EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000028842 (Gene tree)
Gene ID: 108314781
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 47437 bases
Position: chrKV389587.1:2192333-2239769
Accession: 108314781
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000022056	TruB_N	PF01509.18	3.3e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000039551	TRUB1-201	3591	XM_017543811	ENSCCAP00000022056	351 (aa)	XP_017399300	A0A2K5R1Q0

Gene Model

Click here to download ENSCCAG00000028842's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000028842's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000028842	TRUB1	72	30.928	ENSCCAG00000026531	-	88	30.928
ENSCCAG00000028842	TRUB1	71	30.345	ENSCCAG00000028463	-	86	30.345

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000028842	TRUB1	100	95.442	ENSG00000165832	TRUB1	96	96.439	Homo_sapiens
ENSCCAG00000028842	TRUB1	70	68.571	ENSAPOG00000020565	trub1	89	68.293	Acanthochromis_polyacanthus
ENSCCAG00000028842	TRUB1	96	93.195	ENSAMEG00000014931	TRUB1	96	93.195	Ailuropoda_melanoleuca
ENSCCAG00000028842	TRUB1	81	57.746	ENSACIG00000003060	trub1	94	57.746	Amphilophus_citrinellus
ENSCCAG00000028842	TRUB1	70	68.571	ENSAOCG00000017188	trub1	89	68.293	Amphiprion_ocellaris
ENSCCAG00000028842	TRUB1	70	67.886	ENSAPEG00000015209	trub1	89	67.886	Amphiprion_percula
ENSCCAG00000028842	TRUB1	69	68.880	ENSATEG00000023291	trub1	86	68.880	Anabas_testudineus
ENSCCAG00000028842	TRUB1	78	75.636	ENSAPLG00000006808	TRUB1	99	75.636	Anas_platyrhynchos
ENSCCAG00000028842	TRUB1	77	71.004	ENSACAG00000009282	TRUB1	97	71.004	Anolis_carolinensis
ENSCCAG00000028842	TRUB1	100	98.006	ENSANAG00000022870	TRUB1	100	98.006	Aotus_nancymaae
ENSCCAG00000028842	TRUB1	72	67.063	ENSACLG00000000823	trub1	91	67.063	Astatotilapia_calliptera
ENSCCAG00000028842	TRUB1	77	64.945	ENSAMXG00000015845	trub1	90	64.945	Astyanax_mexicanus
ENSCCAG00000028842	TRUB1	97	92.398	ENSBTAG00000012955	TRUB1	95	92.857	Bos_taurus
ENSCCAG00000028842	TRUB1	100	98.860	ENSCJAG00000047815	TRUB1	100	98.860	Callithrix_jacchus
ENSCCAG00000028842	TRUB1	99	92.857	ENSCAFG00000011688	TRUB1	96	94.048	Canis_familiaris
ENSCCAG00000028842	TRUB1	99	93.143	ENSCAFG00020013237	TRUB1	96	94.345	Canis_lupus_dingo
ENSCCAG00000028842	TRUB1	97	92.690	ENSCHIG00000020884	TRUB1	99	91.714	Capra_hircus
ENSCCAG00000028842	TRUB1	100	89.205	ENSTSYG00000000446	TRUB1	86	96.026	Carlito_syrichta
ENSCCAG00000028842	TRUB1	72	84.646	ENSCAPG00000017088	TRUB1	100	84.646	Cavia_aperea
ENSCCAG00000028842	TRUB1	70	84.959	ENSCPOG00000040236	-	95	87.069	Cavia_porcellus
