EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000027409 (Gene tree)
Gene ID: 108290223
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 40165 bases
Position: chrKV389853.1:654401-694565
Accession: 108290223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000019141	EST1	PF10374.9	7.6e-24	1	1
ENSCCAP00000019159	EST1	PF10374.9	8.2e-24	1	1
ENSCCAP00000019126	EST1	PF10374.9	1.1e-23	1	1
ENSCCAP00000019126	EST1_DNA_bind	PF10373.9	3.1e-40	1	2
ENSCCAP00000019126	EST1_DNA_bind	PF10373.9	3.1e-40	2	2
ENSCCAP00000019141	EST1_DNA_bind	PF10373.9	3.2e-40	1	2
ENSCCAP00000019141	EST1_DNA_bind	PF10373.9	3.2e-40	2	2
ENSCCAP00000019159	EST1_DNA_bind	PF10373.9	3.3e-40	1	2
ENSCCAP00000019159	EST1_DNA_bind	PF10373.9	3.3e-40	2	2
ENSCCAP00000019126	PIN_4	PF13638.6	3e-05	1	1
ENSCCAP00000019141	PIN_4	PF13638.6	3.1e-05	1	1
ENSCCAP00000019159	PIN_4	PF13638.6	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000036620	SMG5-202	6371	XM_017509987	ENSCCAP00000019141	1016 (aa)	XP_017365476	A0A2K5QTD1
ENSCCAT00000036637	SMG5-203	3039	-	ENSCCAP00000019159	1012 (aa)	-	A0A2K5QTD9
ENSCCAT00000036605	SMG5-201	6206	XM_017509988	ENSCCAP00000019126	1006 (aa)	XP_017365477	A0A2K5QTB4

Gene Model

Click here to download ENSCCAG00000027409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000027409's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000027409	SMG5	100	98.130	ENSG00000198952	SMG5	100	98.130	Homo_sapiens
ENSCCAG00000027409	SMG5	99	67.317	ENSAPOG00000019690	smg5	93	77.103	Acanthochromis_polyacanthus
ENSCCAG00000027409	SMG5	99	92.641	ENSAMEG00000014458	SMG5	100	92.649	Ailuropoda_melanoleuca
ENSCCAG00000027409	SMG5	99	65.029	ENSACIG00000001353	smg5	99	65.607	Amphilophus_citrinellus
ENSCCAG00000027409	SMG5	99	64.195	ENSAOCG00000019483	smg5	93	78.066	Amphiprion_ocellaris
ENSCCAG00000027409	SMG5	99	65.813	ENSAPEG00000022949	smg5	93	77.830	Amphiprion_percula
ENSCCAG00000027409	SMG5	99	65.896	ENSATEG00000005348	smg5	99	67.313	Anabas_testudineus
ENSCCAG00000027409	SMG5	99	78.809	ENSAPLG00000010263	SMG5	100	78.537	Anas_platyrhynchos
ENSCCAG00000027409	SMG5	100	99.213	ENSANAG00000032899	SMG5	100	99.213	Aotus_nancymaae
ENSCCAG00000027409	SMG5	99	64.892	ENSACLG00000009311	smg5	99	66.025	Astatotilapia_calliptera
ENSCCAG00000027409	SMG5	99	44.391	ENSBTAG00000021747	-	99	43.424	Bos_taurus
ENSCCAG00000027409	SMG5	100	95.669	ENSBTAG00000009435	SMG5	100	95.669	Bos_taurus
ENSCCAG00000027409	SMG5	100	99.213	ENSCJAG00000005684	SMG5	100	99.213	Callithrix_jacchus
ENSCCAG00000027409	SMG5	100	94.291	ENSCAFG00000016839	SMG5	100	93.602	Canis_familiaris
ENSCCAG00000027409	SMG5	100	94.291	ENSCAFG00020006061	SMG5	100	93.602	Canis_lupus_dingo
ENSCCAG00000027409	SMG5	99	44.729	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSCCAG00000027409	SMG5	100	95.571	ENSCHIG00000007709	SMG5	100	95.571	Capra_hircus
ENSCCAG00000027409	SMG5	100	96.559	ENSTSYG00000004099	SMG5	100	96.559	Carlito_syrichta
