EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCCAG00000036847 (Gene tree)
Gene ID: 108318497
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Plus strand
Length: 446084 bases
Position: chrKV389645.1:1990469-2436552
Accession: 108318497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000038054	TUDOR	PF00567.24	1.1e-27	1	1
ENSCCAP00000038048	TUDOR	PF00567.24	1.1e-27	1	1
ENSCCAP00000038042	TUDOR	PF00567.24	1.2e-27	1	1
ENSCCAP00000038048	SNase	PF00565.17	1.6e-69	1	5
ENSCCAP00000038048	SNase	PF00565.17	1.6e-69	2	5
ENSCCAP00000038048	SNase	PF00565.17	1.6e-69	3	5
ENSCCAP00000038048	SNase	PF00565.17	1.6e-69	4	5
ENSCCAP00000038048	SNase	PF00565.17	1.6e-69	5	5
ENSCCAP00000038042	SNase	PF00565.17	1.7e-69	1	5
ENSCCAP00000038042	SNase	PF00565.17	1.7e-69	2	5
ENSCCAP00000038042	SNase	PF00565.17	1.7e-69	3	5
ENSCCAP00000038042	SNase	PF00565.17	1.7e-69	4	5
ENSCCAP00000038042	SNase	PF00565.17	1.7e-69	5	5
ENSCCAP00000038054	SNase	PF00565.17	1.2e-60	1	5
ENSCCAP00000038054	SNase	PF00565.17	1.2e-60	2	5
ENSCCAP00000038054	SNase	PF00565.17	1.2e-60	3	5
ENSCCAP00000038054	SNase	PF00565.17	1.2e-60	4	5
ENSCCAP00000038054	SNase	PF00565.17	1.2e-60	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000055836	SND1-201	6927	XM_017549554	ENSCCAP00000038042	910 (aa)	XP_017405043	A0A2K5SCD9
ENSCCAT00000055842	SND1-202	2709	-	ENSCCAP00000038048	902 (aa)	-	A0A2K5SCG0
ENSCCAT00000055848	SND1-203	2622	-	ENSCCAP00000038054	873 (aa)	-	A0A2K5SCC3

Gene Model

Click here to download ENSCCAG00000036847's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000036847's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000036847	SND1	100	99.231	ENSG00000197157	SND1	100	99.231	Homo_sapiens
ENSCCAG00000036847	SND1	100	83.772	ENSAPOG00000017599	snd1	99	84.650	Acanthochromis_polyacanthus
ENSCCAG00000036847	SND1	100	98.904	ENSAMEG00000004664	SND1	94	98.904	Ailuropoda_melanoleuca
ENSCCAG00000036847	SND1	98	82.083	ENSACIG00000003551	snd1	99	81.960	Amphilophus_citrinellus
ENSCCAG00000036847	SND1	100	83.553	ENSAOCG00000014166	snd1	99	84.427	Amphiprion_ocellaris
ENSCCAG00000036847	SND1	100	83.553	ENSAPEG00000007067	snd1	99	84.427	Amphiprion_percula
ENSCCAG00000036847	SND1	98	82.905	ENSATEG00000018475	snd1	88	84.151	Anabas_testudineus
ENSCCAG00000036847	SND1	100	99.771	ENSANAG00000034463	SND1	100	99.771	Aotus_nancymaae
ENSCCAG00000036847	SND1	98	84.312	ENSACLG00000022897	snd1	99	84.076	Astatotilapia_calliptera
ENSCCAG00000036847	SND1	100	83.664	ENSAMXG00000016318	snd1	98	84.855	Astyanax_mexicanus
ENSCCAG00000036847	SND1	100	99.011	ENSBTAG00000010692	SND1	100	99.011	Bos_taurus
ENSCCAG00000036847	SND1	99	46.214	WBGene00006626	tsn-1	98	47.311	Caenorhabditis_elegans
