EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000034800 (Gene tree)
Gene ID: 108300827
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 126331 bases
Position: chrKV389456.1:3594834-3721164
Accession: 108300827
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000033688	XRN_N	PF03159.18	2.5e-96	1	1
ENSCCAP00000033680	XRN_N	PF03159.18	5.3e-96	1	1
ENSCCAP00000033672	XRN_N	PF03159.18	5.4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000051443	XRN1-201	10148	XM_017523754	ENSCCAP00000033672	1707 (aa)	XP_017379243	A0A2K5RZV5
ENSCCAT00000051460	XRN1-203	2910	-	ENSCCAP00000033688	969 (aa)	-	A0A2K5RZW3
ENSCCAT00000051451	XRN1-202	10104	XM_017523757	ENSCCAP00000033680	1694 (aa)	XP_017379246	A0A2K5RZY9

Gene Model

Click here to download ENSCCAG00000034800's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000034800's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000034800	XRN1	99	98.415	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSCCAG00000034800	XRN1	99	77.778	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSCCAG00000034800	XRN1	99	97.147	ENSAMEG00000012538	XRN1	100	91.758	Ailuropoda_melanoleuca
ENSCCAG00000034800	XRN1	99	77.971	ENSACIG00000001057	xrn1	99	72.520	Amphilophus_citrinellus
ENSCCAG00000034800	XRN1	99	77.901	ENSAOCG00000014097	xrn1	95	69.478	Amphiprion_ocellaris
ENSCCAG00000034800	XRN1	99	77.901	ENSAPEG00000006620	xrn1	91	72.414	Amphiprion_percula
ENSCCAG00000034800	XRN1	99	76.115	ENSATEG00000009752	xrn1	99	71.429	Anabas_testudineus
ENSCCAG00000034800	XRN1	96	89.238	ENSAPLG00000004905	XRN1	100	76.074	Anas_platyrhynchos
ENSCCAG00000034800	XRN1	99	86.032	ENSACAG00000004985	XRN1	100	72.691	Anolis_carolinensis
ENSCCAG00000034800	XRN1	100	98.770	ENSANAG00000029013	XRN1	100	98.770	Aotus_nancymaae
ENSCCAG00000034800	XRN1	99	77.179	ENSACLG00000004806	xrn1	99	60.351	Astatotilapia_calliptera
ENSCCAG00000034800	XRN1	99	74.286	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSCCAG00000034800	XRN1	99	96.108	ENSBTAG00000011524	XRN1	100	92.326	Bos_taurus
ENSCCAG00000034800	XRN1	93	52.632	WBGene00012730	xrn-1	83	38.877	Caenorhabditis_elegans
ENSCCAG00000034800	XRN1	100	98.760	ENSCJAG00000001872	XRN1	100	98.760	Callithrix_jacchus
ENSCCAG00000034800	XRN1	99	97.464	ENSCAFG00000007783	XRN1	100	93.497	Canis_familiaris
ENSCCAG00000034800	XRN1	99	97.464	ENSCAFG00020009120	XRN1	99	95.263	Canis_lupus_dingo
ENSCCAG00000034800	XRN1	99	96.108	ENSCHIG00000019192	XRN1	99	90.341	Capra_hircus
ENSCCAG00000034800	XRN1	99	97.306	ENSTSYG00000002705	XRN1	100	93.982	Carlito_syrichta
ENSCCAG00000034800	XRN1	97	73.968	ENSCAPG00000004604	-	99	76.949	Cavia_aperea
ENSCCAG00000034800	XRN1	99	99.208	ENSCATG00000041794	XRN1	100	97.462	Cercocebus_atys
ENSCCAG00000034800	XRN1	100	96.078	ENSCLAG00000001451	XRN1	100	96.078	Chinchilla_lanigera
ENSCCAG00000034800	XRN1	99	99.049	ENSCSAG00000011265	XRN1	100	97.305	Chlorocebus_sabaeus
ENSCCAG00000034800	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSCCAG00000034800	XRN1	84	61.368	ENSCSAVG00000008584	-	98	44.496	Ciona_savignyi
ENSCCAG00000034800	XRN1	100	99.278	ENSCANG00000037495	XRN1	100	99.278	Colobus_angolensis_palliatus
