EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000036828 (Gene tree)
Gene ID: 108291450
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 154024 bases
Position: chrKV389444.1:405418-559441
Accession: 108291450
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000038110	ResIII	PF04851.15	1.9e-08	1	1
ENSCCAP00000038105	ResIII	PF04851.15	9.8e-08	1	1
ENSCCAP00000038097	ResIII	PF04851.15	9.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000055892	CHD6-202	10615	XM_017511844	ENSCCAP00000038097	2716 (aa)	XP_017367333	A0A2K5SCJ9
ENSCCAT00000055772	CHD6-201	1017	-	ENSCCAP00000037980	338 (aa)	-	A0A2K5SC76
ENSCCAT00000055900	CHD6-203	8079	-	ENSCCAP00000038105	2692 (aa)	-	A0A2K5SCK2
ENSCCAT00000055905	CHD6-204	1641	-	ENSCCAP00000038110	546 (aa)	-	A0A2K5SCL0

Gene Model

Click here to download ENSCCAG00000036828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000036828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000036828	CHD6	99	72.894	ENSCCAG00000025831	CHD7	71	65.558
ENSCCAG00000036828	CHD6	68	37.731	ENSCCAG00000036079	CHD1L	86	41.489
ENSCCAG00000036828	CHD6	99	72.344	ENSCCAG00000020467	CHD8	70	62.907
ENSCCAG00000036828	CHD6	77	31.078	ENSCCAG00000022264	SMARCAD1	84	35.385
ENSCCAG00000036828	CHD6	88	41.300	ENSCCAG00000024756	CHD5	54	39.443
ENSCCAG00000036828	CHD6	85	39.596	ENSCCAG00000035304	-	53	35.111
ENSCCAG00000036828	CHD6	72	41.162	ENSCCAG00000027215	SMARCA5	52	42.259
ENSCCAG00000036828	CHD6	99	71.743	ENSCCAG00000036178	CHD9	91	44.872

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000036828	CHD6	100	97.202	ENSG00000124177	CHD6	100	99.329	Homo_sapiens
ENSCCAG00000036828	CHD6	99	82.418	ENSAPOG00000013736	chd6	67	72.007	Acanthochromis_polyacanthus
ENSCCAG00000036828	CHD6	99	93.394	ENSAMEG00000009496	CHD6	100	91.621	Ailuropoda_melanoleuca
ENSCCAG00000036828	CHD6	99	82.051	ENSATEG00000005608	chd6	62	77.326	Anabas_testudineus
ENSCCAG00000036828	CHD6	99	89.541	ENSAPLG00000015592	CHD6	100	72.479	Anas_platyrhynchos
ENSCCAG00000036828	CHD6	99	80.926	ENSACAG00000006842	CHD6	94	73.874	Anolis_carolinensis
ENSCCAG00000036828	CHD6	100	100.000	ENSANAG00000037548	CHD6	100	100.000	Aotus_nancymaae
ENSCCAG00000036828	CHD6	94	86.408	ENSAMXG00000009576	chd6	74	72.544	Astyanax_mexicanus
ENSCCAG00000036828	CHD6	99	93.211	ENSBTAG00000005733	CHD6	100	88.142	Bos_taurus
ENSCCAG00000036828	CHD6	100	99.817	ENSCJAG00000017920	CHD6	100	99.817	Callithrix_jacchus
ENSCCAG00000036828	CHD6	99	93.394	ENSCAFG00000009236	CHD6	100	91.474	Canis_familiaris
