EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000032006 (Gene tree)
Gene ID: 108283321
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 24547 bases
Position: chrKV389684.1:2282146-2306692
Accession: 108283321
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000028189	PRP21_like_P	PF12230.8	1.4e-51	1	1
ENSCCAP00000028189	Surp	PF01805.20	9.4e-46	1	2
ENSCCAP00000028189	Surp	PF01805.20	9.4e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000045824	SF3A1-201	2948	XM_017499601	ENSCCAP00000028189	793 (aa)	XP_017355090	A0A2K5RJ88

Gene Model

Click here to download ENSCCAG00000032006's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000032006's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000032006	SF3A1	100	99.117	ENSG00000099995	SF3A1	100	99.117	Homo_sapiens
ENSCCAG00000032006	SF3A1	100	83.522	ENSAPOG00000020465	sf3a1	99	84.910	Acanthochromis_polyacanthus
ENSCCAG00000032006	SF3A1	100	98.491	ENSAMEG00000007737	SF3A1	100	98.491	Ailuropoda_melanoleuca
ENSCCAG00000032006	SF3A1	100	84.528	ENSACIG00000020672	sf3a1	98	85.938	Amphilophus_citrinellus
ENSCCAG00000032006	SF3A1	100	83.250	ENSAOCG00000003060	sf3a1	99	84.910	Amphiprion_ocellaris
ENSCCAG00000032006	SF3A1	100	83.375	ENSAPEG00000010735	sf3a1	99	85.038	Amphiprion_percula
ENSCCAG00000032006	SF3A1	97	86.086	ENSATEG00000021201	sf3a1	97	86.216	Anabas_testudineus
ENSCCAG00000032006	SF3A1	95	94.452	ENSAPLG00000009057	SF3A1	99	93.532	Anas_platyrhynchos
ENSCCAG00000032006	SF3A1	100	85.591	ENSACAG00000009415	SF3A1	100	86.946	Anolis_carolinensis
ENSCCAG00000032006	SF3A1	100	100.000	ENSANAG00000032045	SF3A1	100	100.000	Aotus_nancymaae
ENSCCAG00000032006	SF3A1	100	84.355	ENSACLG00000012622	sf3a1	99	85.403	Astatotilapia_calliptera
ENSCCAG00000032006	SF3A1	99	83.186	ENSAMXG00000005382	sf3a1	99	84.041	Astyanax_mexicanus
ENSCCAG00000032006	SF3A1	100	98.991	ENSBTAG00000003390	SF3A1	100	98.991	Bos_taurus
ENSCCAG00000032006	SF3A1	84	43.268	WBGene00004188	prp-21	94	43.321	Caenorhabditis_elegans
ENSCCAG00000032006	SF3A1	100	99.748	ENSCJAG00000010370	SF3A1	100	99.748	Callithrix_jacchus
ENSCCAG00000032006	SF3A1	100	98.991	ENSCAFG00000012559	SF3A1	100	98.991	Canis_familiaris
ENSCCAG00000032006	SF3A1	100	98.991	ENSCAFG00020000838	SF3A1	100	98.991	Canis_lupus_dingo
ENSCCAG00000032006	SF3A1	100	98.865	ENSCHIG00000018642	SF3A1	100	98.865	Capra_hircus
ENSCCAG00000032006	SF3A1	100	99.117	ENSTSYG00000004739	SF3A1	100	99.117	Carlito_syrichta
ENSCCAG00000032006	SF3A1	94	81.175	ENSCAPG00000015414	SF3A1	98	81.175	Cavia_aperea
ENSCCAG00000032006	SF3A1	100	98.739	ENSCPOG00000014589	SF3A1	100	98.739	Cavia_porcellus
ENSCCAG00000032006	SF3A1	100	99.243	ENSCATG00000029241	SF3A1	100	99.243	Cercocebus_atys
ENSCCAG00000032006	SF3A1	100	98.235	ENSCLAG00000006508	SF3A1	100	98.235	Chinchilla_lanigera
