EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000030817 (Gene tree)
Gene ID: 108288528
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 79300 bases
Position: chrKV389802.1:2242731-2322030
Accession: 108288528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000026735	ResIII	PF04851.15	7.4e-12	1	1
ENSCCAP00000026742	ResIII	PF04851.15	7.5e-12	1	1
ENSCCAP00000026742	DEAD	PF00270.29	1.3e-06	1	1
ENSCCAP00000026735	DEAD	PF00270.29	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000044266	SMARCA1-201	3150	XM_017507489	ENSCCAP00000026735	1049 (aa)	XP_017362978	A0A2K5RF25
ENSCCAT00000044273	SMARCA1-202	3114	-	ENSCCAP00000026742	1037 (aa)	-	A0A2K5RF31

Gene Model

Click here to download ENSCCAG00000030817's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000030817's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000030817	SMARCA1	53	39.201	ENSCCAG00000036079	CHD1L	86	43.750
ENSCCAG00000030817	SMARCA1	93	82.204	ENSCCAG00000027215	SMARCA5	99	82.204

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000030817	SMARCA1	100	96.786	ENSG00000102038	SMARCA1	100	96.786	Homo_sapiens
ENSCCAG00000030817	SMARCA1	92	81.045	ENSAPOG00000016035	smarca5	98	81.291	Acanthochromis_polyacanthus
ENSCCAG00000030817	SMARCA1	100	93.738	ENSAMEG00000015218	SMARCA1	100	93.645	Ailuropoda_melanoleuca
ENSCCAG00000030817	SMARCA1	85	81.174	ENSACIG00000016982	smarca5	99	81.250	Amphilophus_citrinellus
ENSCCAG00000030817	SMARCA1	92	81.045	ENSAOCG00000015578	smarca5	95	80.141	Amphiprion_ocellaris
ENSCCAG00000030817	SMARCA1	92	81.045	ENSAPEG00000011117	smarca5	99	81.132	Amphiprion_percula
ENSCCAG00000030817	SMARCA1	93	80.652	ENSATEG00000012894	smarca5	94	81.017	Anabas_testudineus
ENSCCAG00000030817	SMARCA1	93	90.224	ENSAPLG00000013149	SMARCA1	100	90.224	Anas_platyrhynchos
ENSCCAG00000030817	SMARCA1	97	86.699	ENSACAG00000011376	SMARCA1	95	88.488	Anolis_carolinensis
ENSCCAG00000030817	SMARCA1	100	93.655	ENSANAG00000023098	SMARCA1	100	93.655	Aotus_nancymaae
ENSCCAG00000030817	SMARCA1	96	78.508	ENSACLG00000025356	smarca5	95	80.444	Astatotilapia_calliptera
ENSCCAG00000030817	SMARCA1	87	85.591	ENSAMXG00000011227	smarca1	99	86.909	Astyanax_mexicanus
ENSCCAG00000030817	SMARCA1	98	78.046	ENSAMXG00000005709	smarca5	94	81.128	Astyanax_mexicanus
ENSCCAG00000030817	SMARCA1	99	93.579	ENSBTAG00000002292	SMARCA1	98	93.981	Bos_taurus
ENSCCAG00000030817	SMARCA1	93	60.949	WBGene00002169	isw-1	97	60.949	Caenorhabditis_elegans
ENSCCAG00000030817	SMARCA1	100	96.542	ENSCJAG00000002868	SMARCA1	100	96.542	Callithrix_jacchus
ENSCCAG00000030817	SMARCA1	100	85.332	ENSCAFG00000018673	SMARCA1	99	85.294	Canis_familiaris
ENSCCAG00000030817	SMARCA1	100	95.463	ENSCAFG00020001751	SMARCA1	100	95.463	Canis_lupus_dingo
ENSCCAG00000030817	SMARCA1	100	93.685	ENSCHIG00000009837	SMARCA1	98	94.236	Capra_hircus
