EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000032175 (Gene tree)
Gene ID: 108284566
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 38580 bases
Position: chrKV389706.1:2792636-2831215
Accession: 108284566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000028572	UPF1_Zn_bind	PF09416.10	9.6e-75	1	1
ENSCCAP00000028552	UPF1_Zn_bind	PF09416.10	9.6e-75	1	1
ENSCCAP00000028528	UPF1_Zn_bind	PF09416.10	1e-74	1	1
ENSCCAP00000028572	ResIII	PF04851.15	3.4e-05	1	1
ENSCCAP00000028552	ResIII	PF04851.15	3.4e-05	1	1
ENSCCAP00000028528	ResIII	PF04851.15	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000046201	UPF1-201	7434	-	ENSCCAP00000028528	1151 (aa)	-	A0A2K5RK87
ENSCCAT00000046228	UPF1-202	6699	XM_017501333	ENSCCAP00000028552	1118 (aa)	XP_017356822	A0A2K5RK90
ENSCCAT00000046249	UPF1-203	3366	XM_017501332	ENSCCAP00000028572	1121 (aa)	XP_017356821	A0A2K5RKA9

Gene Model

Click here to download ENSCCAG00000032175's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000032175's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000032175	UPF1	100	100.000	ENSG00000005007	UPF1	100	100.000	Homo_sapiens
ENSCCAG00000032175	UPF1	100	92.507	ENSAPOG00000010916	-	100	92.507	Acanthochromis_polyacanthus
ENSCCAG00000032175	UPF1	100	91.192	ENSAPOG00000023773	upf1	100	91.281	Acanthochromis_polyacanthus
ENSCCAG00000032175	UPF1	100	98.756	ENSAMEG00000011474	UPF1	100	98.756	Ailuropoda_melanoleuca
ENSCCAG00000032175	UPF1	92	95.024	ENSACIG00000010985	-	100	95.122	Amphilophus_citrinellus
ENSCCAG00000032175	UPF1	100	91.022	ENSACIG00000019949	upf1	100	91.370	Amphilophus_citrinellus
ENSCCAG00000032175	UPF1	100	90.706	ENSAOCG00000018519	upf1	100	91.278	Amphiprion_ocellaris
ENSCCAG00000032175	UPF1	100	92.596	ENSAOCG00000006352	-	100	92.596	Amphiprion_ocellaris
ENSCCAG00000032175	UPF1	100	92.596	ENSAPEG00000006292	-	100	92.596	Amphiprion_percula
ENSCCAG00000032175	UPF1	100	90.706	ENSAPEG00000016344	upf1	100	91.278	Amphiprion_percula
ENSCCAG00000032175	UPF1	100	92.596	ENSATEG00000016606	-	100	92.596	Anabas_testudineus
ENSCCAG00000032175	UPF1	100	89.886	ENSATEG00000017867	upf1	100	90.677	Anabas_testudineus
ENSCCAG00000032175	UPF1	94	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSCCAG00000032175	UPF1	96	97.122	ENSANAG00000024107	UPF1	97	97.122	Aotus_nancymaae
ENSCCAG00000032175	UPF1	100	90.756	ENSACLG00000007181	upf1	100	91.103	Astatotilapia_calliptera
ENSCCAG00000032175	UPF1	100	92.328	ENSACLG00000022630	-	100	92.239	Astatotilapia_calliptera
ENSCCAG00000032175	UPF1	100	92.959	ENSAMXG00000042187	upf1	100	93.405	Astyanax_mexicanus
ENSCCAG00000032175	UPF1	100	99.113	ENSBTAG00000020922	UPF1	100	99.113	Bos_taurus
ENSCCAG00000032175	UPF1	89	50.639	WBGene00004880	smg-2	99	48.029	Caenorhabditis_elegans
ENSCCAG00000032175	UPF1	100	99.291	ENSCJAG00000019627	UPF1	100	99.291	Callithrix_jacchus
ENSCCAG00000032175	UPF1	100	99.027	ENSCAFG00000014578	UPF1	100	99.027	Canis_familiaris
ENSCCAG00000032175	UPF1	100	99.643	ENSCAFG00020012347	UPF1	100	99.643	Canis_lupus_dingo
ENSCCAG00000032175	UPF1	100	99.196	ENSCHIG00000011018	UPF1	100	99.196	Capra_hircus