ENSCCAG00000036828	CHD6	100	97.985	ENSCAFG00020012906	CHD6	100	97.985	Canis_lupus_dingo
ENSCCAG00000036828	CHD6	99	93.578	ENSCHIG00000017606	CHD6	100	88.326	Capra_hircus
ENSCCAG00000036828	CHD6	84	92.497	ENSTSYG00000014635	CHD6	100	92.497	Carlito_syrichta
ENSCCAG00000036828	CHD6	99	93.394	ENSCPOG00000015641	CHD6	100	91.327	Cavia_porcellus
ENSCCAG00000036828	CHD6	100	100.000	ENSCATG00000039248	CHD6	100	100.000	Cercocebus_atys
ENSCCAG00000036828	CHD6	99	93.211	ENSCLAG00000013743	CHD6	100	90.906	Chinchilla_lanigera
ENSCCAG00000036828	CHD6	100	97.128	ENSCSAG00000013997	CHD6	100	97.128	Chlorocebus_sabaeus
ENSCCAG00000036828	CHD6	99	87.156	ENSCHOG00000012647	CHD6	95	89.921	Choloepus_hoffmanni
ENSCCAG00000036828	CHD6	99	89.358	ENSCPBG00000019382	CHD6	99	73.372	Chrysemys_picta_bellii
ENSCCAG00000036828	CHD6	100	100.000	ENSCANG00000043435	CHD6	100	100.000	Colobus_angolensis_palliatus
ENSCCAG00000036828	CHD6	99	91.376	ENSCGRG00001002694	Chd6	100	89.526	Cricetulus_griseus_chok1gshd
ENSCCAG00000036828	CHD6	100	97.253	ENSCGRG00000006749	-	100	97.253	Cricetulus_griseus_crigri
ENSCCAG00000036828	CHD6	91	88.956	ENSDARG00000017244	chd6	79	73.678	Danio_rerio
ENSCCAG00000036828	CHD6	99	92.844	ENSDNOG00000004176	CHD6	99	90.564	Dasypus_novemcinctus
ENSCCAG00000036828	CHD6	100	98.352	ENSEASG00005023433	CHD6	100	98.352	Equus_asinus_asinus
ENSCCAG00000036828	CHD6	99	93.394	ENSECAG00000011761	CHD6	100	92.350	Equus_caballus
ENSCCAG00000036828	CHD6	94	85.243	ENSELUG00000012309	chd6	92	80.092	Esox_lucius
ENSCCAG00000036828	CHD6	99	93.394	ENSFCAG00000003572	CHD6	100	91.694	Felis_catus
ENSCCAG00000036828	CHD6	99	88.991	ENSFALG00000012563	CHD6	98	71.197	Ficedula_albicollis
ENSCCAG00000036828	CHD6	99	92.661	ENSFDAG00000013791	CHD6	99	91.593	Fukomys_damarensis
ENSCCAG00000036828	CHD6	89	83.197	ENSGMOG00000011715	chd6	84	69.706	Gadus_morhua
ENSCCAG00000036828	CHD6	94	80.233	ENSGACG00000000037	chd6	86	69.168	Gasterosteus_aculeatus
ENSCCAG00000036828	CHD6	61	94.012	ENSGAGG00000007475	-	79	94.169	Gopherus_agassizii
ENSCCAG00000036828	CHD6	100	100.000	ENSGGOG00000013123	CHD6	100	100.000	Gorilla_gorilla
ENSCCAG00000036828	CHD6	99	81.319	ENSHBUG00000014701	chd6	62	76.807	Haplochromis_burtoni
ENSCCAG00000036828	CHD6	99	92.844	ENSHGLG00000004548	CHD6	100	91.697	Heterocephalus_glaber_female
ENSCCAG00000036828	CHD6	99	92.844	ENSHGLG00100006401	CHD6	100	91.697	Heterocephalus_glaber_male
ENSCCAG00000036828	CHD6	94	85.631	ENSIPUG00000003692	chd6	74	76.385	Ictalurus_punctatus
