EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000035801 (Gene tree)
Gene ID: 108313298
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 240039 bases
Position: chrKV389562.1:800925-1040963
Accession: 108313298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000035786	EST1	PF10374.9	3e-15	1	1
ENSCCAP00000035786	EST1_DNA_bind	PF10373.9	2.6e-60	1	1
ENSCCAP00000035786	PIN_4	PF13638.6	1.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000053566	SMG6-201	4516	XM_017541629	ENSCCAP00000035786	1419 (aa)	XP_017397118	A0A2K5S5Y0

Gene Model

Click here to download ENSCCAG00000035801's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000035801's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000035801	SMG6	100	95.560	ENSG00000070366	SMG6	100	98.551	Homo_sapiens
ENSCCAG00000035801	SMG6	71	59.598	ENSAPOG00000019448	smg6	74	54.836	Acanthochromis_polyacanthus
ENSCCAG00000035801	SMG6	100	93.305	ENSAMEG00000007632	SMG6	100	93.305	Ailuropoda_melanoleuca
ENSCCAG00000035801	SMG6	71	59.487	ENSAOCG00000002630	smg6	75	54.385	Amphiprion_ocellaris
ENSCCAG00000035801	SMG6	71	59.578	ENSAPEG00000019101	smg6	75	54.538	Amphiprion_percula
ENSCCAG00000035801	SMG6	84	54.314	ENSATEG00000006483	smg6	74	53.940	Anabas_testudineus
ENSCCAG00000035801	SMG6	87	57.334	ENSACAG00000011783	SMG6	99	58.470	Anolis_carolinensis
ENSCCAG00000035801	SMG6	100	98.168	ENSANAG00000035760	SMG6	100	98.168	Aotus_nancymaae
ENSCCAG00000035801	SMG6	71	59.263	ENSACLG00000005288	smg6	80	55.347	Astatotilapia_calliptera
ENSCCAG00000035801	SMG6	68	63.068	ENSAMXG00000017326	smg6	99	50.342	Astyanax_mexicanus
ENSCCAG00000035801	SMG6	100	92.882	ENSBTAG00000000267	SMG6	100	92.882	Bos_taurus
ENSCCAG00000035801	SMG6	100	97.322	ENSCJAG00000001820	SMG6	100	97.322	Callithrix_jacchus
ENSCCAG00000035801	SMG6	100	92.882	ENSCAFG00000019260	SMG6	100	92.882	Canis_familiaris
ENSCCAG00000035801	SMG6	100	92.882	ENSCAFG00020009770	SMG6	100	92.882	Canis_lupus_dingo
ENSCCAG00000035801	SMG6	100	93.023	ENSCHIG00000021998	SMG6	100	93.023	Capra_hircus
ENSCCAG00000035801	SMG6	100	93.728	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSCCAG00000035801	SMG6	98	77.050	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSCCAG00000035801	SMG6	100	90.704	ENSCPOG00000014878	SMG6	100	90.704	Cavia_porcellus
ENSCCAG00000035801	SMG6	100	95.701	ENSCATG00000031956	SMG6	100	95.701	Cercocebus_atys
ENSCCAG00000035801	SMG6	100	92.178	ENSCLAG00000006748	SMG6	100	92.178	Chinchilla_lanigera
ENSCCAG00000035801	SMG6	100	96.054	ENSCSAG00000013800	SMG6	100	96.054	Chlorocebus_sabaeus
ENSCCAG00000035801	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSCCAG00000035801	SMG6	100	72.361	ENSCPBG00000020369	SMG6	100	72.935	Chrysemys_picta_bellii
ENSCCAG00000035801	SMG6	98	95.752	ENSCANG00000031764	SMG6	100	98.239	Colobus_angolensis_palliatus
ENSCCAG00000035801	SMG6	55	86.957	ENSCGRG00001019595	Smg6	98	86.957	Cricetulus_griseus_chok1gshd
ENSCCAG00000035801	SMG6	98	84.438	ENSCGRG00000007782	Smg6	100	84.582	Cricetulus_griseus_crigri
