EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000033498 (Gene tree)
Gene ID: 108317592
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 92986 bases
Position: chrKV389630.1:3296361-3389346
Accession: 108317592
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000030883	RRM_1	PF00076.22	3.7e-32	1	2
ENSCCAP00000030883	RRM_1	PF00076.22	3.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000048632	PSPC1-201	5371	XM_017548220	ENSCCAP00000030883	521 (aa)	XP_017403709	A0A2K5RRU7

Gene Model

Click here to download ENSCCAG00000033498's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000033498's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000033498	PSPC1	92	57.700	ENSCCAG00000029361	-	54	66.408

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000033498	PSPC1	100	98.853	ENSG00000121390	PSPC1	100	98.853	Homo_sapiens
ENSCCAG00000033498	PSPC1	88	71.069	ENSAPOG00000015946	pspc1	87	69.392	Acanthochromis_polyacanthus
ENSCCAG00000033498	PSPC1	100	98.656	ENSAMEG00000017420	PSPC1	100	98.656	Ailuropoda_melanoleuca
ENSCCAG00000033498	PSPC1	99	57.963	ENSACIG00000018695	pspc1	100	55.493	Amphilophus_citrinellus
ENSCCAG00000033498	PSPC1	88	70.146	ENSAOCG00000005279	pspc1	87	68.750	Amphiprion_ocellaris
ENSCCAG00000033498	PSPC1	88	71.277	ENSAPEG00000015927	pspc1	87	68.973	Amphiprion_percula
ENSCCAG00000033498	PSPC1	97	55.916	ENSATEG00000004878	pspc1	86	58.761	Anabas_testudineus
ENSCCAG00000033498	PSPC1	77	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSCCAG00000033498	PSPC1	89	60.730	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSCCAG00000033498	PSPC1	99	83.117	ENSACAG00000002093	PSPC1	99	84.762	Anolis_carolinensis
ENSCCAG00000033498	PSPC1	90	52.500	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSCCAG00000033498	PSPC1	100	99.616	ENSANAG00000000059	PSPC1	100	99.616	Aotus_nancymaae
ENSCCAG00000033498	PSPC1	99	57.090	ENSACLG00000027220	pspc1	100	54.059	Astatotilapia_calliptera
ENSCCAG00000033498	PSPC1	99	63.553	ENSAMXG00000036881	pspc1	83	71.460	Astyanax_mexicanus
ENSCCAG00000033498	PSPC1	100	95.969	ENSBTAG00000003934	PSPC1	100	95.969	Bos_taurus
ENSCCAG00000033498	PSPC1	100	99.616	ENSCJAG00000004554	PSPC1	100	99.616	Callithrix_jacchus
ENSCCAG00000033498	PSPC1	100	98.848	ENSCAFG00020002009	PSPC1	100	98.848	Canis_lupus_dingo
ENSCCAG00000033498	PSPC1	100	95.969	ENSCHIG00000016708	PSPC1	100	95.969	Capra_hircus
ENSCCAG00000033498	PSPC1	77	91.791	ENSTSYG00000032882	PSPC1	93	85.511	Carlito_syrichta
ENSCCAG00000033498	PSPC1	100	97.313	ENSCPOG00000000395	PSPC1	100	97.313	Cavia_porcellus
ENSCCAG00000033498	PSPC1	100	98.470	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSCCAG00000033498	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSCCAG00000033498	PSPC1	100	91.396	ENSCHOG00000008913	PSPC1	100	91.205	Choloepus_hoffmanni
ENSCCAG00000033498	PSPC1	99	86.502	ENSCPBG00000020859	PSPC1	99	87.645	Chrysemys_picta_bellii
ENSCCAG00000033498	PSPC1	59	58.766	ENSCSAVG00000003533	-	57	58.553	Ciona_savignyi
ENSCCAG00000033498	PSPC1	78	85.926	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSCCAG00000033498	PSPC1	100	97.514	ENSCGRG00001018368	Pspc1	100	97.514	Cricetulus_griseus_chok1gshd
ENSCCAG00000033498	PSPC1	100	97.514	ENSCGRG00000011724	Pspc1	100	97.514	Cricetulus_griseus_crigri
ENSCCAG00000033498	PSPC1	87	66.739	ENSCVAG00000007679	-	92	62.173	Cyprinodon_variegatus