ENSCCAG00000036828	CHD6	99	93.394	ENSSTOG00000013382	CHD6	100	92.282	Ictidomys_tridecemlineatus
ENSCCAG00000036828	CHD6	99	84.404	ENSLACG00000010881	CHD6	84	77.238	Latimeria_chalumnae
ENSCCAG00000036828	CHD6	94	86.990	ENSLOCG00000007386	chd6	84	75.543	Lepisosteus_oculatus
ENSCCAG00000036828	CHD6	99	93.028	ENSLAFG00000012144	CHD6	100	91.771	Loxodonta_africana
ENSCCAG00000036828	CHD6	100	100.000	ENSMFAG00000032830	CHD6	100	100.000	Macaca_fascicularis
ENSCCAG00000036828	CHD6	100	100.000	ENSMMUG00000020458	CHD6	100	100.000	Macaca_mulatta
ENSCCAG00000036828	CHD6	100	100.000	ENSMNEG00000040847	CHD6	100	100.000	Macaca_nemestrina
ENSCCAG00000036828	CHD6	100	100.000	ENSMLEG00000031965	CHD6	100	100.000	Mandrillus_leucophaeus
ENSCCAG00000036828	CHD6	99	81.685	ENSMAMG00000013111	chd6	62	77.241	Mastacembelus_armatus
ENSCCAG00000036828	CHD6	99	89.011	ENSMGAG00000001121	CHD6	100	71.908	Meleagris_gallopavo
ENSCCAG00000036828	CHD6	100	99.084	ENSMICG00000016641	CHD6	100	99.084	Microcebus_murinus
ENSCCAG00000036828	CHD6	99	91.560	ENSMOCG00000014004	-	97	94.444	Microtus_ochrogaster
ENSCCAG00000036828	CHD6	99	91.743	ENSMODG00000000720	-	99	81.015	Monodelphis_domestica
ENSCCAG00000036828	CHD6	99	91.009	MGP_CAROLIEiJ_G0024604	Chd6	100	94.684	Mus_caroli
ENSCCAG00000036828	CHD6	99	91.009	ENSMUSG00000057133	Chd6	100	94.599	Mus_musculus
ENSCCAG00000036828	CHD6	99	91.193	MGP_PahariEiJ_G0026048	Chd6	100	95.021	Mus_pahari
ENSCCAG00000036828	CHD6	99	91.009	MGP_SPRETEiJ_G0025526	Chd6	100	94.684	Mus_spretus
ENSCCAG00000036828	CHD6	99	93.394	ENSMPUG00000017695	CHD6	100	90.176	Mustela_putorius_furo
ENSCCAG00000036828	CHD6	99	93.028	ENSMLUG00000016247	CHD6	100	90.849	Myotis_lucifugus
ENSCCAG00000036828	CHD6	99	81.550	ENSNBRG00000013839	chd6	79	73.112	Neolamprologus_brichardi
ENSCCAG00000036828	CHD6	100	95.728	ENSNLEG00000006496	CHD6	99	95.728	Nomascus_leucogenys
ENSCCAG00000036828	CHD6	100	87.725	ENSOPRG00000013376	-	100	87.725	Ochotona_princeps
ENSCCAG00000036828	CHD6	99	81.502	ENSONIG00000000393	chd6	85	73.655	Oreochromis_niloticus
ENSCCAG00000036828	CHD6	99	89.541	ENSOANG00000014347	CHD6	99	70.203	Ornithorhynchus_anatinus
ENSCCAG00000036828	CHD6	99	93.578	ENSOCUG00000012394	CHD6	100	89.849	Oryctolagus_cuniculus
ENSCCAG00000036828	CHD6	96	84.571	ENSORLG00020021891	chd6	99	84.571	Oryzias_latipes_hni
ENSCCAG00000036828	CHD6	99	93.211	ENSOGAG00000002427	CHD6	100	91.568	Otolemur_garnettii
ENSCCAG00000036828	CHD6	99	93.578	ENSOARG00000002597	CHD6	100	86.113	Ovis_aries