ENSCCAG00000032006	SF3A1	100	99.369	ENSCSAG00000009470	SF3A1	100	99.369	Chlorocebus_sabaeus
ENSCCAG00000032006	SF3A1	61	100.000	ENSCHOG00000005201	SF3A1	69	100.000	Choloepus_hoffmanni
ENSCCAG00000032006	SF3A1	100	91.184	ENSCPBG00000007595	SF3A1	100	91.310	Chrysemys_picta_bellii
ENSCCAG00000032006	SF3A1	94	52.381	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSCCAG00000032006	SF3A1	96	51.742	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSCCAG00000032006	SF3A1	100	99.369	ENSCANG00000033564	SF3A1	100	99.369	Colobus_angolensis_palliatus
ENSCCAG00000032006	SF3A1	100	98.361	ENSCGRG00001008933	Sf3a1	100	98.361	Cricetulus_griseus_chok1gshd
ENSCCAG00000032006	SF3A1	100	98.361	ENSCGRG00000006127	Sf3a1	100	98.361	Cricetulus_griseus_crigri
ENSCCAG00000032006	SF3A1	100	81.658	ENSCSEG00000010792	sf3a1	98	82.965	Cynoglossus_semilaevis
ENSCCAG00000032006	SF3A1	100	82.893	ENSCVAG00000004560	sf3a1	98	84.245	Cyprinodon_variegatus
ENSCCAG00000032006	SF3A1	100	82.286	ENSDARG00000041887	sf3a1	97	84.615	Danio_rerio
ENSCCAG00000032006	SF3A1	100	98.616	ENSDNOG00000010629	SF3A1	100	98.616	Dasypus_novemcinctus
ENSCCAG00000032006	SF3A1	100	99.243	ENSDORG00000005613	Sf3a1	100	99.243	Dipodomys_ordii
ENSCCAG00000032006	SF3A1	79	61.495	FBgn0266917	Sf3a1	85	59.386	Drosophila_melanogaster
ENSCCAG00000032006	SF3A1	89	96.296	ENSETEG00000017194	SF3A1	100	96.296	Echinops_telfairi
ENSCCAG00000032006	SF3A1	98	65.981	ENSEBUG00000001285	sf3a1	96	67.120	Eptatretus_burgeri
ENSCCAG00000032006	SF3A1	100	99.117	ENSEASG00005010254	SF3A1	100	99.117	Equus_asinus_asinus
ENSCCAG00000032006	SF3A1	100	99.117	ENSECAG00000023962	SF3A1	100	99.117	Equus_caballus
ENSCCAG00000032006	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSCCAG00000032006	SF3A1	100	82.331	ENSELUG00000022578	sf3a1	97	83.854	Esox_lucius
ENSCCAG00000032006	SF3A1	100	98.991	ENSFCAG00000011932	SF3A1	100	98.991	Felis_catus
ENSCCAG00000032006	SF3A1	95	93.519	ENSFALG00000006944	SF3A1	100	92.191	Ficedula_albicollis
ENSCCAG00000032006	SF3A1	100	98.613	ENSFDAG00000009560	SF3A1	100	98.613	Fukomys_damarensis
ENSCCAG00000032006	SF3A1	100	84.025	ENSFHEG00000010866	sf3a1	98	85.286	Fundulus_heteroclitus
ENSCCAG00000032006	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	97	81.323	Gadus_morhua
ENSCCAG00000032006	SF3A1	95	94.444	ENSGALG00000007937	SF3A1	100	92.695	Gallus_gallus
ENSCCAG00000032006	SF3A1	100	82.772	ENSGAFG00000009111	sf3a1	99	83.397	Gambusia_affinis
ENSCCAG00000032006	SF3A1	100	81.990	ENSGACG00000011893	sf3a1	97	83.377	Gasterosteus_aculeatus
ENSCCAG00000032006	SF3A1	96	91.196	ENSGAGG00000000762	SF3A1	99	91.327	Gopherus_agassizii
ENSCCAG00000032006	SF3A1	100	99.117	ENSGGOG00000012631	SF3A1	100	99.117	Gorilla_gorilla