ENSCCAG00000030817	SMARCA1	97	93.193	ENSTSYG00000004240	SMARCA1	98	94.807	Carlito_syrichta
ENSCCAG00000030817	SMARCA1	96	93.671	ENSCPOG00000013601	SMARCA1	95	93.930	Cavia_porcellus
ENSCCAG00000030817	SMARCA1	100	96.729	ENSCATG00000015921	SMARCA1	100	96.729	Cercocebus_atys
ENSCCAG00000030817	SMARCA1	98	93.931	ENSCLAG00000002171	SMARCA1	98	93.931	Chinchilla_lanigera
ENSCCAG00000030817	SMARCA1	100	96.692	ENSCSAG00000008460	SMARCA1	100	96.692	Chlorocebus_sabaeus
ENSCCAG00000030817	SMARCA1	95	89.710	ENSCPBG00000001146	SMARCA1	94	89.790	Chrysemys_picta_bellii
ENSCCAG00000030817	SMARCA1	92	70.707	ENSCING00000004110	swi/snf	97	71.370	Ciona_intestinalis
ENSCCAG00000030817	SMARCA1	92	70.325	ENSCSAVG00000004620	-	100	71.269	Ciona_savignyi
ENSCCAG00000030817	SMARCA1	100	96.692	ENSCANG00000007183	SMARCA1	100	96.692	Colobus_angolensis_palliatus
ENSCCAG00000030817	SMARCA1	100	92.729	ENSCGRG00001010776	Smarca1	98	93.070	Cricetulus_griseus_chok1gshd
ENSCCAG00000030817	SMARCA1	93	92.663	ENSCGRG00000015301	Smarca1	98	93.117	Cricetulus_griseus_crigri
ENSCCAG00000030817	SMARCA1	92	81.045	ENSCSEG00000000328	smarca5	95	80.485	Cynoglossus_semilaevis
ENSCCAG00000030817	SMARCA1	93	80.346	ENSCVAG00000008668	smarca5	99	80.565	Cyprinodon_variegatus
ENSCCAG00000030817	SMARCA1	93	82.510	ENSDARG00000012776	smarca1	97	82.510	Danio_rerio
ENSCCAG00000030817	SMARCA1	93	79.798	ENSDARG00000052348	smarca5	95	79.798	Danio_rerio
ENSCCAG00000030817	SMARCA1	96	93.005	ENSDNOG00000004315	SMARCA1	98	93.005	Dasypus_novemcinctus
ENSCCAG00000030817	SMARCA1	98	93.140	ENSDORG00000009270	Smarca1	97	93.103	Dipodomys_ordii
ENSCCAG00000030817	SMARCA1	92	70.624	FBgn0011604	Iswi	98	69.832	Drosophila_melanogaster
ENSCCAG00000030817	SMARCA1	75	93.750	ENSETEG00000017426	SMARCA1	81	93.750	Echinops_telfairi
ENSCCAG00000030817	SMARCA1	92	78.243	ENSEBUG00000001239	smarca5	96	78.243	Eptatretus_burgeri
ENSCCAG00000030817	SMARCA1	94	89.268	ENSEASG00005008218	SMARCA1	100	90.000	Equus_asinus_asinus
ENSCCAG00000030817	SMARCA1	100	94.816	ENSECAG00000012106	SMARCA1	100	94.816	Equus_caballus
ENSCCAG00000030817	SMARCA1	77	97.351	ENSEEUG00000014927	SMARCA1	83	97.351	Erinaceus_europaeus
ENSCCAG00000030817	SMARCA1	94	83.749	ENSELUG00000010515	smarca1	98	83.749	Esox_lucius
ENSCCAG00000030817	SMARCA1	100	95.463	ENSFCAG00000018496	SMARCA1	100	95.463	Felis_catus
ENSCCAG00000030817	SMARCA1	86	90.481	ENSFALG00000000209	SMARCA1	98	90.581	Ficedula_albicollis
ENSCCAG00000030817	SMARCA1	92	94.450	ENSFDAG00000009818	SMARCA1	97	94.534	Fukomys_damarensis
ENSCCAG00000030817	SMARCA1	99	76.527	ENSFHEG00000007687	smarca5	94	80.101	Fundulus_heteroclitus
ENSCCAG00000030817	SMARCA1	94	88.016	ENSGALG00000008431	SMARCA1	96	89.938	Gallus_gallus
ENSCCAG00000030817	SMARCA1	93	80.754	ENSGAFG00000017731	smarca5	95	80.101	Gambusia_affinis