ENSCCAG00000032175	UPF1	96	98.416	ENSTSYG00000008877	UPF1	99	98.416	Carlito_syrichta
ENSCCAG00000032175	UPF1	97	96.494	ENSCAPG00000005758	UPF1	97	96.494	Cavia_aperea
ENSCCAG00000032175	UPF1	100	97.150	ENSCPOG00000025463	UPF1	100	97.150	Cavia_porcellus
ENSCCAG00000032175	UPF1	95	98.411	ENSCATG00000040306	UPF1	98	98.411	Cercocebus_atys
ENSCCAG00000032175	UPF1	96	98.330	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSCCAG00000032175	UPF1	100	99.911	ENSCSAG00000005276	UPF1	100	99.911	Chlorocebus_sabaeus
ENSCCAG00000032175	UPF1	100	96.797	ENSCPBG00000012513	UPF1	100	96.797	Chrysemys_picta_bellii
ENSCCAG00000032175	UPF1	78	78.007	ENSCING00000021399	-	99	78.236	Ciona_intestinalis
ENSCCAG00000032175	UPF1	99	71.972	ENSCSAVG00000006533	-	99	71.972	Ciona_savignyi
ENSCCAG00000032175	UPF1	95	99.252	ENSCANG00000029819	UPF1	99	99.252	Colobus_angolensis_palliatus
ENSCCAG00000032175	UPF1	100	98.569	ENSCGRG00001021067	Upf1	100	98.569	Cricetulus_griseus_chok1gshd
ENSCCAG00000032175	UPF1	95	98.129	ENSCGRG00000013480	Upf1	99	98.129	Cricetulus_griseus_crigri
ENSCCAG00000032175	UPF1	100	86.173	ENSCSEG00000017239	upf1	100	86.262	Cynoglossus_semilaevis
ENSCCAG00000032175	UPF1	100	92.500	ENSCSEG00000016159	-	100	92.411	Cynoglossus_semilaevis
ENSCCAG00000032175	UPF1	100	92.328	ENSCVAG00000010561	upf1	100	92.239	Cyprinodon_variegatus
ENSCCAG00000032175	UPF1	100	92.781	ENSDARG00000016302	upf1	100	93.226	Danio_rerio
ENSCCAG00000032175	UPF1	95	95.884	ENSDORG00000009984	Upf1	96	95.884	Dipodomys_ordii
ENSCCAG00000032175	UPF1	85	70.941	FBgn0030354	Upf1	84	67.433	Drosophila_melanogaster
ENSCCAG00000032175	UPF1	55	85.575	ENSEBUG00000010069	upf1	96	85.413	Eptatretus_burgeri
ENSCCAG00000032175	UPF1	100	99.196	ENSEASG00005006549	UPF1	100	99.196	Equus_asinus_asinus
ENSCCAG00000032175	UPF1	100	99.196	ENSECAG00000010639	UPF1	100	99.196	Equus_caballus
ENSCCAG00000032175	UPF1	100	90.240	ENSELUG00000020917	upf1	100	90.506	Esox_lucius
ENSCCAG00000032175	UPF1	100	91.667	ENSELUG00000012916	-	100	91.585	Esox_lucius
ENSCCAG00000032175	UPF1	100	98.938	ENSFCAG00000009757	UPF1	100	98.938	Felis_catus
ENSCCAG00000032175	UPF1	96	96.756	ENSFALG00000009312	UPF1	99	96.756	Ficedula_albicollis
ENSCCAG00000032175	UPF1	97	97.335	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSCCAG00000032175	UPF1	85	95.477	ENSFHEG00000016276	-	96	95.477	Fundulus_heteroclitus
ENSCCAG00000032175	UPF1	100	88.319	ENSFHEG00000006428	upf1	100	88.319	Fundulus_heteroclitus
ENSCCAG00000032175	UPF1	100	91.904	ENSGMOG00000007541	upf1	100	92.349	Gadus_morhua
ENSCCAG00000032175	UPF1	100	97.676	ENSGALG00000003220	UPF1	100	97.676	Gallus_gallus
ENSCCAG00000032175	UPF1	100	92.232	ENSGAFG00000004831	upf1	100	92.143	Gambusia_affinis
ENSCCAG00000032175	UPF1	62	95.389	ENSGAFG00000015443	-	88	93.026	Gambusia_affinis
ENSCCAG00000032175	UPF1	100	97.143	ENSGAGG00000022217	UPF1	100	97.143	Gopherus_agassizii
ENSCCAG00000032175	UPF1	93	100.000	ENSGGOG00000002608	UPF1	99	100.000	Gorilla_gorilla