ENSCCAG00000032006	SF3A1	100	84.355	ENSHBUG00000015795	sf3a1	99	85.403	Haplochromis_burtoni
ENSCCAG00000032006	SF3A1	100	98.865	ENSHGLG00000007907	SF3A1	100	98.865	Heterocephalus_glaber_female
ENSCCAG00000032006	SF3A1	100	98.865	ENSHGLG00100013799	SF3A1	100	98.865	Heterocephalus_glaber_male
ENSCCAG00000032006	SF3A1	100	80.377	ENSHCOG00000015423	sf3a1	99	80.774	Hippocampus_comes
ENSCCAG00000032006	SF3A1	96	82.422	ENSIPUG00000002470	sf3a1	98	82.682	Ictalurus_punctatus
ENSCCAG00000032006	SF3A1	100	99.117	ENSSTOG00000013892	SF3A1	100	99.117	Ictidomys_tridecemlineatus
ENSCCAG00000032006	SF3A1	100	98.992	ENSJJAG00000022566	Sf3a1	100	98.992	Jaculus_jaculus
ENSCCAG00000032006	SF3A1	100	82.893	ENSKMAG00000002400	sf3a1	98	84.635	Kryptolebias_marmoratus
ENSCCAG00000032006	SF3A1	100	82.642	ENSLBEG00000022974	sf3a1	99	83.184	Labrus_bergylta
ENSCCAG00000032006	SF3A1	100	87.077	ENSLACG00000003565	SF3A1	97	88.281	Latimeria_chalumnae
ENSCCAG00000032006	SF3A1	100	84.837	ENSLOCG00000008251	sf3a1	97	86.623	Lepisosteus_oculatus
ENSCCAG00000032006	SF3A1	98	62.038	ENSLAFG00000026032	-	97	62.468	Loxodonta_africana
ENSCCAG00000032006	SF3A1	100	99.117	ENSLAFG00000000448	SF3A1	100	99.117	Loxodonta_africana
ENSCCAG00000032006	SF3A1	100	99.243	ENSMFAG00000031979	SF3A1	100	99.243	Macaca_fascicularis
ENSCCAG00000032006	SF3A1	100	99.243	ENSMMUG00000005547	SF3A1	100	99.243	Macaca_mulatta
ENSCCAG00000032006	SF3A1	100	99.117	ENSMNEG00000037229	SF3A1	100	99.117	Macaca_nemestrina
ENSCCAG00000032006	SF3A1	100	99.369	ENSMLEG00000041908	SF3A1	100	99.369	Mandrillus_leucophaeus
ENSCCAG00000032006	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.899	Mastacembelus_armatus
ENSCCAG00000032006	SF3A1	100	84.355	ENSMZEG00005009633	sf3a1	99	85.403	Maylandia_zebra
ENSCCAG00000032006	SF3A1	95	94.444	ENSMGAG00000001330	SF3A1	100	93.523	Meleagris_gallopavo
ENSCCAG00000032006	SF3A1	92	94.945	ENSMAUG00000020317	Sf3a1	94	94.945	Mesocricetus_auratus
ENSCCAG00000032006	SF3A1	100	99.243	ENSMICG00000010038	SF3A1	100	99.243	Microcebus_murinus
ENSCCAG00000032006	SF3A1	100	98.487	ENSMOCG00000008438	Sf3a1	100	98.487	Microtus_ochrogaster
ENSCCAG00000032006	SF3A1	100	81.635	ENSMMOG00000015588	sf3a1	98	82.239	Mola_mola
ENSCCAG00000032006	SF3A1	100	97.982	ENSMODG00000009270	SF3A1	100	97.982	Monodelphis_domestica
ENSCCAG00000032006	SF3A1	100	84.257	ENSMALG00000000148	sf3a1	99	85.831	Monopterus_albus
ENSCCAG00000032006	SF3A1	100	98.108	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.108	Mus_caroli
ENSCCAG00000032006	SF3A1	100	98.108	ENSMUSG00000002129	Sf3a1	100	98.108	Mus_musculus
ENSCCAG00000032006	SF3A1	100	97.982	MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	Mus_pahari
ENSCCAG00000032006	SF3A1	100	98.108	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.108	Mus_spretus