ENSCCAG00000035801	SMG6	86	53.419	ENSCSEG00000012757	smg6	82	52.576	Cynoglossus_semilaevis
ENSCCAG00000035801	SMG6	72	57.285	ENSCVAG00000012789	smg6	74	53.490	Cyprinodon_variegatus
ENSCCAG00000035801	SMG6	100	49.967	ENSDARG00000100481	smg6	100	50.536	Danio_rerio
ENSCCAG00000035801	SMG6	100	92.671	ENSDNOG00000048283	SMG6	100	92.671	Dasypus_novemcinctus
ENSCCAG00000035801	SMG6	100	88.772	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSCCAG00000035801	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSCCAG00000035801	SMG6	73	50.389	ENSEBUG00000005059	smg6	73	48.883	Eptatretus_burgeri
ENSCCAG00000035801	SMG6	99	93.719	ENSEASG00005009318	SMG6	99	93.719	Equus_asinus_asinus
ENSCCAG00000035801	SMG6	99	93.437	ENSECAG00000006519	SMG6	99	93.437	Equus_caballus
ENSCCAG00000035801	SMG6	100	82.171	ENSEEUG00000003493	SMG6	100	82.171	Erinaceus_europaeus
ENSCCAG00000035801	SMG6	71	60.648	ENSELUG00000005934	smg6	69	55.760	Esox_lucius
ENSCCAG00000035801	SMG6	100	94.010	ENSFCAG00000028817	SMG6	100	94.010	Felis_catus
ENSCCAG00000035801	SMG6	98	72.108	ENSFALG00000006538	SMG6	100	72.179	Ficedula_albicollis
ENSCCAG00000035801	SMG6	100	91.896	ENSFDAG00000015106	SMG6	100	91.896	Fukomys_damarensis
ENSCCAG00000035801	SMG6	83	52.685	ENSFHEG00000013282	smg6	75	53.001	Fundulus_heteroclitus
ENSCCAG00000035801	SMG6	53	69.626	ENSGMOG00000019077	smg6	68	69.626	Gadus_morhua
ENSCCAG00000035801	SMG6	100	72.272	ENSGALG00000003108	SMG6	98	72.342	Gallus_gallus
ENSCCAG00000035801	SMG6	79	55.187	ENSGAFG00000000379	smg6	74	54.020	Gambusia_affinis
ENSCCAG00000035801	SMG6	91	54.349	ENSGACG00000020521	smg6	100	54.052	Gasterosteus_aculeatus
ENSCCAG00000035801	SMG6	98	72.017	ENSGAGG00000025617	SMG6	100	72.656	Gopherus_agassizii
ENSCCAG00000035801	SMG6	100	96.406	ENSGGOG00000017156	SMG6	100	96.406	Gorilla_gorilla
ENSCCAG00000035801	SMG6	83	54.645	ENSHBUG00000021311	smg6	74	55.634	Haplochromis_burtoni
ENSCCAG00000035801	SMG6	100	91.626	ENSHGLG00000012882	SMG6	100	91.626	Heterocephalus_glaber_female
ENSCCAG00000035801	SMG6	100	91.696	ENSHGLG00100017815	SMG6	100	91.696	Heterocephalus_glaber_male
ENSCCAG00000035801	SMG6	77	56.261	ENSHCOG00000008761	smg6	97	53.571	Hippocampus_comes
ENSCCAG00000035801	SMG6	89	52.686	ENSIPUG00000012493	smg6	80	51.936	Ictalurus_punctatus
ENSCCAG00000035801	SMG6	100	93.869	ENSSTOG00000028127	SMG6	100	93.869	Ictidomys_tridecemlineatus
ENSCCAG00000035801	SMG6	79	88.136	ENSJJAG00000015367	Smg6	95	86.222	Jaculus_jaculus
ENSCCAG00000035801	SMG6	73	58.866	ENSKMAG00000000279	smg6	75	54.553	Kryptolebias_marmoratus
ENSCCAG00000035801	SMG6	86	53.172	ENSLBEG00000002184	smg6	76	52.994	Labrus_bergylta
ENSCCAG00000035801	SMG6	55	59.287	ENSLACG00000000806	-	98	59.582	Latimeria_chalumnae
ENSCCAG00000035801	SMG6	73	65.320	ENSLOCG00000006448	smg6	99	54.928	Lepisosteus_oculatus
ENSCCAG00000035801	SMG6	100	92.600	ENSLAFG00000001261	SMG6	100	92.600	Loxodonta_africana
ENSCCAG00000035801	SMG6	100	95.983	ENSMFAG00000003394	SMG6	100	95.983	Macaca_fascicularis
ENSCCAG00000035801	SMG6	100	95.983	ENSMMUG00000023161	SMG6	100	95.983	Macaca_mulatta