ENSCCAG00000032175	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCCAG00000032175	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCCAG00000032175	UPF1	100	98.494	ENSHGLG00000010900	UPF1	100	98.494	Heterocephalus_glaber_female
ENSCCAG00000032175	UPF1	96	95.492	ENSHGLG00100005904	UPF1	99	95.492	Heterocephalus_glaber_male
ENSCCAG00000032175	UPF1	100	91.518	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSCCAG00000032175	UPF1	100	93.405	ENSIPUG00000005108	UPF1	100	93.761	Ictalurus_punctatus
ENSCCAG00000032175	UPF1	100	99.642	ENSSTOG00000009196	UPF1	100	99.642	Ictidomys_tridecemlineatus
ENSCCAG00000032175	UPF1	100	98.752	ENSJJAG00000023151	Upf1	100	98.752	Jaculus_jaculus
ENSCCAG00000032175	UPF1	100	92.685	ENSKMAG00000004962	upf1	100	92.596	Kryptolebias_marmoratus
ENSCCAG00000032175	UPF1	100	92.246	ENSLBEG00000027848	-	100	92.246	Labrus_bergylta
ENSCCAG00000032175	UPF1	100	89.339	ENSLBEG00000014862	upf1	100	90.485	Labrus_bergylta
ENSCCAG00000032175	UPF1	62	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSCCAG00000032175	UPF1	100	95.000	ENSLOCG00000002072	upf1	100	95.000	Lepisosteus_oculatus
ENSCCAG00000032175	UPF1	100	98.316	ENSLAFG00000014963	UPF1	100	98.316	Loxodonta_africana
ENSCCAG00000032175	UPF1	100	100.000	ENSMFAG00000037748	UPF1	100	100.000	Macaca_fascicularis
ENSCCAG00000032175	UPF1	100	99.733	ENSMMUG00000023286	UPF1	100	99.733	Macaca_mulatta
ENSCCAG00000032175	UPF1	100	100.000	ENSMNEG00000000046	UPF1	100	100.000	Macaca_nemestrina
ENSCCAG00000032175	UPF1	94	100.000	ENSMLEG00000028404	UPF1	100	100.000	Mandrillus_leucophaeus
ENSCCAG00000032175	UPF1	100	89.622	ENSMAMG00000006229	upf1	100	90.589	Mastacembelus_armatus
ENSCCAG00000032175	UPF1	100	91.622	ENSMAMG00000006231	-	100	92.068	Mastacembelus_armatus
ENSCCAG00000032175	UPF1	100	89.719	ENSMZEG00005003489	upf1	100	90.901	Maylandia_zebra
ENSCCAG00000032175	UPF1	100	92.328	ENSMZEG00005016386	-	100	92.239	Maylandia_zebra
ENSCCAG00000032175	UPF1	94	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSCCAG00000032175	UPF1	96	97.403	ENSMAUG00000011398	Upf1	97	97.403	Mesocricetus_auratus
ENSCCAG00000032175	UPF1	100	99.553	ENSMICG00000001659	UPF1	100	99.553	Microcebus_murinus
ENSCCAG00000032175	UPF1	100	98.577	ENSMOCG00000005699	Upf1	100	98.577	Microtus_ochrogaster
ENSCCAG00000032175	UPF1	100	90.527	ENSMMOG00000007881	upf1	100	90.982	Mola_mola
ENSCCAG00000032175	UPF1	94	91.548	ENSMMOG00000007537	-	99	92.610	Mola_mola
ENSCCAG00000032175	UPF1	100	97.529	ENSMODG00000003689	UPF1	100	97.529	Monodelphis_domestica
ENSCCAG00000032175	UPF1	100	90.706	ENSMALG00000000144	upf1	100	90.974	Monopterus_albus
ENSCCAG00000032175	UPF1	100	91.297	ENSMALG00000018100	-	100	91.297	Monopterus_albus
ENSCCAG00000032175	UPF1	100	98.665	MGP_CAROLIEiJ_G0031142	Upf1	100	98.665	Mus_caroli
ENSCCAG00000032175	UPF1	100	98.665	ENSMUSG00000058301	Upf1	100	98.665	Mus_musculus
ENSCCAG00000032175	UPF1	100	98.665	MGP_PahariEiJ_G0021607	Upf1	100	98.665	Mus_pahari
ENSCCAG00000032175	UPF1	100	98.665	MGP_SPRETEiJ_G0032260	Upf1	100	98.665	Mus_spretus
ENSCCAG00000032175	UPF1	100	99.643	ENSMPUG00000015516	UPF1	100	99.643	Mustela_putorius_furo