ENSCCAG00000036847	SND1	100	99.451	ENSCJAG00000017668	SND1	100	99.451	Callithrix_jacchus
ENSCCAG00000036847	SND1	100	99.341	ENSCAFG00000001700	SND1	100	99.341	Canis_familiaris
ENSCCAG00000036847	SND1	100	99.341	ENSCAFG00020021639	SND1	100	99.341	Canis_lupus_dingo
ENSCCAG00000036847	SND1	100	99.341	ENSCHIG00000023390	SND1	100	99.341	Capra_hircus
ENSCCAG00000036847	SND1	74	99.296	ENSTSYG00000004979	SND1	96	99.296	Carlito_syrichta
ENSCCAG00000036847	SND1	99	86.957	ENSCAPG00000010677	SND1	97	86.957	Cavia_aperea
ENSCCAG00000036847	SND1	100	98.462	ENSCPOG00000006251	SND1	100	98.462	Cavia_porcellus
ENSCCAG00000036847	SND1	100	99.451	ENSCATG00000035214	SND1	100	99.451	Cercocebus_atys
ENSCCAG00000036847	SND1	100	98.352	ENSCLAG00000011796	SND1	100	98.352	Chinchilla_lanigera
ENSCCAG00000036847	SND1	100	99.451	ENSCSAG00000010182	SND1	100	99.451	Chlorocebus_sabaeus
ENSCCAG00000036847	SND1	73	98.000	ENSCHOG00000002218	SND1	80	98.000	Choloepus_hoffmanni
ENSCCAG00000036847	SND1	100	92.088	ENSCPBG00000018094	SND1	100	91.079	Chrysemys_picta_bellii
ENSCCAG00000036847	SND1	100	56.013	ENSCING00000000524	-	98	57.143	Ciona_intestinalis
ENSCCAG00000036847	SND1	99	57.976	ENSCSAVG00000008807	-	99	58.122	Ciona_savignyi
ENSCCAG00000036847	SND1	100	99.451	ENSCANG00000035119	SND1	100	99.451	Colobus_angolensis_palliatus
ENSCCAG00000036847	SND1	100	97.363	ENSCGRG00001022514	Snd1	100	97.363	Cricetulus_griseus_chok1gshd
ENSCCAG00000036847	SND1	98	97.398	ENSCGRG00000012277	Snd1	99	97.398	Cricetulus_griseus_crigri
ENSCCAG00000036847	SND1	98	84.228	ENSCSEG00000008661	snd1	98	84.228	Cynoglossus_semilaevis
ENSCCAG00000036847	SND1	100	83.991	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSCCAG00000036847	SND1	100	84.447	ENSDARG00000006766	snd1	97	87.410	Danio_rerio
ENSCCAG00000036847	SND1	98	96.275	ENSDNOG00000006795	SND1	100	96.280	Dasypus_novemcinctus
ENSCCAG00000036847	SND1	100	98.901	ENSDORG00000000336	Snd1	100	98.901	Dipodomys_ordii
ENSCCAG00000036847	SND1	99	49.946	FBgn0035121	Tudor-SN	98	50.595	Drosophila_melanogaster
ENSCCAG00000036847	SND1	92	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSCCAG00000036847	SND1	61	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSCCAG00000036847	SND1	100	97.732	ENSEASG00005008513	SND1	100	97.732	Equus_asinus_asinus
ENSCCAG00000036847	SND1	100	99.341	ENSECAG00000011451	SND1	100	99.341	Equus_caballus
ENSCCAG00000036847	SND1	100	86.923	ENSEEUG00000014737	SND1	100	86.923	Erinaceus_europaeus
ENSCCAG00000036847	SND1	98	83.296	ENSELUG00000001805	snd1	95	83.166	Esox_lucius
ENSCCAG00000036847	SND1	100	99.341	ENSFCAG00000008289	SND1	100	99.341	Felis_catus
ENSCCAG00000036847	SND1	100	98.571	ENSFDAG00000015881	SND1	100	98.571	Fukomys_damarensis