ENSCCAG00000035801	SMG6	100	91.075	ENSMNEG00000044592	SMG6	100	91.075	Macaca_nemestrina
ENSCCAG00000035801	SMG6	98	93.439	ENSMLEG00000029353	SMG6	100	98.308	Mandrillus_leucophaeus
ENSCCAG00000035801	SMG6	85	56.009	ENSMAMG00000020119	smg6	80	55.941	Mastacembelus_armatus
ENSCCAG00000035801	SMG6	71	59.263	ENSMZEG00005024736	smg6	74	55.312	Maylandia_zebra
ENSCCAG00000035801	SMG6	73	66.131	ENSMGAG00000005401	-	99	66.131	Meleagris_gallopavo
ENSCCAG00000035801	SMG6	100	94.856	ENSMICG00000012913	SMG6	100	94.856	Microcebus_murinus
ENSCCAG00000035801	SMG6	100	47.172	ENSMMOG00000010883	smg6	100	47.973	Mola_mola
ENSCCAG00000035801	SMG6	100	85.302	ENSMODG00000010622	SMG6	100	85.302	Monodelphis_domestica
ENSCCAG00000035801	SMG6	85	54.170	ENSMALG00000001106	smg6	74	54.587	Monopterus_albus
ENSCCAG00000035801	SMG6	100	91.402	MGP_CAROLIEiJ_G0016729	Smg6	100	91.402	Mus_caroli
ENSCCAG00000035801	SMG6	100	91.332	ENSMUSG00000038290	Smg6	100	91.332	Mus_musculus
ENSCCAG00000035801	SMG6	100	90.627	MGP_PahariEiJ_G0017866	Smg6	100	90.627	Mus_pahari
ENSCCAG00000035801	SMG6	100	91.261	MGP_SPRETEiJ_G0017572	Smg6	100	91.261	Mus_spretus
ENSCCAG00000035801	SMG6	100	93.305	ENSMPUG00000013046	SMG6	100	93.305	Mustela_putorius_furo
ENSCCAG00000035801	SMG6	100	93.305	ENSMLUG00000005739	SMG6	100	93.305	Myotis_lucifugus
ENSCCAG00000035801	SMG6	98	90.425	ENSNGAG00000007287	Smg6	100	91.139	Nannospalax_galili
ENSCCAG00000035801	SMG6	83	54.046	ENSNBRG00000009511	smg6	81	54.902	Neolamprologus_brichardi
ENSCCAG00000035801	SMG6	98	95.624	ENSNLEG00000017171	SMG6	100	98.434	Nomascus_leucogenys
ENSCCAG00000035801	SMG6	98	81.609	ENSMEUG00000015804	SMG6	100	81.609	Notamacropus_eugenii
ENSCCAG00000035801	SMG6	62	90.455	ENSOPRG00000000579	SMG6	84	96.842	Ochotona_princeps
ENSCCAG00000035801	SMG6	100	85.433	ENSODEG00000008038	SMG6	100	84.188	Octodon_degus
ENSCCAG00000035801	SMG6	100	51.340	ENSONIG00000005594	smg6	100	52.235	Oreochromis_niloticus
ENSCCAG00000035801	SMG6	100	92.752	ENSOCUG00000013018	SMG6	100	92.752	Oryctolagus_cuniculus
ENSCCAG00000035801	SMG6	89	51.582	ENSORLG00000003317	smg6	79	52.199	Oryzias_latipes
ENSCCAG00000035801	SMG6	89	51.879	ENSORLG00020015343	smg6	79	52.129	Oryzias_latipes_hni
ENSCCAG00000035801	SMG6	89	51.765	ENSORLG00015020454	smg6	79	52.381	Oryzias_latipes_hsok
ENSCCAG00000035801	SMG6	83	53.406	ENSOMEG00000010838	smg6	75	54.009	Oryzias_melastigma
ENSCCAG00000035801	SMG6	100	93.944	ENSOGAG00000004483	SMG6	100	93.944	Otolemur_garnettii
ENSCCAG00000035801	SMG6	100	91.268	ENSOARG00000015076	SMG6	100	92.852	Ovis_aries
ENSCCAG00000035801	SMG6	100	96.335	ENSPPAG00000043296	SMG6	100	96.335	Pan_paniscus
ENSCCAG00000035801	SMG6	100	94.080	ENSPPRG00000014581	SMG6	100	94.080	Panthera_pardus
ENSCCAG00000035801	SMG6	98	94.152	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSCCAG00000035801	SMG6	100	96.265	ENSPTRG00000008544	SMG6	100	98.434	Pan_troglodytes
ENSCCAG00000035801	SMG6	100	95.913	ENSPANG00000024588	SMG6	100	95.913	Papio_anubis
ENSCCAG00000035801	SMG6	89	70.938	ENSPSIG00000006660	SMG6	96	71.016	Pelodiscus_sinensis