ENSCCAG00000032175	UPF1	99	99.193	ENSMLUG00000012122	UPF1	99	99.193	Myotis_lucifugus
ENSCCAG00000032175	UPF1	100	98.403	ENSNGAG00000024107	Upf1	100	98.403	Nannospalax_galili
ENSCCAG00000032175	UPF1	100	89.948	ENSNBRG00000022069	-	100	93.878	Neolamprologus_brichardi
ENSCCAG00000032175	UPF1	100	89.067	ENSNBRG00000000670	upf1	100	89.413	Neolamprologus_brichardi
ENSCCAG00000032175	UPF1	94	94.202	ENSNLEG00000006062	UPF1	100	94.202	Nomascus_leucogenys
ENSCCAG00000032175	UPF1	83	94.314	ENSMEUG00000014146	-	83	94.314	Notamacropus_eugenii
ENSCCAG00000032175	UPF1	94	90.589	ENSOPRG00000014018	UPF1	100	91.547	Ochotona_princeps
ENSCCAG00000032175	UPF1	100	98.483	ENSODEG00000012426	UPF1	100	98.483	Octodon_degus
ENSCCAG00000032175	UPF1	100	89.982	ENSONIG00000010452	upf1	100	91.166	Oreochromis_niloticus
ENSCCAG00000032175	UPF1	100	92.417	ENSONIG00000012729	-	100	92.328	Oreochromis_niloticus
ENSCCAG00000032175	UPF1	100	97.518	ENSOANG00000004568	UPF1	100	97.518	Ornithorhynchus_anatinus
ENSCCAG00000032175	UPF1	100	92.417	ENSORLG00000008453	upf1	100	92.417	Oryzias_latipes
ENSCCAG00000032175	UPF1	100	92.246	ENSORLG00020014758	upf1	100	92.246	Oryzias_latipes_hni
ENSCCAG00000032175	UPF1	100	92.246	ENSORLG00015010165	upf1	100	92.246	Oryzias_latipes_hsok
ENSCCAG00000032175	UPF1	100	92.507	ENSOMEG00000003665	upf1	100	92.417	Oryzias_melastigma
ENSCCAG00000032175	UPF1	100	99.911	ENSOGAG00000012866	UPF1	100	99.911	Otolemur_garnettii
ENSCCAG00000032175	UPF1	96	97.238	ENSOARG00000010739	UPF1	100	97.238	Ovis_aries
ENSCCAG00000032175	UPF1	95	99.065	ENSPPAG00000043884	UPF1	97	99.065	Pan_paniscus
ENSCCAG00000032175	UPF1	100	98.938	ENSPPRG00000023470	UPF1	100	98.938	Panthera_pardus
ENSCCAG00000032175	UPF1	93	97.596	ENSPTIG00000010159	UPF1	99	97.596	Panthera_tigris_altaica
ENSCCAG00000032175	UPF1	100	100.000	ENSPTRG00000010721	UPF1	100	100.000	Pan_troglodytes
ENSCCAG00000032175	UPF1	100	100.000	ENSPANG00000008847	UPF1	100	100.000	Papio_anubis
ENSCCAG00000032175	UPF1	94	92.170	ENSPKIG00000006069	upf1	99	92.155	Paramormyrops_kingsleyae
ENSCCAG00000032175	UPF1	68	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSCCAG00000032175	UPF1	100	89.235	ENSPMGG00000017327	upf1	100	89.343	Periophthalmus_magnuspinnatus
ENSCCAG00000032175	UPF1	100	98.754	ENSPEMG00000001085	Upf1	100	98.754	Peromyscus_maniculatus_bairdii
ENSCCAG00000032175	UPF1	100	87.344	ENSPMAG00000001206	upf1	100	86.779	Petromyzon_marinus
ENSCCAG00000032175	UPF1	100	98.660	ENSPCIG00000006156	UPF1	100	98.660	Phascolarctos_cinereus
ENSCCAG00000032175	UPF1	100	89.292	ENSPLAG00000018155	-	100	89.204	Poecilia_latipinna
ENSCCAG00000032175	UPF1	100	92.321	ENSPLAG00000016232	-	100	92.232	Poecilia_latipinna
ENSCCAG00000032175	UPF1	100	89.840	ENSPMEG00000011443	-	100	89.750	Poecilia_mexicana
ENSCCAG00000032175	UPF1	100	92.239	ENSPMEG00000016319	-	100	92.150	Poecilia_mexicana
ENSCCAG00000032175	UPF1	100	92.143	ENSPREG00000011247	-	100	92.054	Poecilia_reticulata
ENSCCAG00000032175	UPF1	100	89.735	ENSPREG00000009940	upf1	100	89.735	Poecilia_reticulata
ENSCCAG00000032175	UPF1	100	94.331	ENSPPYG00000009752	UPF1	100	94.331	Pongo_abelii