ENSCCAG00000032006	SF3A1	100	98.991	ENSMPUG00000013144	SF3A1	100	98.991	Mustela_putorius_furo
ENSCCAG00000032006	SF3A1	100	99.117	ENSMLUG00000002139	SF3A1	100	99.117	Myotis_lucifugus
ENSCCAG00000032006	SF3A1	100	98.739	ENSNGAG00000016977	Sf3a1	100	98.739	Nannospalax_galili
ENSCCAG00000032006	SF3A1	100	84.761	ENSNBRG00000016642	sf3a1	99	84.930	Neolamprologus_brichardi
ENSCCAG00000032006	SF3A1	100	99.369	ENSNLEG00000003686	SF3A1	100	99.369	Nomascus_leucogenys
ENSCCAG00000032006	SF3A1	96	88.158	ENSMEUG00000008741	SF3A1	100	88.158	Notamacropus_eugenii
ENSCCAG00000032006	SF3A1	100	98.739	ENSOPRG00000016636	SF3A1	100	98.739	Ochotona_princeps
ENSCCAG00000032006	SF3A1	100	98.739	ENSODEG00000002571	SF3A1	100	98.739	Octodon_degus
ENSCCAG00000032006	SF3A1	100	84.250	ENSONIG00000010848	sf3a1	99	84.783	Oreochromis_niloticus
ENSCCAG00000032006	SF3A1	100	98.865	ENSOCUG00000007633	SF3A1	100	98.865	Oryctolagus_cuniculus
ENSCCAG00000032006	SF3A1	96	81.759	ENSORLG00000013050	sf3a1	99	83.311	Oryzias_latipes
ENSCCAG00000032006	SF3A1	99	80.253	ENSORLG00020003236	sf3a1	94	83.445	Oryzias_latipes_hni
ENSCCAG00000032006	SF3A1	100	82.390	ENSORLG00015017411	sf3a1	99	83.632	Oryzias_latipes_hsok
ENSCCAG00000032006	SF3A1	100	82.642	ENSOMEG00000013362	sf3a1	99	83.484	Oryzias_melastigma
ENSCCAG00000032006	SF3A1	100	98.865	ENSOGAG00000012931	SF3A1	100	98.865	Otolemur_garnettii
ENSCCAG00000032006	SF3A1	100	97.100	ENSOARG00000006849	SF3A1	100	97.100	Ovis_aries
ENSCCAG00000032006	SF3A1	100	98.108	ENSPPAG00000041790	SF3A1	100	98.108	Pan_paniscus
ENSCCAG00000032006	SF3A1	100	98.991	ENSPPRG00000004391	SF3A1	100	98.991	Panthera_pardus
ENSCCAG00000032006	SF3A1	97	98.964	ENSPTIG00000000844	SF3A1	100	98.964	Panthera_tigris_altaica
ENSCCAG00000032006	SF3A1	100	99.117	ENSPTRG00000014240	SF3A1	100	99.117	Pan_troglodytes
ENSCCAG00000032006	SF3A1	100	99.369	ENSPANG00000020772	SF3A1	100	99.369	Papio_anubis
ENSCCAG00000032006	SF3A1	83	93.407	ENSPSIG00000012803	SF3A1	96	94.329	Pelodiscus_sinensis
ENSCCAG00000032006	SF3A1	96	84.162	ENSPMGG00000023096	sf3a1	100	84.162	Periophthalmus_magnuspinnatus
ENSCCAG00000032006	SF3A1	100	98.613	ENSPEMG00000009494	Sf3a1	100	98.613	Peromyscus_maniculatus_bairdii
ENSCCAG00000032006	SF3A1	69	77.858	ENSPMAG00000007139	-	90	77.757	Petromyzon_marinus
ENSCCAG00000032006	SF3A1	100	97.856	ENSPCIG00000022692	SF3A1	100	97.856	Phascolarctos_cinereus
ENSCCAG00000032006	SF3A1	100	75.000	ENSPFOG00000016768	sf3a1	93	78.912	Poecilia_formosa
ENSCCAG00000032006	SF3A1	100	83.648	ENSPLAG00000017268	sf3a1	99	83.653	Poecilia_latipinna
ENSCCAG00000032006	SF3A1	96	85.994	ENSPMEG00000019811	sf3a1	98	85.241	Poecilia_mexicana
ENSCCAG00000032006	SF3A1	100	83.774	ENSPREG00000010347	sf3a1	99	84.036	Poecilia_reticulata