ENSCCAG00000027409	SMG5	98	74.544	ENSCAPG00000003631	SMG5	100	75.182	Cavia_aperea
ENSCCAG00000027409	SMG5	100	95.776	ENSCPOG00000015696	SMG5	100	95.481	Cavia_porcellus
ENSCCAG00000027409	SMG5	100	98.327	ENSCATG00000030539	SMG5	100	98.327	Cercocebus_atys
ENSCCAG00000027409	SMG5	100	96.169	ENSCLAG00000003983	SMG5	100	96.169	Chinchilla_lanigera
ENSCCAG00000027409	SMG5	100	98.228	ENSCSAG00000002120	SMG5	100	98.228	Chlorocebus_sabaeus
ENSCCAG00000027409	SMG5	55	93.431	ENSCHOG00000008741	-	57	93.431	Choloepus_hoffmanni
ENSCCAG00000027409	SMG5	94	78.702	ENSCPBG00000025848	SMG5	100	78.600	Chrysemys_picta_bellii
ENSCCAG00000027409	SMG5	93	35.077	ENSCING00000008706	-	99	35.077	Ciona_intestinalis
ENSCCAG00000027409	SMG5	100	93.898	ENSCANG00000029208	SMG5	100	93.898	Colobus_angolensis_palliatus
ENSCCAG00000027409	SMG5	100	92.141	ENSCGRG00001006336	Smg5	100	91.847	Cricetulus_griseus_chok1gshd
ENSCCAG00000027409	SMG5	99	92.145	ENSCGRG00000005111	Smg5	100	91.843	Cricetulus_griseus_crigri
ENSCCAG00000027409	SMG5	99	65.175	ENSCSEG00000014220	smg5	92	77.778	Cynoglossus_semilaevis
ENSCCAG00000027409	SMG5	99	60.641	ENSCVAG00000000529	smg5	99	61.337	Cyprinodon_variegatus
ENSCCAG00000027409	SMG5	100	91.732	ENSDNOG00000000051	SMG5	100	91.732	Dasypus_novemcinctus
ENSCCAG00000027409	SMG5	93	36.681	ENSDNOG00000039862	-	100	35.300	Dasypus_novemcinctus
ENSCCAG00000027409	SMG5	100	94.106	ENSDORG00000010382	Smg5	100	93.418	Dipodomys_ordii
ENSCCAG00000027409	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSCCAG00000027409	SMG5	82	96.117	ENSETEG00000010336	SMG5	83	96.117	Echinops_telfairi
ENSCCAG00000027409	SMG5	91	46.596	ENSEBUG00000003739	smg5	98	46.829	Eptatretus_burgeri
ENSCCAG00000027409	SMG5	100	96.654	ENSEASG00005019122	SMG5	100	96.654	Equus_asinus_asinus
ENSCCAG00000027409	SMG5	100	96.654	ENSECAG00000001389	SMG5	100	96.654	Equus_caballus
ENSCCAG00000027409	SMG5	73	98.271	ENSEEUG00000012690	SMG5	73	98.271	Erinaceus_europaeus
ENSCCAG00000027409	SMG5	99	65.444	ENSELUG00000012585	smg5	99	65.072	Esox_lucius
ENSCCAG00000027409	SMG5	100	94.094	ENSFCAG00000011783	SMG5	100	93.314	Felis_catus
ENSCCAG00000027409	SMG5	59	81.940	ENSFALG00000001166	-	99	82.077	Ficedula_albicollis
ENSCCAG00000027409	SMG5	99	92.749	ENSFDAG00000017388	SMG5	100	92.649	Fukomys_damarensis
ENSCCAG00000027409	SMG5	98	62.374	ENSFHEG00000013939	smg5	95	68.293	Fundulus_heteroclitus
ENSCCAG00000027409	SMG5	99	61.302	ENSGMOG00000007310	smg5	92	76.376	Gadus_morhua
ENSCCAG00000027409	SMG5	99	78.014	ENSGALG00000029918	-	100	77.714	Gallus_gallus
ENSCCAG00000027409	SMG5	100	79.487	ENSGAGG00000016131	SMG5	100	79.392	Gopherus_agassizii
ENSCCAG00000027409	SMG5	100	98.425	ENSGGOG00000010932	SMG5	100	98.425	Gorilla_gorilla
ENSCCAG00000027409	SMG5	99	64.602	ENSHBUG00000008654	smg5	99	64.873	Haplochromis_burtoni
ENSCCAG00000027409	SMG5	100	92.829	ENSHGLG00000019152	SMG5	100	93.026	Heterocephalus_glaber_female
ENSCCAG00000027409	SMG5	90	93.209	ENSHGLG00100015948	SMG5	99	93.428	Heterocephalus_glaber_male