ENSCCAG00000033498	PSPC1	99	66.292	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSCCAG00000033498	PSPC1	100	96.750	ENSDNOG00000011078	PSPC1	100	96.750	Dasypus_novemcinctus
ENSCCAG00000033498	PSPC1	100	94.455	ENSDORG00000016050	Pspc1	100	93.881	Dipodomys_ordii
ENSCCAG00000033498	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSCCAG00000033498	PSPC1	62	45.087	ENSEBUG00000010133	pspc1	82	47.302	Eptatretus_burgeri
ENSCCAG00000033498	PSPC1	88	59.091	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSCCAG00000033498	PSPC1	100	97.889	ENSEASG00005000119	PSPC1	100	97.889	Equus_asinus_asinus
ENSCCAG00000033498	PSPC1	100	97.889	ENSECAG00000017286	PSPC1	100	97.889	Equus_caballus
ENSCCAG00000033498	PSPC1	88	82.812	ENSEEUG00000011288	-	100	65.451	Erinaceus_europaeus
ENSCCAG00000033498	PSPC1	99	65.683	ENSELUG00000003746	pspc1	94	72.564	Esox_lucius
ENSCCAG00000033498	PSPC1	100	98.848	ENSFCAG00000027841	PSPC1	100	98.848	Felis_catus
ENSCCAG00000033498	PSPC1	89	94.433	ENSFALG00000008750	PSPC1	99	87.572	Ficedula_albicollis
ENSCCAG00000033498	PSPC1	100	95.202	ENSFDAG00000002617	PSPC1	100	95.202	Fukomys_damarensis
ENSCCAG00000033498	PSPC1	88	66.953	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSCCAG00000033498	PSPC1	99	87.287	ENSGALG00000017142	PSPC1	99	88.439	Gallus_gallus
ENSCCAG00000033498	PSPC1	62	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSCCAG00000033498	PSPC1	88	65.948	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSCCAG00000033498	PSPC1	92	59.213	ENSGAGG00000017325	-	58	66.841	Gopherus_agassizii
ENSCCAG00000033498	PSPC1	99	87.885	ENSGAGG00000019164	PSPC1	99	87.645	Gopherus_agassizii
ENSCCAG00000033498	PSPC1	100	98.662	ENSGGOG00000003414	PSPC1	100	98.662	Gorilla_gorilla
ENSCCAG00000033498	PSPC1	99	64.325	ENSHBUG00000001139	pspc1	100	63.586	Haplochromis_burtoni
ENSCCAG00000033498	PSPC1	100	97.313	ENSHGLG00000018811	PSPC1	100	97.313	Heterocephalus_glaber_female
ENSCCAG00000033498	PSPC1	67	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSCCAG00000033498	PSPC1	79	67.067	ENSHCOG00000013251	pspc1	92	65.942	Hippocampus_comes
ENSCCAG00000033498	PSPC1	99	67.542	ENSIPUG00000013192	pspc1	100	67.355	Ictalurus_punctatus
ENSCCAG00000033498	PSPC1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSCCAG00000033498	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSCCAG00000033498	PSPC1	88	55.724	ENSKMAG00000013525	-	96	50.860	Kryptolebias_marmoratus
ENSCCAG00000033498	PSPC1	92	66.004	ENSLBEG00000004474	pspc1	78	70.698	Labrus_bergylta
ENSCCAG00000033498	PSPC1	99	77.905	ENSLACG00000010762	PSPC1	99	77.213	Latimeria_chalumnae
ENSCCAG00000033498	PSPC1	99	77.885	ENSLOCG00000010832	pspc1	99	77.055	Lepisosteus_oculatus
ENSCCAG00000033498	PSPC1	100	97.132	ENSLAFG00000010968	PSPC1	100	97.132	Loxodonta_africana
ENSCCAG00000033498	PSPC1	100	98.470	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSCCAG00000033498	PSPC1	100	98.470	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSCCAG00000033498	PSPC1	100	98.470	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSCCAG00000033498	PSPC1	100	99.499	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSCCAG00000033498	PSPC1	88	67.835	ENSMAMG00000004333	pspc1	86	67.158	Mastacembelus_armatus
ENSCCAG00000033498	PSPC1	99	57.090	ENSMZEG00005005726	pspc1	100	54.059	Maylandia_zebra