ENSCCAG00000032006	SF3A1	100	99.369	ENSPPYG00000011707	SF3A1	100	99.369	Pongo_abelii
ENSCCAG00000032006	SF3A1	57	100.000	ENSPCAG00000003266	SF3A1	57	100.000	Procavia_capensis
ENSCCAG00000032006	SF3A1	100	99.243	ENSPCOG00000026630	SF3A1	100	99.243	Propithecus_coquereli
ENSCCAG00000032006	SF3A1	100	94.704	ENSPVAG00000017719	SF3A1	94	98.121	Pteropus_vampyrus
ENSCCAG00000032006	SF3A1	100	84.355	ENSPNYG00000018706	sf3a1	99	85.403	Pundamilia_nyererei
ENSCCAG00000032006	SF3A1	96	85.176	ENSPNAG00000003721	sf3a1	98	85.046	Pygocentrus_nattereri
ENSCCAG00000032006	SF3A1	100	98.235	ENSRNOG00000005218	Sf3a1	100	98.235	Rattus_norvegicus
ENSCCAG00000032006	SF3A1	100	99.369	ENSRBIG00000032167	SF3A1	100	99.369	Rhinopithecus_bieti
ENSCCAG00000032006	SF3A1	100	99.369	ENSRROG00000044908	SF3A1	100	99.369	Rhinopithecus_roxellana
ENSCCAG00000032006	SF3A1	97	95.607	ENSSBOG00000021960	SF3A1	100	100.000	Saimiri_boliviensis_boliviensis
ENSCCAG00000032006	SF3A1	99	93.291	ENSSHAG00000003666	SF3A1	98	95.213	Sarcophilus_harrisii
ENSCCAG00000032006	SF3A1	100	83.354	ENSSFOG00015004579	sf3a1	97	85.714	Scleropages_formosus
ENSCCAG00000032006	SF3A1	100	81.887	ENSSMAG00000004275	sf3a1	97	83.007	Scophthalmus_maximus
ENSCCAG00000032006	SF3A1	100	83.875	ENSSDUG00000022219	sf3a1	99	84.527	Seriola_dumerili
ENSCCAG00000032006	SF3A1	100	83.875	ENSSLDG00000012642	sf3a1	99	84.527	Seriola_lalandi_dorsalis
ENSCCAG00000032006	SF3A1	97	95.725	ENSSARG00000005960	SF3A1	100	95.725	Sorex_araneus
ENSCCAG00000032006	SF3A1	96	91.969	ENSSPUG00000018863	SF3A1	100	91.542	Sphenodon_punctatus
ENSCCAG00000032006	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	84.910	Stegastes_partitus
ENSCCAG00000032006	SF3A1	100	98.865	ENSSSCG00000010002	SF3A1	100	98.865	Sus_scrofa
ENSCCAG00000032006	SF3A1	95	94.327	ENSTGUG00000010547	SF3A1	99	93.904	Taeniopygia_guttata
ENSCCAG00000032006	SF3A1	100	81.509	ENSTRUG00000006118	sf3a1	97	82.222	Takifugu_rubripes
ENSCCAG00000032006	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSCCAG00000032006	SF3A1	100	91.551	ENSTBEG00000012771	SF3A1	100	91.551	Tupaia_belangeri
ENSCCAG00000032006	SF3A1	100	98.866	ENSTTRG00000001535	SF3A1	100	98.866	Tursiops_truncatus
ENSCCAG00000032006	SF3A1	99	97.967	ENSUAMG00000006750	SF3A1	99	97.967	Ursus_americanus
ENSCCAG00000032006	SF3A1	99	98.214	ENSUMAG00000016665	SF3A1	99	98.214	Ursus_maritimus
ENSCCAG00000032006	SF3A1	100	98.991	ENSVVUG00000003075	SF3A1	100	98.991	Vulpes_vulpes
ENSCCAG00000032006	SF3A1	100	85.822	ENSXETG00000016144	sf3a1	100	85.320	Xenopus_tropicalis
ENSCCAG00000032006	SF3A1	100	82.522	ENSXCOG00000015653	sf3a1	99	83.142	Xiphophorus_couchianus
ENSCCAG00000032006	SF3A1	100	82.647	ENSXMAG00000002753	sf3a1	99	83.269	Xiphophorus_maculatus