ENSCCAG00000036847	SND1	99	82.093	ENSFHEG00000004093	snd1	97	84.633	Fundulus_heteroclitus
ENSCCAG00000036847	SND1	55	90.323	ENSGMOG00000018932	snd1	57	90.323	Gadus_morhua
ENSCCAG00000036847	SND1	100	84.211	ENSGAFG00000008421	snd1	99	85.214	Gambusia_affinis
ENSCCAG00000036847	SND1	100	53.746	ENSGACG00000019793	snd1	98	54.204	Gasterosteus_aculeatus
ENSCCAG00000036847	SND1	100	99.451	ENSGGOG00000009614	SND1	100	99.451	Gorilla_gorilla
ENSCCAG00000036847	SND1	99	83.590	ENSHBUG00000019135	snd1	99	84.076	Haplochromis_burtoni
ENSCCAG00000036847	SND1	100	98.242	ENSHGLG00000003618	SND1	100	98.242	Heterocephalus_glaber_female
ENSCCAG00000036847	SND1	99	97.790	ENSHGLG00100012449	SND1	100	97.790	Heterocephalus_glaber_male
ENSCCAG00000036847	SND1	100	83.004	ENSHCOG00000005266	snd1	98	84.228	Hippocampus_comes
ENSCCAG00000036847	SND1	100	82.713	ENSIPUG00000013279	snd1	98	83.648	Ictalurus_punctatus
ENSCCAG00000036847	SND1	100	98.901	ENSSTOG00000002140	SND1	100	98.901	Ictidomys_tridecemlineatus
ENSCCAG00000036847	SND1	100	99.011	ENSJJAG00000009561	Snd1	100	99.011	Jaculus_jaculus
ENSCCAG00000036847	SND1	100	83.991	ENSKMAG00000016997	snd1	98	85.011	Kryptolebias_marmoratus
ENSCCAG00000036847	SND1	100	84.899	ENSLBEG00000013563	snd1	99	83.426	Labrus_bergylta
ENSCCAG00000036847	SND1	99	85.447	ENSLOCG00000015537	snd1	98	85.447	Lepisosteus_oculatus
ENSCCAG00000036847	SND1	100	98.571	ENSLAFG00000009696	SND1	100	98.571	Loxodonta_africana
ENSCCAG00000036847	SND1	100	99.451	ENSMFAG00000038114	SND1	100	99.451	Macaca_fascicularis
ENSCCAG00000036847	SND1	100	99.451	ENSMMUG00000015432	SND1	100	99.451	Macaca_mulatta
ENSCCAG00000036847	SND1	100	99.451	ENSMNEG00000039808	SND1	100	99.451	Macaca_nemestrina
ENSCCAG00000036847	SND1	100	99.341	ENSMLEG00000029040	SND1	100	99.341	Mandrillus_leucophaeus
ENSCCAG00000036847	SND1	99	83.903	ENSMAMG00000011739	snd1	98	84.598	Mastacembelus_armatus
ENSCCAG00000036847	SND1	98	84.312	ENSMZEG00005005681	snd1	99	84.076	Maylandia_zebra
ENSCCAG00000036847	SND1	100	99.231	ENSMICG00000000097	SND1	100	99.231	Microcebus_murinus
ENSCCAG00000036847	SND1	100	98.242	ENSMOCG00000005040	Snd1	100	98.242	Microtus_ochrogaster
ENSCCAG00000036847	SND1	100	83.333	ENSMMOG00000001795	snd1	99	84.205	Mola_mola
ENSCCAG00000036847	SND1	100	96.154	ENSMODG00000015182	SND1	100	96.154	Monodelphis_domestica
ENSCCAG00000036847	SND1	100	83.224	ENSMALG00000012071	snd1	98	84.040	Monopterus_albus
ENSCCAG00000036847	SND1	100	97.912	MGP_CAROLIEiJ_G0028159	Snd1	100	97.912	Mus_caroli
ENSCCAG00000036847	SND1	100	97.692	ENSMUSG00000001424	Snd1	100	97.692	Mus_musculus
ENSCCAG00000036847	SND1	100	97.912	MGP_PahariEiJ_G0021917	Snd1	100	98.314	Mus_pahari
ENSCCAG00000036847	SND1	100	97.912	MGP_SPRETEiJ_G0029159	Snd1	100	97.912	Mus_spretus