ENSCCAG00000030817	SMARCA1	92	90.432	ENSGAGG00000023575	SMARCA1	100	90.432	Gopherus_agassizii
ENSCCAG00000030817	SMARCA1	69	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSCCAG00000030817	SMARCA1	98	93.931	ENSHGLG00000003080	SMARCA1	98	93.931	Heterocephalus_glaber_female
ENSCCAG00000030817	SMARCA1	94	93.506	ENSHGLG00100001102	SMARCA1	100	93.506	Heterocephalus_glaber_male
ENSCCAG00000030817	SMARCA1	92	80.879	ENSHCOG00000005458	smarca5	95	80.101	Hippocampus_comes
ENSCCAG00000030817	SMARCA1	95	82.277	ENSIPUG00000016905	Smarca1	99	83.963	Ictalurus_punctatus
ENSCCAG00000030817	SMARCA1	96	78.458	ENSIPUG00000005229	SMARCA5	97	79.919	Ictalurus_punctatus
ENSCCAG00000030817	SMARCA1	100	95.085	ENSSTOG00000014524	SMARCA1	100	95.085	Ictidomys_tridecemlineatus
ENSCCAG00000030817	SMARCA1	98	93.001	ENSJJAG00000002593	Smarca1	98	92.905	Jaculus_jaculus
ENSCCAG00000030817	SMARCA1	92	80.982	ENSKMAG00000003777	smarca5	95	80.202	Kryptolebias_marmoratus
ENSCCAG00000030817	SMARCA1	88	81.096	ENSLBEG00000013295	SMARCA1	100	81.669	Labrus_bergylta
ENSCCAG00000030817	SMARCA1	93	80.000	ENSLBEG00000018112	smarca5	95	80.000	Labrus_bergylta
ENSCCAG00000030817	SMARCA1	96	86.193	ENSLACG00000016697	SMARCA1	98	87.087	Latimeria_chalumnae
ENSCCAG00000030817	SMARCA1	94	85.843	ENSLOCG00000014591	smarca1	97	85.843	Lepisosteus_oculatus
ENSCCAG00000030817	SMARCA1	94	93.340	ENSLAFG00000000896	SMARCA1	99	93.333	Loxodonta_africana
ENSCCAG00000030817	SMARCA1	100	96.786	ENSMFAG00000002117	SMARCA1	100	96.729	Macaca_fascicularis
ENSCCAG00000030817	SMARCA1	100	96.729	ENSMMUG00000008818	SMARCA1	100	96.729	Macaca_mulatta
ENSCCAG00000030817	SMARCA1	100	96.729	ENSMNEG00000041768	SMARCA1	100	96.729	Macaca_nemestrina
ENSCCAG00000030817	SMARCA1	100	96.692	ENSMLEG00000043198	SMARCA1	100	96.692	Mandrillus_leucophaeus
ENSCCAG00000030817	SMARCA1	93	81.059	ENSMAMG00000014294	smarca5	96	79.980	Mastacembelus_armatus
ENSCCAG00000030817	SMARCA1	96	78.508	ENSMZEG00005009369	smarca5	95	80.444	Maylandia_zebra
ENSCCAG00000030817	SMARCA1	95	88.276	ENSMGAG00000007042	SMARCA1	99	88.427	Meleagris_gallopavo
ENSCCAG00000030817	SMARCA1	98	92.932	ENSMAUG00000008133	Smarca1	97	93.281	Mesocricetus_auratus
ENSCCAG00000030817	SMARCA1	100	95.085	ENSMICG00000015768	SMARCA1	100	95.085	Microcebus_murinus
ENSCCAG00000030817	SMARCA1	100	92.474	ENSMOCG00000009464	Smarca1	98	92.809	Microtus_ochrogaster
ENSCCAG00000030817	SMARCA1	93	78.607	ENSMMOG00000005547	smarca5	99	78.607	Mola_mola
ENSCCAG00000030817	SMARCA1	98	86.654	ENSMODG00000013187	-	99	86.641	Monodelphis_domestica
ENSCCAG00000030817	SMARCA1	92	80.675	ENSMALG00000002081	smarca5	97	80.247	Monopterus_albus
ENSCCAG00000030817	SMARCA1	100	92.662	MGP_CAROLIEiJ_G0033034	Smarca1	98	92.905	Mus_caroli
ENSCCAG00000030817	SMARCA1	100	92.662	ENSMUSG00000031099	Smarca1	98	92.905	Mus_musculus