ENSCCAG00000035801	SMG6	100	49.735	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSCCAG00000035801	SMG6	100	91.896	ENSPEMG00000020707	Smg6	100	91.896	Peromyscus_maniculatus_bairdii
ENSCCAG00000035801	SMG6	100	51.604	ENSPFOG00000012035	smg6	100	51.438	Poecilia_formosa
ENSCCAG00000035801	SMG6	77	56.555	ENSPLAG00000017660	smg6	74	54.003	Poecilia_latipinna
ENSCCAG00000035801	SMG6	77	56.667	ENSPMEG00000000258	smg6	74	54.317	Poecilia_mexicana
ENSCCAG00000035801	SMG6	83	54.118	ENSPREG00000010066	smg6	74	53.997	Poecilia_reticulata
ENSCCAG00000035801	SMG6	100	91.069	ENSPPYG00000007790	SMG6	100	91.069	Pongo_abelii
ENSCCAG00000035801	SMG6	100	88.513	ENSPCAG00000000552	SMG6	100	88.513	Procavia_capensis
ENSCCAG00000035801	SMG6	100	94.644	ENSPCOG00000020925	SMG6	100	94.644	Propithecus_coquereli
ENSCCAG00000035801	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSCCAG00000035801	SMG6	83	55.466	ENSPNYG00000024151	smg6	79	57.443	Pundamilia_nyererei
ENSCCAG00000035801	SMG6	85	51.719	ENSPNAG00000015480	smg6	90	47.323	Pygocentrus_nattereri
ENSCCAG00000035801	SMG6	100	91.473	ENSRNOG00000003041	Smg6	100	91.473	Rattus_norvegicus
ENSCCAG00000035801	SMG6	100	95.983	ENSRBIG00000024746	SMG6	100	95.983	Rhinopithecus_bieti
ENSCCAG00000035801	SMG6	100	96.054	ENSRROG00000030423	SMG6	100	97.847	Rhinopithecus_roxellana
ENSCCAG00000035801	SMG6	100	98.238	ENSSBOG00000022518	SMG6	100	96.476	Saimiri_boliviensis_boliviensis
ENSCCAG00000035801	SMG6	98	84.577	ENSSHAG00000010045	SMG6	98	84.577	Sarcophilus_harrisii
ENSCCAG00000035801	SMG6	83	55.322	ENSSMAG00000019777	smg6	73	54.716	Scophthalmus_maximus
ENSCCAG00000035801	SMG6	83	55.035	ENSSDUG00000016412	smg6	74	54.914	Seriola_dumerili
ENSCCAG00000035801	SMG6	80	54.039	ENSSLDG00000020747	smg6	77	53.834	Seriola_lalandi_dorsalis
ENSCCAG00000035801	SMG6	99	70.153	ENSSPUG00000007152	SMG6	99	70.035	Sphenodon_punctatus
ENSCCAG00000035801	SMG6	71	59.083	ENSSPAG00000015633	smg6	75	54.096	Stegastes_partitus
ENSCCAG00000035801	SMG6	100	92.324	ENSSSCG00000017826	SMG6	100	92.324	Sus_scrofa
ENSCCAG00000035801	SMG6	100	72.651	ENSTGUG00000005836	SMG6	100	72.791	Taeniopygia_guttata
ENSCCAG00000035801	SMG6	100	48.705	ENSTRUG00000000358	smg6	81	55.529	Takifugu_rubripes
ENSCCAG00000035801	SMG6	100	49.669	ENSTNIG00000016164	smg6	100	50.000	Tetraodon_nigroviridis
ENSCCAG00000035801	SMG6	100	89.500	ENSTBEG00000011424	SMG6	100	89.500	Tupaia_belangeri
ENSCCAG00000035801	SMG6	91	91.515	ENSTTRG00000001175	SMG6	91	91.515	Tursiops_truncatus
ENSCCAG00000035801	SMG6	100	93.319	ENSUAMG00000025152	SMG6	100	93.300	Ursus_americanus
ENSCCAG00000035801	SMG6	98	93.646	ENSUMAG00000009306	SMG6	100	93.646	Ursus_maritimus
ENSCCAG00000035801	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSCCAG00000035801	SMG6	100	92.671	ENSVVUG00000021727	SMG6	100	92.671	Vulpes_vulpes
ENSCCAG00000035801	SMG6	98	59.097	ENSXETG00000023799	SMG6	100	58.877	Xenopus_tropicalis
ENSCCAG00000035801	SMG6	72	59.981	ENSXCOG00000009867	smg6	74	55.060	Xiphophorus_couchianus
ENSCCAG00000035801	SMG6	83	54.460	ENSXMAG00000010321	smg6	74	54.418	Xiphophorus_maculatus