ENSCCAG00000033498	PSPC1	78	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSCCAG00000033498	PSPC1	88	91.991	ENSMAUG00000021067	Pspc1	99	91.991	Mesocricetus_auratus
ENSCCAG00000033498	PSPC1	100	97.505	ENSMICG00000013970	PSPC1	100	97.505	Microcebus_murinus
ENSCCAG00000033498	PSPC1	100	97.514	ENSMOCG00000006060	Pspc1	100	97.514	Microtus_ochrogaster
ENSCCAG00000033498	PSPC1	93	43.411	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSCCAG00000033498	PSPC1	93	96.495	ENSMODG00000008029	PSPC1	78	96.495	Monodelphis_domestica
ENSCCAG00000033498	PSPC1	92	67.551	ENSMALG00000008914	pspc1	92	65.447	Monopterus_albus
ENSCCAG00000033498	PSPC1	100	97.519	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.519	Mus_caroli
ENSCCAG00000033498	PSPC1	100	97.710	ENSMUSG00000021938	Pspc1	100	97.710	Mus_musculus
ENSCCAG00000033498	PSPC1	100	97.519	MGP_PahariEiJ_G0030359	Pspc1	100	97.519	Mus_pahari
ENSCCAG00000033498	PSPC1	100	97.519	MGP_SPRETEiJ_G0020232	Pspc1	100	97.519	Mus_spretus
ENSCCAG00000033498	PSPC1	100	98.464	ENSMPUG00000013347	PSPC1	100	98.464	Mustela_putorius_furo
ENSCCAG00000033498	PSPC1	100	96.565	ENSMLUG00000017663	PSPC1	100	96.565	Myotis_lucifugus
ENSCCAG00000033498	PSPC1	100	97.706	ENSNGAG00000011271	Pspc1	100	97.706	Nannospalax_galili
ENSCCAG00000033498	PSPC1	74	65.394	ENSNBRG00000014059	pspc1	92	62.217	Neolamprologus_brichardi
ENSCCAG00000033498	PSPC1	100	98.662	ENSNLEG00000001294	PSPC1	100	98.662	Nomascus_leucogenys
ENSCCAG00000033498	PSPC1	84	94.531	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSCCAG00000033498	PSPC1	100	86.372	ENSODEG00000007817	-	100	81.404	Octodon_degus
ENSCCAG00000033498	PSPC1	100	85.249	ENSODEG00000019012	-	100	85.958	Octodon_degus
ENSCCAG00000033498	PSPC1	99	64.325	ENSONIG00000012010	pspc1	99	62.888	Oreochromis_niloticus
ENSCCAG00000033498	PSPC1	99	66.284	ENSOANG00000011381	-	99	64.054	Ornithorhynchus_anatinus
ENSCCAG00000033498	PSPC1	77	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSCCAG00000033498	PSPC1	100	98.088	ENSOCUG00000006153	PSPC1	100	98.088	Oryctolagus_cuniculus
ENSCCAG00000033498	PSPC1	88	70.213	ENSORLG00000004232	-	91	62.648	Oryzias_latipes
ENSCCAG00000033498	PSPC1	88	69.787	ENSORLG00020000578	PSPC1	91	63.800	Oryzias_latipes_hni
ENSCCAG00000033498	PSPC1	88	70.638	ENSORLG00015017480	pspc1	86	66.739	Oryzias_latipes_hsok
ENSCCAG00000033498	PSPC1	100	98.853	ENSOGAG00000012643	PSPC1	100	98.853	Otolemur_garnettii
ENSCCAG00000033498	PSPC1	100	91.396	ENSOARG00000014163	PSPC1	100	91.396	Ovis_aries
ENSCCAG00000033498	PSPC1	89	92.903	ENSPPAG00000009836	PSPC1	96	97.353	Pan_paniscus
ENSCCAG00000033498	PSPC1	100	98.848	ENSPPRG00000008833	PSPC1	100	98.848	Panthera_pardus
ENSCCAG00000033498	PSPC1	100	83.301	ENSPTIG00000016917	PSPC1	100	83.301	Panthera_tigris_altaica
ENSCCAG00000033498	PSPC1	98	97.276	ENSPTRG00000005677	PSPC1	99	98.765	Pan_troglodytes
ENSCCAG00000033498	PSPC1	100	98.662	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSCCAG00000033498	PSPC1	89	75.000	ENSPKIG00000003578	pspc1	88	74.414	Paramormyrops_kingsleyae
ENSCCAG00000033498	PSPC1	99	86.441	ENSPSIG00000005168	PSPC1	99	87.091	Pelodiscus_sinensis
ENSCCAG00000033498	PSPC1	59	70.476	ENSPMGG00000015135	pspc1	86	70.382	Periophthalmus_magnuspinnatus
ENSCCAG00000033498	PSPC1	100	97.897	ENSPEMG00000015214	Pspc1	100	97.897	Peromyscus_maniculatus_bairdii
ENSCCAG00000033498	PSPC1	54	44.792	ENSPMAG00000004618	pspc1	88	44.792	Petromyzon_marinus
