EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCCAG00000036872 (Gene tree)
Gene ID: 108309956
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Cebus_capucinus
Status: putative
Strand: Minus strand
Length: 16555 bases
Position: chrKV389525.1:1351343-1367897
Accession: 108309956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCCAP00000038085	RRM_1	PF00076.22	1.8e-18	1	1
ENSCCAP00000038082	RRM_1	PF00076.22	5.3e-18	1	1
ENSCCAP00000038087	RRM_1	PF00076.22	1.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCCAT00000055879	RBM38-202	2292	XM_017536571	ENSCCAP00000038085	121 (aa)	XP_017392060	A0A2K5SCH8
ENSCCAT00000055876	RBM38-201	2353	XM_017536569	ENSCCAP00000038082	239 (aa)	XP_017392058	A0A2K5SCI6
ENSCCAT00000055882	RBM38-203	276	-	ENSCCAP00000038087	91 (aa)	-	A0A2K5SCJ0

Gene Model

Click here to download ENSCCAG00000036872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCCAG00000036872's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCCAG00000036872	RBM38	61	41.333	ENSCCAG00000028588	-	90	41.333
ENSCCAG00000036872	RBM38	89	40.260	ENSCCAG00000033927	MSI2	66	40.260
ENSCCAG00000036872	RBM38	62	38.158	ENSCCAG00000037368	-	78	38.158
ENSCCAG00000036872	RBM38	67	37.333	ENSCCAG00000010302	HNRNPA0	51	37.333
ENSCCAG00000036872	RBM38	74	42.857	ENSCCAG00000029074	HNRNPA2B1	87	42.857
ENSCCAG00000036872	RBM38	81	91.837	ENSCCAG00000030791	RBM24	99	65.748
ENSCCAG00000036872	RBM38	69	35.714	ENSCCAG00000030130	SLIRP	74	35.714
ENSCCAG00000036872	RBM38	62	42.105	ENSCCAG00000038019	-	69	43.548
ENSCCAG00000036872	RBM38	51	41.935	ENSCCAG00000036263	-	74	41.935
ENSCCAG00000036872	RBM38	62	45.588	ENSCCAG00000037906	-	53	43.333
ENSCCAG00000036872	RBM38	62	32.836	ENSCCAG00000020531	-	66	32.836
ENSCCAG00000036872	RBM38	97	35.294	ENSCCAG00000023519	DAZAP1	50	34.862
ENSCCAG00000036872	RBM38	72	42.045	ENSCCAG00000034994	CIRBP	52	41.304
ENSCCAG00000036872	RBM38	62	38.462	ENSCCAG00000035552	-	50	38.462
ENSCCAG00000036872	RBM38	71	34.177	ENSCCAG00000036244	HNRNPAB	54	34.177
ENSCCAG00000036872	RBM38	63	42.373	ENSCCAG00000035567	MSI1	81	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCCAG00000036872	RBM38	100	99.174	ENSG00000132819	RBM38	100	99.174	Homo_sapiens
ENSCCAG00000036872	RBM38	82	90.099	ENSAPOG00000009939	-	94	68.018	Acanthochromis_polyacanthus
ENSCCAG00000036872	RBM38	81	85.859	ENSAPOG00000003301	rbm38	91	58.621	Acanthochromis_polyacanthus
ENSCCAG00000036872	RBM38	81	85.859	ENSACIG00000000010	rbm38	91	56.652	Amphilophus_citrinellus
ENSCCAG00000036872	RBM38	81	92.929	ENSACIG00000012502	-	100	89.744	Amphilophus_citrinellus
ENSCCAG00000036872	RBM38	81	85.859	ENSAOCG00000013497	-	91	58.621	Amphiprion_ocellaris
ENSCCAG00000036872	RBM38	100	79.675	ENSAOCG00000012559	RBM38	99	64.344	Amphiprion_ocellaris
ENSCCAG00000036872	RBM38	99	76.423	ENSAPEG00000013137	rbm38	99	59.836	Amphiprion_percula
ENSCCAG00000036872	RBM38	82	90.099	ENSAPEG00000023581	-	95	65.966	Amphiprion_percula