ENSCCAG00000032175	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCCAG00000032175	UPF1	100	99.288	ENSPCOG00000023813	UPF1	100	99.288	Propithecus_coquereli
ENSCCAG00000032175	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCCAG00000032175	UPF1	100	89.719	ENSPNYG00000003694	upf1	100	90.901	Pundamilia_nyererei
ENSCCAG00000032175	UPF1	100	92.328	ENSPNYG00000016731	-	100	92.239	Pundamilia_nyererei
ENSCCAG00000032175	UPF1	100	92.959	ENSPNAG00000025614	upf1	100	93.405	Pygocentrus_nattereri
ENSCCAG00000032175	UPF1	100	98.665	ENSRNOG00000020134	Upf1	100	98.665	Rattus_norvegicus
ENSCCAG00000032175	UPF1	95	96.916	ENSRBIG00000013894	UPF1	98	99.781	Rhinopithecus_bieti
ENSCCAG00000032175	UPF1	95	99.252	ENSRROG00000040935	UPF1	99	99.252	Rhinopithecus_roxellana
ENSCCAG00000032175	UPF1	76	55.309	YMR080C	NAM7	86	55.962	Saccharomyces_cerevisiae
ENSCCAG00000032175	UPF1	96	98.329	ENSSBOG00000023632	UPF1	98	98.329	Saimiri_boliviensis_boliviensis
ENSCCAG00000032175	UPF1	94	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSCCAG00000032175	UPF1	100	94.826	ENSSFOG00015021095	upf1	99	97.214	Scleropages_formosus
ENSCCAG00000032175	UPF1	100	92.424	ENSSMAG00000021018	-	100	92.424	Scophthalmus_maximus
ENSCCAG00000032175	UPF1	100	88.987	ENSSMAG00000005055	upf1	100	89.789	Scophthalmus_maximus
ENSCCAG00000032175	UPF1	100	92.602	ENSSDUG00000009629	-	100	92.602	Seriola_dumerili
ENSCCAG00000032175	UPF1	100	89.886	ENSSDUG00000013320	upf1	100	90.853	Seriola_dumerili
ENSCCAG00000032175	UPF1	100	90.683	ENSSLDG00000020868	upf1	100	91.143	Seriola_lalandi_dorsalis
ENSCCAG00000032175	UPF1	100	92.602	ENSSLDG00000006878	-	100	92.602	Seriola_lalandi_dorsalis
ENSCCAG00000032175	UPF1	100	97.051	ENSSPUG00000010538	UPF1	100	97.051	Sphenodon_punctatus
ENSCCAG00000032175	UPF1	100	89.196	ENSSPAG00000000003	upf1	100	89.136	Stegastes_partitus
ENSCCAG00000032175	UPF1	100	92.768	ENSSPAG00000011521	-	100	92.679	Stegastes_partitus
ENSCCAG00000032175	UPF1	100	99.106	ENSSSCG00000039301	UPF1	100	99.106	Sus_scrofa
ENSCCAG00000032175	UPF1	83	89.787	ENSTGUG00000001057	UPF1	100	95.421	Taeniopygia_guttata
ENSCCAG00000032175	UPF1	100	91.429	ENSTRUG00000005131	-	100	91.429	Takifugu_rubripes
ENSCCAG00000032175	UPF1	100	90.438	ENSTRUG00000000150	upf1	100	90.438	Takifugu_rubripes
ENSCCAG00000032175	UPF1	100	95.353	ENSTTRG00000011544	UPF1	100	94.727	Tursiops_truncatus
ENSCCAG00000032175	UPF1	100	99.553	ENSUAMG00000007093	UPF1	100	99.553	Ursus_americanus
ENSCCAG00000032175	UPF1	95	98.690	ENSUMAG00000006652	UPF1	99	99.896	Ursus_maritimus
ENSCCAG00000032175	UPF1	100	99.643	ENSVVUG00000007797	UPF1	100	99.643	Vulpes_vulpes
ENSCCAG00000032175	UPF1	100	82.291	ENSXETG00000013602	upf1	100	82.203	Xenopus_tropicalis
ENSCCAG00000032175	UPF1	97	89.658	ENSXCOG00000015275	-	96	89.649	Xiphophorus_couchianus
ENSCCAG00000032175	UPF1	92	94.859	ENSXCOG00000005764	-	100	94.859	Xiphophorus_couchianus
ENSCCAG00000032175	UPF1	100	89.911	ENSXMAG00000001703	-	100	89.821	Xiphophorus_maculatus
ENSCCAG00000032175	UPF1	100	92.061	ENSXMAG00000002540	-	100	91.971	Xiphophorus_maculatus