ENSCCAG00000028842	TRUB1	71	79.116	ENSCPOG00000030129	-	76	93.333	Cavia_porcellus
ENSCCAG00000028842	TRUB1	100	96.296	ENSCATG00000033431	TRUB1	96	97.329	Cercocebus_atys
ENSCCAG00000028842	TRUB1	70	88.211	ENSCLAG00000008664	TRUB1	95	90.948	Chinchilla_lanigera
ENSCCAG00000028842	TRUB1	100	96.581	ENSCSAG00000004891	TRUB1	100	96.581	Chlorocebus_sabaeus
ENSCCAG00000028842	TRUB1	99	78.963	ENSCHOG00000011931	TRUB1	95	79.880	Choloepus_hoffmanni
ENSCCAG00000028842	TRUB1	77	79.412	ENSCPBG00000003051	TRUB1	94	79.412	Chrysemys_picta_bellii
ENSCCAG00000028842	TRUB1	100	96.581	ENSCANG00000029445	TRUB1	100	96.581	Colobus_angolensis_palliatus
ENSCCAG00000028842	TRUB1	82	79.443	ENSCGRG00001016772	-	90	79.461	Cricetulus_griseus_chok1gshd
ENSCCAG00000028842	TRUB1	80	79.643	ENSCGRG00001010322	-	79	79.592	Cricetulus_griseus_chok1gshd
ENSCCAG00000028842	TRUB1	80	88.929	ENSCGRG00000010806	Trub1	91	88.215	Cricetulus_griseus_crigri
ENSCCAG00000028842	TRUB1	73	62.500	ENSCSEG00000011261	trub1	97	56.811	Cynoglossus_semilaevis
ENSCCAG00000028842	TRUB1	74	65.891	ENSCVAG00000008791	trub1	79	65.891	Cyprinodon_variegatus
ENSCCAG00000028842	TRUB1	80	63.929	ENSDARG00000053805	trub1	93	63.929	Danio_rerio
ENSCCAG00000028842	TRUB1	97	87.647	ENSDNOG00000001069	TRUB1	99	86.286	Dasypus_novemcinctus
ENSCCAG00000028842	TRUB1	99	88.571	ENSDORG00000010431	Trub1	87	94.684	Dipodomys_ordii
ENSCCAG00000028842	TRUB1	81	76.471	ENSETEG00000009183	TRUB1	81	77.451	Echinops_telfairi
ENSCCAG00000028842	TRUB1	96	93.750	ENSEASG00005014739	TRUB1	96	93.750	Equus_asinus_asinus
ENSCCAG00000028842	TRUB1	96	93.750	ENSECAG00000007177	TRUB1	96	93.750	Equus_caballus
ENSCCAG00000028842	TRUB1	99	75.698	ENSEEUG00000013993	TRUB1	83	82.274	Erinaceus_europaeus
ENSCCAG00000028842	TRUB1	70	69.796	ENSELUG00000000502	trub1	86	69.796	Esox_lucius
ENSCCAG00000028842	TRUB1	95	93.433	ENSFCAG00000031927	TRUB1	96	93.433	Felis_catus
ENSCCAG00000028842	TRUB1	68	76.250	ENSFALG00000002232	TRUB1	92	76.250	Ficedula_albicollis
ENSCCAG00000028842	TRUB1	68	89.873	ENSFDAG00000008140	TRUB1	95	90.948	Fukomys_damarensis
ENSCCAG00000028842	TRUB1	70	66.531	ENSFHEG00000004016	trub1	84	66.531	Fundulus_heteroclitus
ENSCCAG00000028842	TRUB1	77	75.000	ENSGALG00000009091	TRUB1	97	74.057	Gallus_gallus
ENSCCAG00000028842	TRUB1	68	65.272	ENSGAFG00000009193	trub1	86	64.344	Gambusia_affinis
ENSCCAG00000028842	TRUB1	56	68.205	ENSGACG00000015387	trub1	96	68.205	Gasterosteus_aculeatus
ENSCCAG00000028842	TRUB1	83	77.320	ENSGAGG00000009758	TRUB1	81	78.169	Gopherus_agassizii