ENSCCAG00000036872	RBM38	78	93.617	ENSATEG00000016710	-	92	67.241	Anabas_testudineus
ENSCCAG00000036872	RBM38	81	84.848	ENSATEG00000016366	rbm38	94	60.268	Anabas_testudineus
ENSCCAG00000036872	RBM38	82	91.919	ENSACAG00000016238	RBM38	97	75.424	Anolis_carolinensis
ENSCCAG00000036872	RBM38	100	100.000	ENSANAG00000031959	RBM38	100	100.000	Aotus_nancymaae
ENSCCAG00000036872	RBM38	78	94.681	ENSACLG00000019514	-	92	67.672	Astatotilapia_calliptera
ENSCCAG00000036872	RBM38	82	91.089	ENSAMXG00000015601	-	95	67.826	Astyanax_mexicanus
ENSCCAG00000036872	RBM38	78	86.170	ENSAMXG00000038120	rbm38	76	65.405	Astyanax_mexicanus
ENSCCAG00000036872	RBM38	100	98.347	ENSBTAG00000008105	RBM38	100	95.397	Bos_taurus
ENSCCAG00000036872	RBM38	74	85.393	WBGene00006321	sup-12	59	85.393	Caenorhabditis_elegans
ENSCCAG00000036872	RBM38	100	100.000	ENSCJAG00000019139	RBM38	100	100.000	Callithrix_jacchus
ENSCCAG00000036872	RBM38	100	99.174	ENSCAFG00020021943	RBM38	100	95.816	Canis_lupus_dingo
ENSCCAG00000036872	RBM38	100	97.521	ENSCHIG00000002609	RBM38	100	93.724	Capra_hircus
ENSCCAG00000036872	RBM38	100	100.000	ENSCPOG00000012781	RBM38	100	95.397	Cavia_porcellus
ENSCCAG00000036872	RBM38	100	100.000	ENSCATG00000032133	RBM38	100	100.000	Cercocebus_atys
ENSCCAG00000036872	RBM38	93	100.000	ENSCLAG00000005906	RBM38	100	95.217	Chinchilla_lanigera
ENSCCAG00000036872	RBM38	100	100.000	ENSCSAG00000015503	RBM38	100	97.908	Chlorocebus_sabaeus
ENSCCAG00000036872	RBM38	81	94.898	ENSCPBG00000024059	RBM38	100	82.110	Chrysemys_picta_bellii
ENSCCAG00000036872	RBM38	80	84.536	ENSCING00000025102	-	86	56.039	Ciona_intestinalis
ENSCCAG00000036872	RBM38	80	84.536	ENSCSAVG00000001132	-	76	57.073	Ciona_savignyi
ENSCCAG00000036872	RBM38	99	80.833	ENSCANG00000030105	-	89	75.630	Colobus_angolensis_palliatus
ENSCCAG00000036872	RBM38	100	95.868	ENSCGRG00001012928	Rbm38	100	93.305	Cricetulus_griseus_chok1gshd
ENSCCAG00000036872	RBM38	78	93.617	ENSCSEG00000004701	-	93	72.727	Cynoglossus_semilaevis
ENSCCAG00000036872	RBM38	79	82.292	ENSCSEG00000020943	rbm38	60	61.413	Cynoglossus_semilaevis
ENSCCAG00000036872	RBM38	76	91.304	ENSCVAG00000015952	rbm38	91	59.227	Cyprinodon_variegatus
ENSCCAG00000036872	RBM38	78	95.745	ENSCVAG00000005472	-	92	67.660	Cyprinodon_variegatus
ENSCCAG00000036872	RBM38	78	92.553	ENSDARG00000058818	rbm38	92	63.677	Danio_rerio
ENSCCAG00000036872	RBM38	90	90.278	ENSDNOG00000032004	RBM38	100	90.278	Dasypus_novemcinctus
ENSCCAG00000036872	RBM38	88	85.047	ENSEBUG00000015164	rbm38	66	85.047	Eptatretus_burgeri
ENSCCAG00000036872	RBM38	100	98.347	ENSECAG00000007700	RBM38	100	94.979	Equus_caballus
ENSCCAG00000036872	RBM38	100	95.041	ENSEEUG00000013489	RBM38	100	93.333	Erinaceus_europaeus
ENSCCAG00000036872	RBM38	81	88.889	ENSELUG00000000585	-	87	65.672	Esox_lucius
ENSCCAG00000036872	RBM38	81	89.000	ENSELUG00000005849	-	95	67.089	Esox_lucius
ENSCCAG00000036872	RBM38	100	98.347	ENSFCAG00000042916	RBM38	100	98.347	Felis_catus
ENSCCAG00000036872	RBM38	85	93.204	ENSFALG00000010805	RBM38	93	84.358	Ficedula_albicollis