ENSCCAG00000034800	XRN1	100	95.975	ENSCGRG00001019411	Xrn1	100	95.975	Cricetulus_griseus_chok1gshd
ENSCCAG00000034800	XRN1	100	95.975	ENSCGRG00000012464	Xrn1	100	95.975	Cricetulus_griseus_crigri
ENSCCAG00000034800	XRN1	99	77.619	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCCAG00000034800	XRN1	99	76.312	ENSCVAG00000013089	xrn1	99	72.070	Cyprinodon_variegatus
ENSCCAG00000034800	XRN1	99	79.239	ENSDARG00000091652	xrn1	98	80.169	Danio_rerio
ENSCCAG00000034800	XRN1	99	96.343	ENSDORG00000013833	Xrn1	100	87.153	Dipodomys_ordii
ENSCCAG00000034800	XRN1	94	54.958	FBgn0020261	pcm	76	39.923	Drosophila_melanogaster
ENSCCAG00000034800	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCCAG00000034800	XRN1	100	96.698	ENSEASG00005002687	XRN1	100	96.698	Equus_asinus_asinus
ENSCCAG00000034800	XRN1	99	96.672	ENSECAG00000008301	XRN1	100	92.853	Equus_caballus
ENSCCAG00000034800	XRN1	84	97.548	ENSEEUG00000011323	XRN1	92	83.382	Erinaceus_europaeus
ENSCCAG00000034800	XRN1	99	78.797	ENSELUG00000000169	xrn1	100	61.770	Esox_lucius
ENSCCAG00000034800	XRN1	99	95.210	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSCCAG00000034800	XRN1	99	88.712	ENSFALG00000007021	XRN1	100	74.396	Ficedula_albicollis
ENSCCAG00000034800	XRN1	100	95.872	ENSFDAG00000020494	XRN1	100	95.872	Fukomys_damarensis
ENSCCAG00000034800	XRN1	50	70.478	ENSFHEG00000017356	-	98	70.062	Fundulus_heteroclitus
ENSCCAG00000034800	XRN1	99	76.789	ENSGMOG00000006396	xrn1	83	68.368	Gadus_morhua
ENSCCAG00000034800	XRN1	99	89.189	ENSGALG00000002706	XRN1	100	74.902	Gallus_gallus
ENSCCAG00000034800	XRN1	99	76.667	ENSGACG00000014328	xrn1	100	60.297	Gasterosteus_aculeatus
ENSCCAG00000034800	XRN1	99	87.937	ENSGAGG00000017535	XRN1	99	78.059	Gopherus_agassizii
ENSCCAG00000034800	XRN1	99	98.257	ENSGGOG00000008047	XRN1	100	96.930	Gorilla_gorilla
ENSCCAG00000034800	XRN1	99	75.436	ENSHBUG00000005908	xrn1	98	72.895	Haplochromis_burtoni
ENSCCAG00000034800	XRN1	99	97.147	ENSHGLG00000014476	XRN1	100	96.591	Heterocephalus_glaber_female
ENSCCAG00000034800	XRN1	99	97.147	ENSHGLG00100015130	XRN1	100	96.591	Heterocephalus_glaber_male
ENSCCAG00000034800	XRN1	99	77.031	ENSHCOG00000014062	xrn1	99	70.000	Hippocampus_comes
ENSCCAG00000034800	XRN1	99	79.206	ENSIPUG00000015229	xrn1	99	62.328	Ictalurus_punctatus
ENSCCAG00000034800	XRN1	99	97.940	ENSSTOG00000013552	XRN1	99	97.940	Ictidomys_tridecemlineatus
ENSCCAG00000034800	XRN1	97	94.915	ENSJJAG00000010863	Xrn1	100	94.915	Jaculus_jaculus
ENSCCAG00000034800	XRN1	99	77.990	ENSKMAG00000021356	xrn1	94	76.160	Kryptolebias_marmoratus
ENSCCAG00000034800	XRN1	99	77.266	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCCAG00000034800	XRN1	99	84.127	ENSLACG00000009020	XRN1	100	69.205	Latimeria_chalumnae
ENSCCAG00000034800	XRN1	99	82.306	ENSLOCG00000007944	xrn1	100	65.940	Lepisosteus_oculatus
ENSCCAG00000034800	XRN1	99	97.297	ENSLAFG00000015426	XRN1	100	96.352	Loxodonta_africana
ENSCCAG00000034800	XRN1	99	99.049	ENSMFAG00000032599	XRN1	100	97.462	Macaca_fascicularis
ENSCCAG00000034800	XRN1	99	99.208	ENSMMUG00000014038	XRN1	100	97.521	Macaca_mulatta