ENSCCAG00000028842	TRUB1	100	95.726	ENSGGOG00000004583	TRUB1	96	97.033	Gorilla_gorilla
ENSCCAG00000028842	TRUB1	72	67.063	ENSHBUG00000016787	trub1	91	67.063	Haplochromis_burtoni
ENSCCAG00000028842	TRUB1	99	86.571	ENSHGLG00000015314	TRUB1	96	88.393	Heterocephalus_glaber_female
ENSCCAG00000028842	TRUB1	70	85.772	ENSHGLG00100009183	TRUB1	95	88.362	Heterocephalus_glaber_male
ENSCCAG00000028842	TRUB1	70	68.163	ENSHCOG00000017877	trub1	89	68.163	Hippocampus_comes
ENSCCAG00000028842	TRUB1	76	66.667	ENSIPUG00000017559	trub1	94	66.667	Ictalurus_punctatus
ENSCCAG00000028842	TRUB1	89	93.312	ENSSTOG00000003641	TRUB1	90	94.352	Ictidomys_tridecemlineatus
ENSCCAG00000028842	TRUB1	85	91.973	ENSJJAG00000011800	Trub1	88	91.973	Jaculus_jaculus
ENSCCAG00000028842	TRUB1	72	65.759	ENSKMAG00000006232	trub1	92	65.759	Kryptolebias_marmoratus
ENSCCAG00000028842	TRUB1	70	67.886	ENSLBEG00000026722	trub1	92	63.910	Labrus_bergylta
ENSCCAG00000028842	TRUB1	79	73.188	ENSLACG00000014885	TRUB1	92	73.188	Latimeria_chalumnae
ENSCCAG00000028842	TRUB1	78	69.963	ENSLOCG00000012979	trub1	93	69.963	Lepisosteus_oculatus
ENSCCAG00000028842	TRUB1	100	79.330	ENSLAFG00000015452	TRUB1	100	80.168	Loxodonta_africana
ENSCCAG00000028842	TRUB1	100	96.296	ENSMFAG00000031767	TRUB1	96	97.329	Macaca_fascicularis
ENSCCAG00000028842	TRUB1	100	96.581	ENSMMUG00000001902	TRUB1	100	96.581	Macaca_mulatta
ENSCCAG00000028842	TRUB1	100	92.308	ENSMNEG00000044646	TRUB1	96	93.175	Macaca_nemestrina
ENSCCAG00000028842	TRUB1	100	96.296	ENSMLEG00000042655	TRUB1	96	97.329	Mandrillus_leucophaeus
ENSCCAG00000028842	TRUB1	72	67.063	ENSMZEG00005024095	trub1	91	67.063	Maylandia_zebra
ENSCCAG00000028842	TRUB1	78	73.723	ENSMGAG00000011135	TRUB1	94	73.723	Meleagris_gallopavo
ENSCCAG00000028842	TRUB1	85	85.570	ENSMAUG00000011101	Trub1	89	85.667	Mesocricetus_auratus
ENSCCAG00000028842	TRUB1	99	93.143	ENSMICG00000016324	TRUB1	96	94.643	Microcebus_murinus
ENSCCAG00000028842	TRUB1	92	82.622	ENSMOCG00000017759	Trub1	91	87.043	Microtus_ochrogaster
ENSCCAG00000028842	TRUB1	81	83.217	ENSMODG00000009676	TRUB1	81	81.419	Monodelphis_domestica
ENSCCAG00000028842	TRUB1	99	80.571	MGP_CAROLIEiJ_G0023100	Trub1	89	86.711	Mus_caroli
ENSCCAG00000028842	TRUB1	99	79.429	ENSMUSG00000025086	Trub1	89	85.714	Mus_musculus
ENSCCAG00000028842	TRUB1	99	80.857	MGP_PahariEiJ_G0014588	Trub1	89	86.711	Mus_pahari
ENSCCAG00000028842	TRUB1	99	79.714	MGP_SPRETEiJ_G0024021	Trub1	89	86.047	Mus_spretus
ENSCCAG00000028842	TRUB1	96	95.238	ENSMPUG00000003556	TRUB1	96	95.238	Mustela_putorius_furo