ENSCCAG00000030817	SMARCA1	100	92.756	MGP_PahariEiJ_G0031579	Smarca1	98	92.905	Mus_pahari
ENSCCAG00000030817	SMARCA1	100	92.756	MGP_SPRETEiJ_G0034192	Smarca1	98	93.001	Mus_spretus
ENSCCAG00000030817	SMARCA1	100	94.953	ENSMPUG00000017423	SMARCA1	95	94.953	Mustela_putorius_furo
ENSCCAG00000030817	SMARCA1	100	91.511	ENSMLUG00000029614	SMARCA1	100	90.951	Myotis_lucifugus
ENSCCAG00000030817	SMARCA1	96	93.786	ENSNGAG00000006492	Smarca1	97	93.963	Nannospalax_galili
ENSCCAG00000030817	SMARCA1	93	81.059	ENSNBRG00000004463	smarca5	99	80.404	Neolamprologus_brichardi
ENSCCAG00000030817	SMARCA1	100	96.429	ENSNLEG00000015179	SMARCA1	100	96.429	Nomascus_leucogenys
ENSCCAG00000030817	SMARCA1	89	78.887	ENSMEUG00000008819	SMARCA1	99	78.864	Notamacropus_eugenii
ENSCCAG00000030817	SMARCA1	96	93.184	ENSODEG00000012163	SMARCA1	97	92.989	Octodon_degus
ENSCCAG00000030817	SMARCA1	96	78.606	ENSONIG00000009993	smarca5	95	80.544	Oreochromis_niloticus
ENSCCAG00000030817	SMARCA1	92	90.741	ENSOANG00000002862	SMARCA1	100	90.741	Ornithorhynchus_anatinus
ENSCCAG00000030817	SMARCA1	98	92.411	ENSOCUG00000001047	SMARCA1	98	92.100	Oryctolagus_cuniculus
ENSCCAG00000030817	SMARCA1	92	80.982	ENSORLG00000021998	smarca5	95	80.202	Oryzias_latipes
ENSCCAG00000030817	SMARCA1	92	81.084	ENSORLG00020017679	smarca5	95	80.303	Oryzias_latipes_hni
ENSCCAG00000030817	SMARCA1	92	80.982	ENSORLG00015017210	smarca5	95	80.101	Oryzias_latipes_hsok
ENSCCAG00000030817	SMARCA1	92	80.982	ENSOMEG00000000086	smarca5	95	80.101	Oryzias_melastigma
ENSCCAG00000030817	SMARCA1	98	95.129	ENSOGAG00000004399	SMARCA1	99	95.129	Otolemur_garnettii
ENSCCAG00000030817	SMARCA1	94	93.978	ENSOARG00000014638	SMARCA1	100	95.408	Ovis_aries
ENSCCAG00000030817	SMARCA1	100	96.786	ENSPPAG00000034647	SMARCA1	100	96.786	Pan_paniscus
ENSCCAG00000030817	SMARCA1	100	95.463	ENSPPRG00000008929	SMARCA1	100	95.463	Panthera_pardus
ENSCCAG00000030817	SMARCA1	94	93.811	ENSPTIG00000000915	SMARCA1	98	93.805	Panthera_tigris_altaica
ENSCCAG00000030817	SMARCA1	100	96.786	ENSPTRG00000049876	SMARCA1	100	96.729	Pan_troglodytes
ENSCCAG00000030817	SMARCA1	100	96.786	ENSPANG00000003871	SMARCA1	100	96.786	Papio_anubis
ENSCCAG00000030817	SMARCA1	89	84.249	ENSPKIG00000013411	smarca1	98	84.008	Paramormyrops_kingsleyae
ENSCCAG00000030817	SMARCA1	95	88.746	ENSPSIG00000010101	SMARCA1	100	90.123	Pelodiscus_sinensis
ENSCCAG00000030817	SMARCA1	98	93.601	ENSPEMG00000017503	Smarca1	97	94.060	Peromyscus_maniculatus_bairdii
ENSCCAG00000030817	SMARCA1	95	89.111	ENSPCIG00000015460	SMARCA1	98	89.189	Phascolarctos_cinereus
ENSCCAG00000030817	SMARCA1	92	80.982	ENSPFOG00000007649	smarca5	95	80.101	Poecilia_formosa
ENSCCAG00000030817	SMARCA1	92	80.982	ENSPLAG00000003363	smarca5	95	80.101	Poecilia_latipinna
ENSCCAG00000030817	SMARCA1	92	80.879	ENSPMEG00000019849	smarca5	95	80.000	Poecilia_mexicana