ENSCCAG00000036872	RBM38	77	91.398	ENSFHEG00000017748	rbm38	91	57.082	Fundulus_heteroclitus
ENSCCAG00000036872	RBM38	78	95.745	ENSFHEG00000006160	-	92	72.685	Fundulus_heteroclitus
ENSCCAG00000036872	RBM38	78	93.617	ENSGMOG00000016655	-	96	76.374	Gadus_morhua
ENSCCAG00000036872	RBM38	81	94.898	ENSGALG00000026081	RBM38	100	80.275	Gallus_gallus
ENSCCAG00000036872	RBM38	80	85.714	ENSGACG00000015224	rbm38	98	62.736	Gasterosteus_aculeatus
ENSCCAG00000036872	RBM38	81	88.000	ENSGACG00000009873	-	100	68.444	Gasterosteus_aculeatus
ENSCCAG00000036872	RBM38	81	94.898	ENSGAGG00000001187	RBM38	100	82.569	Gopherus_agassizii
ENSCCAG00000036872	RBM38	81	84.848	ENSHBUG00000012058	rbm38	98	58.506	Haplochromis_burtoni
ENSCCAG00000036872	RBM38	78	94.681	ENSHBUG00000011778	-	92	71.689	Haplochromis_burtoni
ENSCCAG00000036872	RBM38	100	98.347	ENSHGLG00000015077	RBM38	100	92.050	Heterocephalus_glaber_female
ENSCCAG00000036872	RBM38	74	85.556	ENSHCOG00000019040	rbm38	70	64.671	Hippocampus_comes
ENSCCAG00000036872	RBM38	82	89.109	ENSHCOG00000005622	-	54	73.958	Hippocampus_comes
ENSCCAG00000036872	RBM38	82	91.089	ENSIPUG00000019349	-	95	65.948	Ictalurus_punctatus
ENSCCAG00000036872	RBM38	79	97.222	ENSJJAG00000016299	-	90	97.222	Jaculus_jaculus
ENSCCAG00000036872	RBM38	74	86.517	ENSKMAG00000012402	rbm38	98	54.661	Kryptolebias_marmoratus
ENSCCAG00000036872	RBM38	78	93.617	ENSLBEG00000016163	RBM38	92	71.233	Labrus_bergylta
ENSCCAG00000036872	RBM38	81	85.859	ENSLBEG00000018878	rbm38	91	57.940	Labrus_bergylta
ENSCCAG00000036872	RBM38	82	91.000	ENSLOCG00000003456	rbm38	95	71.556	Lepisosteus_oculatus
ENSCCAG00000036872	RBM38	97	100.000	ENSMFAG00000043808	RBM38	97	100.000	Macaca_fascicularis
ENSCCAG00000036872	RBM38	100	100.000	ENSMMUG00000031391	RBM38	100	100.000	Macaca_mulatta
ENSCCAG00000036872	RBM38	100	100.000	ENSMNEG00000034683	RBM38	100	100.000	Macaca_nemestrina
ENSCCAG00000036872	RBM38	77	81.720	ENSMLEG00000043261	-	88	83.486	Mandrillus_leucophaeus
ENSCCAG00000036872	RBM38	81	84.848	ENSMAMG00000024135	rbm38	91	58.798	Mastacembelus_armatus
ENSCCAG00000036872	RBM38	82	90.099	ENSMAMG00000020499	RBM38	95	66.667	Mastacembelus_armatus
ENSCCAG00000036872	RBM38	81	84.848	ENSMZEG00005026036	rbm38	91	56.652	Maylandia_zebra
ENSCCAG00000036872	RBM38	78	94.681	ENSMZEG00005000849	-	92	71.689	Maylandia_zebra
ENSCCAG00000036872	RBM38	100	95.868	ENSMAUG00000021211	Rbm38	100	92.887	Mesocricetus_auratus
ENSCCAG00000036872	RBM38	90	97.222	ENSMICG00000038011	RBM38	100	97.222	Microcebus_murinus
ENSCCAG00000036872	RBM38	100	93.388	ENSMOCG00000008715	Rbm38	100	92.050	Microtus_ochrogaster
ENSCCAG00000036872	RBM38	96	82.759	ENSMMOG00000020051	-	99	67.500	Mola_mola
ENSCCAG00000036872	RBM38	100	88.430	ENSMODG00000016458	RBM38	100	80.083	Monodelphis_domestica
ENSCCAG00000036872	RBM38	82	90.099	ENSMALG00000004680	RBM38	70	75.132	Monopterus_albus
ENSCCAG00000036872	RBM38	81	81.633	ENSMALG00000022327	rbm38	93	56.195	Monopterus_albus