ENSCCAG00000033498	PSPC1	99	96.935	ENSPCIG00000017680	PSPC1	100	96.935	Phascolarctos_cinereus
ENSCCAG00000033498	PSPC1	95	66.206	ENSPFOG00000003362	pspc1	88	68.076	Poecilia_formosa
ENSCCAG00000033498	PSPC1	95	66.206	ENSPLAG00000011540	pspc1	87	67.653	Poecilia_latipinna
ENSCCAG00000033498	PSPC1	70	64.595	ENSPLAG00000004407	-	53	60.209	Poecilia_latipinna
ENSCCAG00000033498	PSPC1	95	65.810	ENSPMEG00000008322	pspc1	87	67.230	Poecilia_mexicana
ENSCCAG00000033498	PSPC1	69	65.110	ENSPMEG00000001025	-	52	60.638	Poecilia_mexicana
ENSCCAG00000033498	PSPC1	95	65.810	ENSPREG00000007786	pspc1	87	67.653	Poecilia_reticulata
ENSCCAG00000033498	PSPC1	100	98.088	ENSPPYG00000005186	PSPC1	100	98.088	Pongo_abelii
ENSCCAG00000033498	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSCCAG00000033498	PSPC1	100	94.073	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSCCAG00000033498	PSPC1	100	94.626	ENSPVAG00000005036	PSPC1	100	95.010	Pteropus_vampyrus
ENSCCAG00000033498	PSPC1	99	57.274	ENSPNYG00000008893	pspc1	100	54.244	Pundamilia_nyererei
ENSCCAG00000033498	PSPC1	99	68.037	ENSPNAG00000016511	pspc1	100	67.850	Pygocentrus_nattereri
ENSCCAG00000033498	PSPC1	100	97.706	ENSRNOG00000020782	Pspc1	100	97.706	Rattus_norvegicus
ENSCCAG00000033498	PSPC1	93	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSCCAG00000033498	PSPC1	100	98.662	ENSRROG00000036334	PSPC1	100	98.662	Rhinopithecus_roxellana
ENSCCAG00000033498	PSPC1	79	88.862	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSCCAG00000033498	PSPC1	100	90.857	ENSSHAG00000004696	PSPC1	100	91.238	Sarcophilus_harrisii
ENSCCAG00000033498	PSPC1	82	79.391	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSCCAG00000033498	PSPC1	93	66.200	ENSSMAG00000001761	pspc1	86	74.928	Scophthalmus_maximus
ENSCCAG00000033498	PSPC1	88	69.371	ENSSDUG00000010651	pspc1	80	71.903	Seriola_dumerili
ENSCCAG00000033498	PSPC1	88	64.935	ENSSLDG00000004284	pspc1	86	60.220	Seriola_lalandi_dorsalis
ENSCCAG00000033498	PSPC1	100	90.019	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSCCAG00000033498	PSPC1	99	75.283	ENSSPUG00000008550	PSPC1	99	76.008	Sphenodon_punctatus
ENSCCAG00000033498	PSPC1	89	54.025	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSCCAG00000033498	PSPC1	91	67.800	ENSSPAG00000001921	pspc1	81	70.917	Stegastes_partitus
ENSCCAG00000033498	PSPC1	100	97.126	ENSSSCG00000009569	PSPC1	100	97.126	Sus_scrofa
ENSCCAG00000033498	PSPC1	89	94.433	ENSTGUG00000011295	PSPC1	100	94.433	Taeniopygia_guttata
ENSCCAG00000033498	PSPC1	88	63.270	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSCCAG00000033498	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	88	64.920	Tetraodon_nigroviridis
ENSCCAG00000033498	PSPC1	100	77.735	ENSTBEG00000002361	PSPC1	100	76.008	Tupaia_belangeri
ENSCCAG00000033498	PSPC1	100	97.318	ENSTTRG00000003343	PSPC1	100	97.318	Tursiops_truncatus
ENSCCAG00000033498	PSPC1	67	98.854	ENSUAMG00000012309	PSPC1	100	98.854	Ursus_americanus
ENSCCAG00000033498	PSPC1	93	98.357	ENSUMAG00000013993	PSPC1	100	98.357	Ursus_maritimus
ENSCCAG00000033498	PSPC1	77	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSCCAG00000033498	PSPC1	100	98.848	ENSVVUG00000006414	PSPC1	100	99.219	Vulpes_vulpes
ENSCCAG00000033498	PSPC1	66	73.239	ENSXCOG00000017438	pspc1	84	73.239	Xiphophorus_couchianus
ENSCCAG00000033498	PSPC1	66	73.521	ENSXMAG00000007929	pspc1	84	73.521	Xiphophorus_maculatus