ENSCCAG00000036847	SND1	100	98.681	ENSMPUG00000006545	SND1	100	98.681	Mustela_putorius_furo
ENSCCAG00000036847	SND1	98	97.430	ENSMLUG00000017130	SND1	99	97.430	Myotis_lucifugus
ENSCCAG00000036847	SND1	100	98.242	ENSNGAG00000011186	Snd1	100	98.242	Nannospalax_galili
ENSCCAG00000036847	SND1	98	84.199	ENSNBRG00000006681	snd1	99	83.964	Neolamprologus_brichardi
ENSCCAG00000036847	SND1	100	99.341	ENSNLEG00000012263	SND1	100	99.435	Nomascus_leucogenys
ENSCCAG00000036847	SND1	92	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSCCAG00000036847	SND1	100	98.571	ENSODEG00000011502	SND1	100	98.571	Octodon_degus
ENSCCAG00000036847	SND1	98	84.199	ENSONIG00000011481	snd1	96	83.964	Oreochromis_niloticus
ENSCCAG00000036847	SND1	98	94.796	ENSOANG00000000817	SND1	99	93.868	Ornithorhynchus_anatinus
ENSCCAG00000036847	SND1	100	97.692	ENSOCUG00000001620	SND1	100	97.692	Oryctolagus_cuniculus
ENSCCAG00000036847	SND1	98	83.973	ENSORLG00000015201	snd1	98	83.911	Oryzias_latipes
ENSCCAG00000036847	SND1	98	84.086	ENSORLG00020013991	snd1	98	84.022	Oryzias_latipes_hni
ENSCCAG00000036847	SND1	98	84.086	ENSORLG00015012436	snd1	98	84.022	Oryzias_latipes_hsok
ENSCCAG00000036847	SND1	100	83.114	ENSOMEG00000006406	snd1	98	84.340	Oryzias_melastigma
ENSCCAG00000036847	SND1	100	98.904	ENSOGAG00000013356	SND1	94	98.904	Otolemur_garnettii
ENSCCAG00000036847	SND1	98	96.380	ENSOARG00000002149	SND1	100	96.384	Ovis_aries
ENSCCAG00000036847	SND1	100	99.341	ENSPPAG00000042947	SND1	100	99.341	Pan_paniscus
ENSCCAG00000036847	SND1	100	99.341	ENSPPRG00000004494	SND1	100	99.341	Panthera_pardus
ENSCCAG00000036847	SND1	100	99.231	ENSPTIG00000014214	SND1	100	99.231	Panthera_tigris_altaica
ENSCCAG00000036847	SND1	100	99.341	ENSPTRG00000023911	SND1	100	99.341	Pan_troglodytes
ENSCCAG00000036847	SND1	98	99.435	ENSPANG00000011997	SND1	99	99.435	Papio_anubis
ENSCCAG00000036847	SND1	99	81.477	ENSPKIG00000023494	snd1	98	81.798	Paramormyrops_kingsleyae
ENSCCAG00000036847	SND1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSCCAG00000036847	SND1	100	98.132	ENSPEMG00000010240	Snd1	100	98.132	Peromyscus_maniculatus_bairdii
ENSCCAG00000036847	SND1	98	73.559	ENSPMAG00000007915	-	99	73.559	Petromyzon_marinus
ENSCCAG00000036847	SND1	100	96.484	ENSPCIG00000011561	SND1	100	96.484	Phascolarctos_cinereus
ENSCCAG00000036847	SND1	100	83.662	ENSPFOG00000001557	snd1	99	84.538	Poecilia_formosa
ENSCCAG00000036847	SND1	100	83.662	ENSPLAG00000018459	snd1	96	84.538	Poecilia_latipinna
ENSCCAG00000036847	SND1	100	84.101	ENSPMEG00000006803	snd1	99	84.983	Poecilia_mexicana
ENSCCAG00000036847	SND1	100	83.991	ENSPREG00000002189	snd1	99	84.872	Poecilia_reticulata