ENSCCAG00000036828	CHD6	99	93.394	ENSPPRG00000014756	CHD6	100	91.804	Panthera_pardus
ENSCCAG00000036828	CHD6	99	93.394	ENSPTIG00000011094	CHD6	100	91.694	Panthera_tigris_altaica
ENSCCAG00000036828	CHD6	100	100.000	ENSPTRG00000013504	CHD6	99	100.000	Pan_troglodytes
ENSCCAG00000036828	CHD6	100	99.817	ENSPANG00000025554	CHD6	100	99.817	Papio_anubis
ENSCCAG00000036828	CHD6	94	86.990	ENSPKIG00000005578	chd6	79	73.122	Paramormyrops_kingsleyae
ENSCCAG00000036828	CHD6	99	82.202	ENSPMGG00000014877	chd6	88	76.951	Periophthalmus_magnuspinnatus
ENSCCAG00000036828	CHD6	100	97.253	ENSPEMG00000014672	-	100	97.253	Peromyscus_maniculatus_bairdii
ENSCCAG00000036828	CHD6	99	91.743	ENSPCIG00000028037	CHD6	100	80.675	Phascolarctos_cinereus
ENSCCAG00000036828	CHD6	99	81.319	ENSPLAG00000003128	chd6	70	73.114	Poecilia_latipinna
ENSCCAG00000036828	CHD6	99	81.319	ENSPREG00000022653	chd6	99	86.447	Poecilia_reticulata
ENSCCAG00000036828	CHD6	100	97.313	ENSPPYG00000011016	CHD6	100	97.313	Pongo_abelii
ENSCCAG00000036828	CHD6	100	99.634	ENSPCOG00000001089	CHD6	100	99.634	Propithecus_coquereli
ENSCCAG00000036828	CHD6	99	81.319	ENSPNYG00000022516	chd6	78	73.885	Pundamilia_nyererei
ENSCCAG00000036828	CHD6	94	86.990	ENSPNAG00000012825	chd6	76	73.806	Pygocentrus_nattereri
ENSCCAG00000036828	CHD6	99	90.826	ENSRNOG00000016744	Chd6	100	87.505	Rattus_norvegicus
ENSCCAG00000036828	CHD6	100	100.000	ENSSBOG00000022089	CHD6	99	100.000	Saimiri_boliviensis_boliviensis
ENSCCAG00000036828	CHD6	99	91.560	ENSSHAG00000017072	CHD6	100	80.242	Sarcophilus_harrisii
ENSCCAG00000036828	CHD6	94	86.990	ENSSFOG00015012920	chd6	81	72.843	Scleropages_formosus
ENSCCAG00000036828	CHD6	84	99.782	ENSSARG00000002615	-	61	99.342	Sorex_araneus
ENSCCAG00000036828	CHD6	99	93.394	ENSSSCG00000007360	CHD6	100	90.987	Sus_scrofa
ENSCCAG00000036828	CHD6	99	89.358	ENSTGUG00000003179	CHD6	99	73.652	Taeniopygia_guttata
ENSCCAG00000036828	CHD6	99	80.220	ENSTNIG00000017487	chd6	100	57.200	Tetraodon_nigroviridis
ENSCCAG00000036828	CHD6	99	91.376	ENSTTRG00000013438	CHD6	100	87.812	Tursiops_truncatus
ENSCCAG00000036828	CHD6	100	97.985	ENSUAMG00000024036	CHD6	100	97.985	Ursus_americanus
ENSCCAG00000036828	CHD6	100	97.985	ENSUMAG00000002017	CHD6	100	97.985	Ursus_maritimus
ENSCCAG00000036828	CHD6	98	88.037	ENSVPAG00000007941	CHD6	93	89.733	Vicugna_pacos
ENSCCAG00000036828	CHD6	99	93.394	ENSVVUG00000029164	CHD6	100	91.621	Vulpes_vulpes
ENSCCAG00000036828	CHD6	99	64.037	ENSXETG00000021445	chd6	87	71.107	Xenopus_tropicalis