ENSCCAG00000028842	TRUB1	95	88.955	ENSMLUG00000017686	TRUB1	100	85.185	Myotis_lucifugus
ENSCCAG00000028842	TRUB1	99	86.000	ENSNGAG00000018682	Trub1	97	88.095	Nannospalax_galili
ENSCCAG00000028842	TRUB1	70	68.293	ENSNBRG00000023393	trub1	88	68.293	Neolamprologus_brichardi
ENSCCAG00000028842	TRUB1	100	96.011	ENSNLEG00000016345	TRUB1	100	96.011	Nomascus_leucogenys
ENSCCAG00000028842	TRUB1	57	91.045	ENSMEUG00000006603	TRUB1	78	88.152	Notamacropus_eugenii
ENSCCAG00000028842	TRUB1	86	85.714	ENSOPRG00000009371	TRUB1	88	85.714	Ochotona_princeps
ENSCCAG00000028842	TRUB1	99	84.286	ENSODEG00000010854	TRUB1	96	85.714	Octodon_degus
ENSCCAG00000028842	TRUB1	70	67.886	ENSONIG00000007249	trub1	89	67.886	Oreochromis_niloticus
ENSCCAG00000028842	TRUB1	78	80.292	ENSOANG00000001556	TRUB1	93	78.092	Ornithorhynchus_anatinus
ENSCCAG00000028842	TRUB1	86	89.037	ENSOCUG00000009456	TRUB1	96	87.009	Oryctolagus_cuniculus
ENSCCAG00000028842	TRUB1	69	69.295	ENSORLG00000029719	trub1	86	69.295	Oryzias_latipes
ENSCCAG00000028842	TRUB1	69	68.880	ENSORLG00020016767	trub1	85	68.880	Oryzias_latipes_hni
ENSCCAG00000028842	TRUB1	69	68.880	ENSORLG00015014728	trub1	86	68.880	Oryzias_latipes_hsok
ENSCCAG00000028842	TRUB1	74	66.409	ENSOMEG00000014556	trub1	90	66.537	Oryzias_melastigma
ENSCCAG00000028842	TRUB1	98	94.752	ENSOGAG00000015895	TRUB1	96	95.536	Otolemur_garnettii
ENSCCAG00000028842	TRUB1	84	93.709	ENSOARG00000015591	TRUB1	87	93.464	Ovis_aries
ENSCCAG00000028842	TRUB1	100	96.011	ENSPPAG00000043645	TRUB1	100	96.011	Pan_paniscus
ENSCCAG00000028842	TRUB1	95	92.836	ENSPPRG00000007096	TRUB1	96	92.836	Panthera_pardus
ENSCCAG00000028842	TRUB1	95	93.134	ENSPTIG00000006378	TRUB1	96	93.134	Panthera_tigris_altaica
ENSCCAG00000028842	TRUB1	100	96.011	ENSPTRG00000002964	TRUB1	100	96.011	Pan_troglodytes
ENSCCAG00000028842	TRUB1	100	96.296	ENSPANG00000020712	TRUB1	96	97.329	Papio_anubis
ENSCCAG00000028842	TRUB1	77	77.206	ENSPSIG00000012877	TRUB1	93	77.206	Pelodiscus_sinensis
ENSCCAG00000028842	TRUB1	72	64.567	ENSPMGG00000000075	trub1	91	64.567	Periophthalmus_magnuspinnatus
ENSCCAG00000028842	TRUB1	85	85.333	ENSPEMG00000011156	Trub1	88	85.333	Peromyscus_maniculatus_bairdii
ENSCCAG00000028842	TRUB1	81	82.517	ENSPCIG00000009729	TRUB1	79	81.507	Phascolarctos_cinereus
ENSCCAG00000028842	TRUB1	70	66.122	ENSPFOG00000009950	trub1	90	66.122	Poecilia_formosa
ENSCCAG00000028842	TRUB1	70	66.122	ENSPLAG00000013855	trub1	86	66.122	Poecilia_latipinna
ENSCCAG00000028842	TRUB1	70	66.122	ENSPMEG00000009064	trub1	88	66.122	Poecilia_mexicana
ENSCCAG00000028842	TRUB1	70	66.939	ENSPREG00000003343	trub1	92	65.116	Poecilia_reticulata