ENSCCAG00000036872	RBM38	100	94.215	MGP_CAROLIEiJ_G0024745	Rbm38	100	92.887	Mus_caroli
ENSCCAG00000036872	RBM38	100	94.215	ENSMUSG00000027510	Rbm38	100	93.305	Mus_musculus
ENSCCAG00000036872	RBM38	100	95.041	MGP_PahariEiJ_G0026186	Rbm38	100	93.305	Mus_pahari
ENSCCAG00000036872	RBM38	100	94.215	MGP_SPRETEiJ_G0025665	Rbm38	100	93.724	Mus_spretus
ENSCCAG00000036872	RBM38	81	98.980	ENSMPUG00000006518	RBM38	93	96.257	Mustela_putorius_furo
ENSCCAG00000036872	RBM38	90	90.741	ENSMLUG00000011140	RBM38	100	90.741	Myotis_lucifugus
ENSCCAG00000036872	RBM38	81	92.000	ENSNGAG00000014017	-	64	93.243	Nannospalax_galili
ENSCCAG00000036872	RBM38	92	79.130	ENSNBRG00000022685	rbm38	98	58.750	Neolamprologus_brichardi
ENSCCAG00000036872	RBM38	78	94.681	ENSNBRG00000022545	-	92	67.672	Neolamprologus_brichardi
ENSCCAG00000036872	RBM38	100	80.992	ENSMEUG00000005475	-	100	81.159	Notamacropus_eugenii
ENSCCAG00000036872	RBM38	100	100.000	ENSODEG00000007980	RBM38	100	96.234	Octodon_degus
ENSCCAG00000036872	RBM38	78	94.681	ENSONIG00000020324	-	92	67.532	Oreochromis_niloticus
ENSCCAG00000036872	RBM38	81	84.848	ENSONIG00000017073	rbm38	93	56.897	Oreochromis_niloticus
ENSCCAG00000036872	RBM38	88	90.566	ENSOANG00000009259	RBM38	90	77.119	Ornithorhynchus_anatinus
ENSCCAG00000036872	RBM38	78	93.617	ENSORLG00000027180	-	92	65.665	Oryzias_latipes
ENSCCAG00000036872	RBM38	78	87.368	ENSORLG00000012154	rbm38	91	54.701	Oryzias_latipes
ENSCCAG00000036872	RBM38	80	85.714	ENSORLG00020017871	rbm38	91	55.556	Oryzias_latipes_hni
ENSCCAG00000036872	RBM38	78	93.617	ENSORLG00020020751	-	95	63.306	Oryzias_latipes_hni
ENSCCAG00000036872	RBM38	78	93.617	ENSORLG00015017040	-	92	66.524	Oryzias_latipes_hsok
ENSCCAG00000036872	RBM38	94	78.947	ENSORLG00015012606	rbm38	97	57.021	Oryzias_latipes_hsok
ENSCCAG00000036872	RBM38	78	93.617	ENSOMEG00000023912	-	92	64.935	Oryzias_melastigma
ENSCCAG00000036872	RBM38	80	84.694	ENSOMEG00000006805	rbm38	91	55.128	Oryzias_melastigma
ENSCCAG00000036872	RBM38	100	99.180	ENSOGAG00000029136	RBM38	100	97.917	Otolemur_garnettii
ENSCCAG00000036872	RBM38	55	98.000	ENSPPAG00000040327	-	95	80.769	Pan_paniscus
ENSCCAG00000036872	RBM38	100	98.347	ENSPPRG00000009507	RBM38	100	98.347	Panthera_pardus
ENSCCAG00000036872	RBM38	100	99.174	ENSPTRG00000013661	RBM38	100	99.174	Pan_troglodytes
ENSCCAG00000036872	RBM38	81	100.000	ENSPTRG00000045845	-	70	96.875	Pan_troglodytes
ENSCCAG00000036872	RBM38	99	76.050	ENSPANG00000033127	-	100	76.050	Papio_anubis
ENSCCAG00000036872	RBM38	100	100.000	ENSPANG00000020919	-	100	100.000	Papio_anubis
ENSCCAG00000036872	RBM38	84	85.849	ENSPKIG00000025417	rbm38	98	63.115	Paramormyrops_kingsleyae
ENSCCAG00000036872	RBM38	83	92.079	ENSPKIG00000018122	-	100	88.889	Paramormyrops_kingsleyae
ENSCCAG00000036872	RBM38	86	92.308	ENSPSIG00000011649	RBM38	95	80.357	Pelodiscus_sinensis
ENSCCAG00000036872	RBM38	78	87.234	ENSPMGG00000017094	-	92	65.236	Periophthalmus_magnuspinnatus