ENSCCAG00000027409	SMG5	86	74.372	ENSHCOG00000010229	smg5	83	77.273	Hippocampus_comes
ENSCCAG00000027409	SMG5	99	60.398	ENSIPUG00000006624	Smg5	99	62.078	Ictalurus_punctatus
ENSCCAG00000027409	SMG5	100	96.755	ENSSTOG00000001780	SMG5	100	96.755	Ictidomys_tridecemlineatus
ENSCCAG00000027409	SMG5	100	93.032	ENSJJAG00000022763	Smg5	100	92.836	Jaculus_jaculus
ENSCCAG00000027409	SMG5	51	58.834	ENSKMAG00000014586	smg5	99	60.904	Kryptolebias_marmoratus
ENSCCAG00000027409	SMG5	99	66.313	ENSLBEG00000002145	smg5	99	66.248	Labrus_bergylta
ENSCCAG00000027409	SMG5	100	65.110	ENSLACG00000010521	SMG5	100	64.919	Latimeria_chalumnae
ENSCCAG00000027409	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSCCAG00000027409	SMG5	100	94.488	ENSLAFG00000006241	SMG5	100	94.488	Loxodonta_africana
ENSCCAG00000027409	SMG5	100	98.228	ENSMFAG00000045357	SMG5	100	98.228	Macaca_fascicularis
ENSCCAG00000027409	SMG5	100	98.130	ENSMMUG00000000090	SMG5	100	98.130	Macaca_mulatta
ENSCCAG00000027409	SMG5	100	98.130	ENSMNEG00000044425	SMG5	100	98.130	Macaca_nemestrina
ENSCCAG00000027409	SMG5	100	91.961	ENSMLEG00000041192	SMG5	100	91.961	Mandrillus_leucophaeus
ENSCCAG00000027409	SMG5	99	60.928	ENSMAMG00000010683	smg5	58	56.423	Mastacembelus_armatus
ENSCCAG00000027409	SMG5	99	63.454	ENSMZEG00005015815	smg5	99	64.272	Maylandia_zebra
ENSCCAG00000027409	SMG5	63	58.673	ENSMZEG00005016543	smg5	100	58.824	Maylandia_zebra
ENSCCAG00000027409	SMG5	100	91.257	ENSMAUG00000010381	Smg5	100	91.061	Mesocricetus_auratus
ENSCCAG00000027409	SMG5	55	45.280	ENSMAUG00000000043	-	96	44.522	Mesocricetus_auratus
ENSCCAG00000027409	SMG5	100	97.146	ENSMICG00000002257	SMG5	100	97.146	Microcebus_murinus
ENSCCAG00000027409	SMG5	100	91.176	ENSMOCG00000016590	Smg5	100	90.588	Microtus_ochrogaster
ENSCCAG00000027409	SMG5	99	59.127	ENSMMOG00000017199	smg5	99	59.409	Mola_mola
ENSCCAG00000027409	SMG5	80	38.173	ENSMODG00000004735	-	86	39.467	Monodelphis_domestica
ENSCCAG00000027409	SMG5	98	34.672	ENSMODG00000004511	-	99	34.053	Monodelphis_domestica
ENSCCAG00000027409	SMG5	93	37.073	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSCCAG00000027409	SMG5	79	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSCCAG00000027409	SMG5	87	90.090	ENSMODG00000016901	SMG5	98	90.541	Monodelphis_domestica
ENSCCAG00000027409	SMG5	99	59.484	ENSMALG00000010375	smg5	99	59.342	Monopterus_albus
ENSCCAG00000027409	SMG5	100	91.945	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCCAG00000027409	SMG5	100	92.043	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCCAG00000027409	SMG5	100	91.658	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCCAG00000027409	SMG5	100	91.847	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCCAG00000027409	SMG5	94	92.842	ENSMPUG00000004546	SMG5	100	92.105	Mustela_putorius_furo
ENSCCAG00000027409	SMG5	100	95.597	ENSMLUG00000008518	SMG5	100	95.597	Myotis_lucifugus