ENSCCAG00000030817	SMARCA1	92	80.879	ENSPREG00000023250	smarca5	95	80.000	Poecilia_reticulata
ENSCCAG00000030817	SMARCA1	100	94.045	ENSPPYG00000020703	SMARCA1	100	94.045	Pongo_abelii
ENSCCAG00000030817	SMARCA1	76	88.546	ENSPCOG00000020722	SMARCA1	94	96.818	Propithecus_coquereli
ENSCCAG00000030817	SMARCA1	92	93.419	ENSPVAG00000003805	SMARCA1	94	93.419	Pteropus_vampyrus
ENSCCAG00000030817	SMARCA1	55	80.717	ENSPNYG00000012299	smarca5	92	80.717	Pundamilia_nyererei
ENSCCAG00000030817	SMARCA1	100	93.195	ENSRNOG00000003762	Smarca1	98	93.353	Rattus_norvegicus
ENSCCAG00000030817	SMARCA1	100	96.692	ENSRROG00000034167	SMARCA1	100	96.692	Rhinopithecus_roxellana
ENSCCAG00000030817	SMARCA1	96	95.257	ENSSBOG00000020641	SMARCA1	100	96.531	Saimiri_boliviensis_boliviensis
ENSCCAG00000030817	SMARCA1	92	83.967	ENSSHAG00000013518	SMARCA1	99	83.967	Sarcophilus_harrisii
ENSCCAG00000030817	SMARCA1	98	81.471	ENSSFOG00015009043	smarca1	98	84.669	Scleropages_formosus
ENSCCAG00000030817	SMARCA1	95	79.362	ENSSFOG00015016794	smarca5	100	80.928	Scleropages_formosus
ENSCCAG00000030817	SMARCA1	93	79.737	ENSSMAG00000004801	smarca5	95	79.737	Scophthalmus_maximus
ENSCCAG00000030817	SMARCA1	93	80.550	ENSSDUG00000020690	smarca5	96	79.899	Seriola_dumerili
ENSCCAG00000030817	SMARCA1	93	80.550	ENSSLDG00000025190	smarca5	96	79.899	Seriola_lalandi_dorsalis
ENSCCAG00000030817	SMARCA1	84	90.275	ENSSARG00000000842	SMARCA1	88	90.275	Sorex_araneus
ENSCCAG00000030817	SMARCA1	92	89.048	ENSSPUG00000000590	SMARCA1	94	89.026	Sphenodon_punctatus
ENSCCAG00000030817	SMARCA1	93	80.652	ENSSPAG00000002894	smarca5	97	81.291	Stegastes_partitus
ENSCCAG00000030817	SMARCA1	98	94.509	ENSSSCG00000012649	SMARCA1	99	94.509	Sus_scrofa
ENSCCAG00000030817	SMARCA1	93	89.929	ENSTGUG00000003899	-	100	89.929	Taeniopygia_guttata
ENSCCAG00000030817	SMARCA1	93	80.754	ENSTRUG00000014094	smarca5	95	80.101	Takifugu_rubripes
ENSCCAG00000030817	SMARCA1	92	79.816	ENSTNIG00000017717	smarca5	94	78.889	Tetraodon_nigroviridis
ENSCCAG00000030817	SMARCA1	92	87.867	ENSTBEG00000014973	SMARCA1	99	87.867	Tupaia_belangeri
ENSCCAG00000030817	SMARCA1	92	91.760	ENSTTRG00000006168	SMARCA1	99	91.760	Tursiops_truncatus
ENSCCAG00000030817	SMARCA1	100	94.896	ENSUAMG00000020201	SMARCA1	100	94.896	Ursus_americanus
ENSCCAG00000030817	SMARCA1	94	90.711	ENSUMAG00000004073	SMARCA1	99	90.702	Ursus_maritimus
ENSCCAG00000030817	SMARCA1	77	99.351	ENSVPAG00000010492	-	85	99.351	Vicugna_pacos
ENSCCAG00000030817	SMARCA1	94	95.600	ENSVVUG00000008878	SMARCA1	99	95.600	Vulpes_vulpes
ENSCCAG00000030817	SMARCA1	94	86.432	ENSXETG00000001526	smarca1	99	86.432	Xenopus_tropicalis
ENSCCAG00000030817	SMARCA1	93	80.652	ENSXCOG00000011170	smarca5	98	80.000	Xiphophorus_couchianus
ENSCCAG00000030817	SMARCA1	93	80.652	ENSXMAG00000009678	smarca5	97	82.127	Xiphophorus_maculatus