus
ENSCCAG00000027199	R3HDM1	100	95.580	ENSSSCG00000015692	R3HDM1	100	95.033	Sus_scrofa
ENSCCAG00000027199	R3HDM1	100	74.631	ENSTGUG00000011750	R3HDM1	100	72.900	Taeniopygia_guttata
ENSCCAG00000027199	R3HDM1	81	67.532	ENSTRUG00000011654	r3hdm1	84	67.532	Takifugu_rubripes
ENSCCAG00000027199	R3HDM1	82	67.412	ENSTNIG00000010362	r3hdm1	95	45.464	Tetraodon_nigroviridis
ENSCCAG00000027199	R3HDM1	100	87.114	ENSTTRG00000003935	R3HDM1	100	87.387	Tursiops_truncatus
ENSCCAG00000027199	R3HDM1	70	95.490	ENSUAMG00000024806	R3HDM1	99	92.989	Ursus_americanus
ENSCCAG00000027199	R3HDM1	100	93.840	ENSUMAG00000005552	R3HDM1	100	93.943	Ursus_maritimus
ENSCCAG00000027199	R3HDM1	97	94.118	ENSVPAG00000007333	R3HDM1	93	89.979	Vicugna_pacos
ENSCCAG00000027199	R3HDM1	100	96.133	ENSVVUG00000006457	R3HDM1	100	91.894	Vulpes_vulpes
ENSCCAG00000027199	R3HDM1	90	67.170	ENSXETG00000019330	r3hdm1	100	66.969	Xenopus_tropicalis
ENSCCAG00000027199	R3HDM1	71	50.064	ENSXCOG00000017448	r3hdm1	94	50.323	Xiphophorus_couchianus
ENSCCAG00000027199	R3HDM1	81	68.285	ENSXMAG00000007885	r3hdm1	82	68.285	Xiphophorus_maculatus