ENSCCAG00000027409	SMG5	100	93.314	ENSNGAG00000020706	Smg5	100	93.019	Nannospalax_galili
ENSCCAG00000027409	SMG5	98	44.389	ENSNGAG00000012101	-	98	44.588	Nannospalax_galili
ENSCCAG00000027409	SMG5	97	63.243	ENSNBRG00000004332	smg5	98	64.085	Neolamprologus_brichardi
ENSCCAG00000027409	SMG5	100	97.933	ENSNLEG00000012439	SMG5	100	97.933	Nomascus_leucogenys
ENSCCAG00000027409	SMG5	100	88.004	ENSMEUG00000012834	SMG5	100	87.119	Notamacropus_eugenii
ENSCCAG00000027409	SMG5	100	93.996	ENSOPRG00000009152	SMG5	100	93.996	Ochotona_princeps
ENSCCAG00000027409	SMG5	100	95.276	ENSODEG00000012237	SMG5	100	95.276	Octodon_degus
ENSCCAG00000027409	SMG5	99	59.965	ENSONIG00000008632	smg5	92	78.353	Oreochromis_niloticus
ENSCCAG00000027409	SMG5	89	40.576	ENSOCUG00000023338	-	99	39.978	Oryctolagus_cuniculus
ENSCCAG00000027409	SMG5	99	95.459	ENSOCUG00000012886	SMG5	100	95.464	Oryctolagus_cuniculus
ENSCCAG00000027409	SMG5	51	57.713	ENSORLG00000016239	smg5	99	61.614	Oryzias_latipes
ENSCCAG00000027409	SMG5	99	64.809	ENSORLG00020013127	smg5	99	65.433	Oryzias_latipes_hni
ENSCCAG00000027409	SMG5	99	64.912	ENSORLG00015019014	smg5	99	65.695	Oryzias_latipes_hsok
ENSCCAG00000027409	SMG5	82	59.227	ENSOMEG00000021330	smg5	92	60.493	Oryzias_melastigma
ENSCCAG00000027409	SMG5	100	94.980	ENSOGAG00000004966	SMG5	100	94.980	Otolemur_garnettii
ENSCCAG00000027409	SMG5	100	95.669	ENSOARG00000005778	SMG5	100	95.669	Ovis_aries
ENSCCAG00000027409	SMG5	99	44.673	ENSOARG00000011963	-	99	43.567	Ovis_aries
ENSCCAG00000027409	SMG5	100	97.933	ENSPPAG00000011996	SMG5	100	97.933	Pan_paniscus
ENSCCAG00000027409	SMG5	99	93.946	ENSPPRG00000011901	SMG5	100	93.145	Panthera_pardus
ENSCCAG00000027409	SMG5	99	85.771	ENSPTIG00000007892	SMG5	98	86.094	Panthera_tigris_altaica
ENSCCAG00000027409	SMG5	100	98.130	ENSPTRG00000023925	SMG5	100	98.130	Pan_troglodytes
ENSCCAG00000027409	SMG5	100	98.130	ENSPTRG00000049282	-	100	98.130	Pan_troglodytes
ENSCCAG00000027409	SMG5	100	98.327	ENSPANG00000011201	SMG5	100	98.327	Papio_anubis
ENSCCAG00000027409	SMG5	99	65.637	ENSPKIG00000009402	smg5	99	65.856	Paramormyrops_kingsleyae
ENSCCAG00000027409	SMG5	99	80.655	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSCCAG00000027409	SMG5	99	60.331	ENSPMGG00000010465	smg5	99	60.628	Periophthalmus_magnuspinnatus
ENSCCAG00000027409	SMG5	100	92.338	ENSPEMG00000001819	Smg5	100	92.043	Peromyscus_maniculatus_bairdii
ENSCCAG00000027409	SMG5	56	45.951	ENSPEMG00000010022	-	95	45.078	Peromyscus_maniculatus_bairdii
ENSCCAG00000027409	SMG5	99	49.710	ENSPMAG00000000410	smg5	100	49.905	Petromyzon_marinus
ENSCCAG00000027409	SMG5	100	89.489	ENSPCIG00000018938	SMG5	100	89.882	Phascolarctos_cinereus
ENSCCAG00000027409	SMG5	51	60.409	ENSPFOG00000010191	smg5	99	62.007	Poecilia_formosa
ENSCCAG00000027409	SMG5	51	59.369	ENSPLAG00000009332	smg5	99	61.828	Poecilia_latipinna
ENSCCAG00000027409	SMG5	99	65.802	ENSPMEG00000014105	smg5	99	65.488	Poecilia_mexicana