ENSCCAG00000036872	RBM38	81	84.848	ENSPMGG00000011343	rbm38	94	57.563	Periophthalmus_magnuspinnatus
ENSCCAG00000036872	RBM38	100	88.430	ENSPCIG00000013648	RBM38	100	80.083	Phascolarctos_cinereus
ENSCCAG00000036872	RBM38	78	90.426	ENSPFOG00000011658	rbm38	91	57.692	Poecilia_formosa
ENSCCAG00000036872	RBM38	78	95.745	ENSPLAG00000002500	-	92	67.373	Poecilia_latipinna
ENSCCAG00000036872	RBM38	78	90.426	ENSPLAG00000005218	rbm38	91	57.692	Poecilia_latipinna
ENSCCAG00000036872	RBM38	78	90.426	ENSPMEG00000015770	rbm38	91	57.692	Poecilia_mexicana
ENSCCAG00000036872	RBM38	78	90.426	ENSPREG00000007398	rbm38	91	58.120	Poecilia_reticulata
ENSCCAG00000036872	RBM38	100	99.180	ENSPCOG00000026201	RBM38	100	99.180	Propithecus_coquereli
ENSCCAG00000036872	RBM38	80	97.260	ENSPVAG00000006457	RBM38	100	66.946	Pteropus_vampyrus
ENSCCAG00000036872	RBM38	81	93.939	ENSPNYG00000019727	-	100	90.598	Pundamilia_nyererei
ENSCCAG00000036872	RBM38	86	78.704	ENSPNYG00000021373	rbm38	98	58.159	Pundamilia_nyererei
ENSCCAG00000036872	RBM38	82	91.089	ENSPNAG00000015123	-	96	77.273	Pygocentrus_nattereri
ENSCCAG00000036872	RBM38	79	91.667	ENSPNAG00000010596	rbm38	88	64.789	Pygocentrus_nattereri
ENSCCAG00000036872	RBM38	100	95.041	ENSRNOG00000006420	Rbm38	100	92.887	Rattus_norvegicus
ENSCCAG00000036872	RBM38	100	88.430	ENSRROG00000036388	-	100	80.335	Rhinopithecus_roxellana
ENSCCAG00000036872	RBM38	90	99.074	ENSSBOG00000031053	RBM38	100	100.000	Saimiri_boliviensis_boliviensis
ENSCCAG00000036872	RBM38	78	93.617	ENSSFOG00015004453	rbm38	92	69.545	Scleropages_formosus
ENSCCAG00000036872	RBM38	78	93.617	ENSSDUG00000021082	RBM38	92	67.382	Seriola_dumerili
ENSCCAG00000036872	RBM38	81	85.859	ENSSDUG00000022611	rbm38	91	59.657	Seriola_dumerili
ENSCCAG00000036872	RBM38	81	85.859	ENSSLDG00000010845	rbm38	90	62.963	Seriola_lalandi_dorsalis
ENSCCAG00000036872	RBM38	78	93.617	ENSSLDG00000011778	RBM38	92	67.382	Seriola_lalandi_dorsalis
ENSCCAG00000036872	RBM38	81	85.859	ENSSPAG00000011113	rbm38	91	58.369	Stegastes_partitus
ENSCCAG00000036872	RBM38	78	93.617	ENSSPAG00000020989	RBM38	91	70.698	Stegastes_partitus
ENSCCAG00000036872	RBM38	100	99.174	ENSSSCG00000007504	RBM38	100	96.234	Sus_scrofa
ENSCCAG00000036872	RBM38	78	88.298	ENSTRUG00000024954	rbm38	91	55.895	Takifugu_rubripes
ENSCCAG00000036872	RBM38	78	93.617	ENSTRUG00000019869	-	92	69.099	Takifugu_rubripes
ENSCCAG00000036872	RBM38	78	94.681	ENSTNIG00000007093	-	97	71.622	Tetraodon_nigroviridis
ENSCCAG00000036872	RBM38	98	89.916	ENSTBEG00000001689	-	64	89.916	Tupaia_belangeri
ENSCCAG00000036872	RBM38	100	99.174	ENSUAMG00000019780	RBM38	100	96.234	Ursus_americanus
ENSCCAG00000036872	RBM38	100	99.174	ENSVVUG00000017246	RBM38	100	95.816	Vulpes_vulpes
ENSCCAG00000036872	RBM38	83	90.099	ENSXETG00000011268	rbm38	100	76.000	Xenopus_tropicalis
ENSCCAG00000036872	RBM38	78	95.745	ENSXCOG00000017324	-	60	79.699	Xiphophorus_couchianus
ENSCCAG00000036872	RBM38	77	91.398	ENSXMAG00000023662	rbm38	91	57.940	Xiphophorus_maculatus