ENSCCAG00000034800	XRN1	99	98.732	ENSMNEG00000034217	XRN1	100	97.344	Macaca_nemestrina
ENSCCAG00000034800	XRN1	99	78.357	ENSMAMG00000013219	xrn1	94	77.320	Mastacembelus_armatus
ENSCCAG00000034800	XRN1	99	77.093	ENSMZEG00005015099	xrn1	99	60.238	Maylandia_zebra
ENSCCAG00000034800	XRN1	97	84.983	ENSMGAG00000006333	XRN1	100	74.884	Meleagris_gallopavo
ENSCCAG00000034800	XRN1	99	96.989	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCCAG00000034800	XRN1	100	94.634	ENSMOCG00000008665	Xrn1	100	94.634	Microtus_ochrogaster
ENSCCAG00000034800	XRN1	54	68.635	ENSMMOG00000020896	-	96	68.635	Mola_mola
ENSCCAG00000034800	XRN1	99	89.650	ENSMODG00000021236	XRN1	100	82.264	Monodelphis_domestica
ENSCCAG00000034800	XRN1	99	71.111	ENSMALG00000004098	xrn1	100	56.872	Monopterus_albus
ENSCCAG00000034800	XRN1	99	95.248	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCCAG00000034800	XRN1	99	95.880	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCCAG00000034800	XRN1	99	95.880	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCCAG00000034800	XRN1	99	95.880	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCCAG00000034800	XRN1	99	97.464	ENSMPUG00000012040	XRN1	100	93.732	Mustela_putorius_furo
ENSCCAG00000034800	XRN1	99	96.820	ENSMLUG00000016885	XRN1	100	89.319	Myotis_lucifugus
ENSCCAG00000034800	XRN1	99	93.154	ENSNGAG00000023964	Xrn1	100	93.154	Nannospalax_galili
ENSCCAG00000034800	XRN1	99	99.208	ENSNLEG00000004726	XRN1	100	97.285	Nomascus_leucogenys
ENSCCAG00000034800	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSCCAG00000034800	XRN1	74	91.304	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSCCAG00000034800	XRN1	99	78.006	ENSONIG00000016673	xrn1	99	64.446	Oreochromis_niloticus
ENSCCAG00000034800	XRN1	85	88.508	ENSOANG00000006735	XRN1	100	78.269	Ornithorhynchus_anatinus
ENSCCAG00000034800	XRN1	99	96.830	ENSOCUG00000001861	XRN1	100	90.430	Oryctolagus_cuniculus
ENSCCAG00000034800	XRN1	99	78.213	ENSORLG00000013005	xrn1	100	60.608	Oryzias_latipes
ENSCCAG00000034800	XRN1	99	79.206	ENSORLG00020005559	xrn1	100	61.543	Oryzias_latipes_hni
ENSCCAG00000034800	XRN1	99	78.730	ENSORLG00015022523	xrn1	100	61.246	Oryzias_latipes_hsok
ENSCCAG00000034800	XRN1	99	78.219	ENSOMEG00000015397	xrn1	100	73.024	Oryzias_melastigma
ENSCCAG00000034800	XRN1	100	91.452	ENSOGAG00000000170	XRN1	100	91.569	Otolemur_garnettii
ENSCCAG00000034800	XRN1	99	96.197	ENSOARG00000006343	XRN1	99	92.845	Ovis_aries
ENSCCAG00000034800	XRN1	99	98.098	ENSPPAG00000010180	XRN1	100	96.812	Pan_paniscus
ENSCCAG00000034800	XRN1	99	97.006	ENSPPRG00000007125	XRN1	100	93.746	Panthera_pardus
ENSCCAG00000034800	XRN1	99	97.006	ENSPTIG00000021081	XRN1	100	93.805	Panthera_tigris_altaica
ENSCCAG00000034800	XRN1	99	98.098	ENSPTRG00000015482	XRN1	100	96.694	Pan_troglodytes
ENSCCAG00000034800	XRN1	99	99.208	ENSPANG00000010638	XRN1	100	97.403	Papio_anubis
ENSCCAG00000034800	XRN1	99	88.114	ENSPSIG00000018050	XRN1	100	76.985	Pelodiscus_sinensis
ENSCCAG00000034800	XRN1	99	74.277	ENSPMGG00000002648	xrn1	98	78.807	Periophthalmus_magnuspinnatus
ENSCCAG00000034800	XRN1	100	95.459	ENSPEMG00000020610	Xrn1	100	95.459	Peromyscus_maniculatus_bairdii