ENSCCAG00000027409	SMG5	93	69.425	ENSPREG00000017713	smg5	99	62.007	Poecilia_reticulata
ENSCCAG00000027409	SMG5	100	98.425	ENSPPYG00000000723	SMG5	100	98.425	Pongo_abelii
ENSCCAG00000027409	SMG5	75	97.238	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSCCAG00000027409	SMG5	100	97.244	ENSPCOG00000004741	SMG5	100	97.244	Propithecus_coquereli
ENSCCAG00000027409	SMG5	100	86.024	ENSPVAG00000016748	SMG5	100	86.024	Pteropus_vampyrus
ENSCCAG00000027409	SMG5	99	59.350	ENSPNYG00000013397	smg5	99	60.850	Pundamilia_nyererei
ENSCCAG00000027409	SMG5	100	92.141	ENSRNOG00000019590	Smg5	100	91.847	Rattus_norvegicus
ENSCCAG00000027409	SMG5	100	98.031	ENSRBIG00000027428	SMG5	100	98.031	Rhinopithecus_bieti
ENSCCAG00000027409	SMG5	100	97.933	ENSRROG00000030035	SMG5	100	97.933	Rhinopithecus_roxellana
ENSCCAG00000027409	SMG5	100	99.409	ENSSBOG00000033339	SMG5	100	99.409	Saimiri_boliviensis_boliviensis
ENSCCAG00000027409	SMG5	65	39.766	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSCCAG00000027409	SMG5	88	40.420	ENSSHAG00000000561	-	87	40.849	Sarcophilus_harrisii
ENSCCAG00000027409	SMG5	99	88.978	ENSSHAG00000014163	SMG5	100	89.389	Sarcophilus_harrisii
ENSCCAG00000027409	SMG5	99	33.979	ENSSHAG00000009572	-	99	32.752	Sarcophilus_harrisii
ENSCCAG00000027409	SMG5	99	65.444	ENSSFOG00015024175	smg5	99	66.146	Scleropages_formosus
ENSCCAG00000027409	SMG5	99	60.904	ENSSMAG00000013059	smg5	99	62.333	Scophthalmus_maximus
ENSCCAG00000027409	SMG5	51	60.145	ENSSDUG00000007122	smg5	92	76.869	Seriola_dumerili
ENSCCAG00000027409	SMG5	97	60.273	ENSSLDG00000011418	smg5	92	77.594	Seriola_lalandi_dorsalis
ENSCCAG00000027409	SMG5	90	81.243	ENSSARG00000012484	SMG5	100	81.243	Sorex_araneus
ENSCCAG00000027409	SMG5	94	77.273	ENSSPUG00000002260	SMG5	100	76.364	Sphenodon_punctatus
ENSCCAG00000027409	SMG5	92	75.694	ENSSPAG00000014266	smg5	99	64.717	Stegastes_partitus
ENSCCAG00000027409	SMG5	100	97.146	ENSSSCG00000006490	-	100	97.146	Sus_scrofa
ENSCCAG00000027409	SMG5	99	75.271	ENSSSCG00000039308	-	100	75.468	Sus_scrofa
ENSCCAG00000027409	SMG5	99	80.849	ENSTGUG00000003748	-	100	80.604	Taeniopygia_guttata
ENSCCAG00000027409	SMG5	99	64.768	ENSTRUG00000012580	smg5	99	64.286	Takifugu_rubripes
ENSCCAG00000027409	SMG5	99	65.179	ENSTNIG00000010303	smg5	99	65.049	Tetraodon_nigroviridis
ENSCCAG00000027409	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSCCAG00000027409	SMG5	100	91.634	ENSTTRG00000001401	SMG5	100	91.634	Tursiops_truncatus
ENSCCAG00000027409	SMG5	100	93.504	ENSUAMG00000013721	SMG5	100	92.815	Ursus_americanus
ENSCCAG00000027409	SMG5	100	88.008	ENSUMAG00000018041	SMG5	99	87.488	Ursus_maritimus
ENSCCAG00000027409	SMG5	99	86.680	ENSVPAG00000009446	SMG5	99	86.680	Vicugna_pacos
ENSCCAG00000027409	SMG5	100	94.291	ENSVVUG00000005887	SMG5	100	93.602	Vulpes_vulpes
ENSCCAG00000027409	SMG5	77	66.330	ENSXETG00000033791	SMG5	99	65.574	Xenopus_tropicalis
ENSCCAG00000027409	SMG5	99	65.764	ENSXMAG00000013499	smg5	99	65.477	Xiphophorus_maculatus