ENSCCAG00000036847	SND1	93	99.256	ENSPPYG00000017972	SND1	100	99.256	Pongo_abelii
ENSCCAG00000036847	SND1	100	86.703	ENSPCAG00000011305	SND1	99	86.622	Procavia_capensis
ENSCCAG00000036847	SND1	100	99.231	ENSPCOG00000026791	SND1	100	99.231	Propithecus_coquereli
ENSCCAG00000036847	SND1	100	97.363	ENSPVAG00000013945	SND1	100	97.363	Pteropus_vampyrus
ENSCCAG00000036847	SND1	98	84.312	ENSPNYG00000000932	snd1	99	84.076	Pundamilia_nyererei
ENSCCAG00000036847	SND1	100	83.589	ENSPNAG00000001206	snd1	98	84.556	Pygocentrus_nattereri
ENSCCAG00000036847	SND1	99	97.577	ENSRNOG00000031173	Snd1	99	97.577	Rattus_norvegicus
ENSCCAG00000036847	SND1	75	97.989	ENSRBIG00000027782	-	93	99.620	Rhinopithecus_bieti
ENSCCAG00000036847	SND1	100	99.451	ENSRROG00000033020	SND1	100	99.451	Rhinopithecus_roxellana
ENSCCAG00000036847	SND1	100	99.670	ENSSBOG00000032461	SND1	100	99.670	Saimiri_boliviensis_boliviensis
ENSCCAG00000036847	SND1	98	93.439	ENSSHAG00000015359	SND1	100	93.018	Sarcophilus_harrisii
ENSCCAG00000036847	SND1	100	82.481	ENSSFOG00015001103	snd1	98	83.574	Scleropages_formosus
ENSCCAG00000036847	SND1	98	83.669	ENSSMAG00000001932	snd1	93	83.408	Scophthalmus_maximus
ENSCCAG00000036847	SND1	100	83.553	ENSSDUG00000002699	snd1	92	84.427	Seriola_dumerili
ENSCCAG00000036847	SND1	100	76.316	ENSSLDG00000001950	snd1	98	77.086	Seriola_lalandi_dorsalis
ENSCCAG00000036847	SND1	88	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSCCAG00000036847	SND1	74	87.500	ENSSPUG00000017586	SND1	96	87.652	Sphenodon_punctatus
ENSCCAG00000036847	SND1	74	86.726	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSCCAG00000036847	SND1	100	99.011	ENSSSCG00000016590	SND1	100	99.011	Sus_scrofa
ENSCCAG00000036847	SND1	98	84.706	ENSTRUG00000014067	snd1	98	83.669	Takifugu_rubripes
ENSCCAG00000036847	SND1	100	83.224	ENSTNIG00000011019	snd1	98	84.228	Tetraodon_nigroviridis
ENSCCAG00000036847	SND1	94	93.278	ENSTBEG00000003999	SND1	100	93.278	Tupaia_belangeri
ENSCCAG00000036847	SND1	100	94.396	ENSTTRG00000006059	SND1	100	94.396	Tursiops_truncatus
ENSCCAG00000036847	SND1	93	99.240	ENSUAMG00000005604	-	93	99.240	Ursus_americanus
ENSCCAG00000036847	SND1	71	90.130	ENSUAMG00000002820	-	86	90.054	Ursus_americanus
ENSCCAG00000036847	SND1	100	99.121	ENSUMAG00000005960	SND1	100	99.121	Ursus_maritimus
ENSCCAG00000036847	SND1	79	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSCCAG00000036847	SND1	100	99.121	ENSVVUG00000007226	SND1	100	99.121	Vulpes_vulpes
ENSCCAG00000036847	SND1	98	84.746	ENSXETG00000023043	snd1	100	84.668	Xenopus_tropicalis
ENSCCAG00000036847	SND1	93	81.591	ENSXCOG00000013629	snd1	99	81.591	Xiphophorus_couchianus
ENSCCAG00000036847	SND1	100	84.211	ENSXMAG00000011469	snd1	99	85.095	Xiphophorus_maculatus