ENSCCAG00000034800	XRN1	93	57.450	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSCCAG00000034800	XRN1	99	89.666	ENSPCIG00000028735	XRN1	100	89.050	Phascolarctos_cinereus
ENSCCAG00000034800	XRN1	99	77.480	ENSPFOG00000013932	xrn1	99	65.000	Poecilia_formosa
ENSCCAG00000034800	XRN1	99	77.848	ENSPLAG00000021653	xrn1	99	64.277	Poecilia_latipinna
ENSCCAG00000034800	XRN1	99	77.813	ENSPMEG00000003076	xrn1	95	64.809	Poecilia_mexicana
ENSCCAG00000034800	XRN1	99	77.287	ENSPREG00000021147	xrn1	100	61.257	Poecilia_reticulata
ENSCCAG00000034800	XRN1	99	98.732	ENSPPYG00000014172	XRN1	100	96.837	Pongo_abelii
ENSCCAG00000034800	XRN1	92	95.238	ENSPCAG00000005638	XRN1	99	82.219	Procavia_capensis
ENSCCAG00000034800	XRN1	100	97.626	ENSPCOG00000013089	XRN1	99	97.626	Propithecus_coquereli
ENSCCAG00000034800	XRN1	99	95.482	ENSPVAG00000016265	XRN1	96	92.374	Pteropus_vampyrus
ENSCCAG00000034800	XRN1	99	77.338	ENSPNYG00000010570	xrn1	99	60.935	Pundamilia_nyererei
ENSCCAG00000034800	XRN1	99	76.145	ENSPNAG00000023531	xrn1	99	60.461	Pygocentrus_nattereri
ENSCCAG00000034800	XRN1	99	95.563	ENSRNOG00000042951	Xrn1	100	87.406	Rattus_norvegicus
ENSCCAG00000034800	XRN1	99	98.574	ENSRBIG00000041227	XRN1	100	96.661	Rhinopithecus_bieti
ENSCCAG00000034800	XRN1	83	54.496	YGL173C	XRN1	81	34.513	Saccharomyces_cerevisiae
ENSCCAG00000034800	XRN1	100	98.760	ENSSBOG00000029561	XRN1	100	98.760	Saimiri_boliviensis_boliviensis
ENSCCAG00000034800	XRN1	96	89.604	ENSSHAG00000016207	XRN1	100	81.528	Sarcophilus_harrisii
ENSCCAG00000034800	XRN1	99	78.696	ENSSFOG00015024211	xrn1	100	61.419	Scleropages_formosus
ENSCCAG00000034800	XRN1	99	79.556	ENSSMAG00000016534	xrn1	100	65.279	Scophthalmus_maximus
ENSCCAG00000034800	XRN1	99	79.048	ENSSDUG00000010306	xrn1	97	72.101	Seriola_dumerili
ENSCCAG00000034800	XRN1	99	79.048	ENSSLDG00000021543	xrn1	100	70.365	Seriola_lalandi_dorsalis
ENSCCAG00000034800	XRN1	89	92.881	ENSSARG00000007741	-	83	85.331	Sorex_araneus
ENSCCAG00000034800	XRN1	50	76.268	ENSSPAG00000009856	-	96	76.673	Stegastes_partitus
ENSCCAG00000034800	XRN1	99	88.712	ENSTGUG00000008498	XRN1	100	76.553	Taeniopygia_guttata
ENSCCAG00000034800	XRN1	99	77.316	ENSTRUG00000004895	xrn1	96	75.574	Takifugu_rubripes
ENSCCAG00000034800	XRN1	97	76.645	ENSTNIG00000017615	xrn1	100	58.854	Tetraodon_nigroviridis
ENSCCAG00000034800	XRN1	99	87.879	ENSTBEG00000003256	XRN1	89	87.879	Tupaia_belangeri
ENSCCAG00000034800	XRN1	99	96.988	ENSTTRG00000012914	XRN1	100	88.987	Tursiops_truncatus
ENSCCAG00000034800	XRN1	99	97.006	ENSUAMG00000001608	XRN1	99	94.105	Ursus_americanus
ENSCCAG00000034800	XRN1	99	97.464	ENSUMAG00000013625	XRN1	100	94.672	Ursus_maritimus
ENSCCAG00000034800	XRN1	99	97.306	ENSVPAG00000004690	XRN1	100	90.803	Vicugna_pacos
ENSCCAG00000034800	XRN1	99	97.521	ENSVVUG00000024461	XRN1	99	97.521	Vulpes_vulpes
ENSCCAG00000034800	XRN1	99	82.780	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSCCAG00000034800	XRN1	99	77.583	ENSXCOG00000007917	xrn1	100	60.622	Xiphophorus_couchianus
ENSCCAG00000034800	XRN1	99	76.630	ENSXMAG00000018320	xrn1	98	72.127	Xiphophorus_maculatus