ENSCCAG00000028842	TRUB1	96	96.439	ENSPPYG00000002676	TRUB1	96	96.439	Pongo_abelii
ENSCCAG00000028842	TRUB1	100	76.204	ENSPCAG00000008427	TRUB1	100	75.921	Procavia_capensis
ENSCCAG00000028842	TRUB1	99	88.286	ENSPCOG00000024360	TRUB1	96	89.851	Propithecus_coquereli
ENSCCAG00000028842	TRUB1	75	92.075	ENSPVAG00000007575	TRUB1	95	94.024	Pteropus_vampyrus
ENSCCAG00000028842	TRUB1	72	67.063	ENSPNYG00000018614	trub1	91	67.063	Pundamilia_nyererei
ENSCCAG00000028842	TRUB1	74	59.231	ENSPNAG00000006881	trub1	84	59.231	Pygocentrus_nattereri
ENSCCAG00000028842	TRUB1	99	81.143	ENSRNOG00000017321	Trub1	88	86.711	Rattus_norvegicus
ENSCCAG00000028842	TRUB1	100	86.325	ENSRBIG00000033423	TRUB1	96	87.240	Rhinopithecus_bieti
ENSCCAG00000028842	TRUB1	100	96.011	ENSRROG00000033902	TRUB1	96	97.329	Rhinopithecus_roxellana
ENSCCAG00000028842	TRUB1	100	98.860	ENSSBOG00000024237	TRUB1	100	98.860	Saimiri_boliviensis_boliviensis
ENSCCAG00000028842	TRUB1	72	81.250	ENSSHAG00000009346	TRUB1	86	81.250	Sarcophilus_harrisii
ENSCCAG00000028842	TRUB1	69	69.959	ENSSFOG00015022124	trub1	83	69.959	Scleropages_formosus
ENSCCAG00000028842	TRUB1	70	68.699	ENSSMAG00000001020	trub1	88	68.699	Scophthalmus_maximus
ENSCCAG00000028842	TRUB1	68	69.167	ENSSDUG00000016414	trub1	88	69.106	Seriola_dumerili
ENSCCAG00000028842	TRUB1	68	69.583	ENSSLDG00000015486	trub1	88	69.512	Seriola_lalandi_dorsalis
ENSCCAG00000028842	TRUB1	80	77.143	ENSSPUG00000001642	TRUB1	96	77.143	Sphenodon_punctatus
ENSCCAG00000028842	TRUB1	74	66.923	ENSSPAG00000001217	trub1	92	66.923	Stegastes_partitus
ENSCCAG00000028842	TRUB1	99	87.714	ENSSSCG00000010653	TRUB1	96	88.690	Sus_scrofa
ENSCCAG00000028842	TRUB1	77	75.926	ENSTGUG00000010971	TRUB1	97	75.735	Taeniopygia_guttata
ENSCCAG00000028842	TRUB1	72	77.075	ENSTBEG00000002880	TRUB1	99	77.075	Tupaia_belangeri
ENSCCAG00000028842	TRUB1	72	91.633	ENSTTRG00000005767	TRUB1	95	92.430	Tursiops_truncatus
ENSCCAG00000028842	TRUB1	96	94.643	ENSUAMG00000024876	TRUB1	96	94.643	Ursus_americanus
ENSCCAG00000028842	TRUB1	84	96.949	ENSUMAG00000002411	TRUB1	88	96.959	Ursus_maritimus
ENSCCAG00000028842	TRUB1	99	91.714	ENSVPAG00000005507	TRUB1	96	92.857	Vicugna_pacos
ENSCCAG00000028842	TRUB1	99	91.429	ENSVVUG00000010085	TRUB1	73	96.346	Vulpes_vulpes
ENSCCAG00000028842	TRUB1	77	66.176	ENSXETG00000023828	trub1	98	66.176	Xenopus_tropicalis
ENSCCAG00000028842	TRUB1	69	65.021	ENSXCOG00000017847	trub1	86	65.021	Xiphophorus_couchianus
ENSCCAG00000028842	TRUB1	70	65.306	ENSXMAG00000014701	trub1	88	65.306	Xiphophorus_maculatus