EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00000005111 (Gene tree)
Gene ID: -
Gene Symbol: Smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Plus strand
Length: 23187 bases
Position: chrJH000344.1:1188313-1211499
Accession: 100762914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000007031	EST1	PF10374.9	7.1e-24	1	1
ENSCGRP00000007030	EST1	PF10374.9	7.2e-24	1	1
ENSCGRP00000007031	EST1_DNA_bind	PF10373.9	4e-40	1	2
ENSCGRP00000007031	EST1_DNA_bind	PF10373.9	4e-40	2	2
ENSCGRP00000007030	EST1_DNA_bind	PF10373.9	4.1e-40	1	2
ENSCGRP00000007030	EST1_DNA_bind	PF10373.9	4.1e-40	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000007144	-	3015	-	ENSCGRP00000007030	1004 (aa)	-	-
ENSCGRT00000007145	-	4258	XM_016973141	ENSCGRP00000007031	992 (aa)	XP_016828630	-

Gene Model

Click here to download ENSCGRG00000005111's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000005111's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000005111	Smg5	100	92.548	ENSG00000198952	SMG5	98	92.857	Homo_sapiens
ENSCGRG00000005111	Smg5	100	67.233	ENSAPOG00000019690	smg5	98	67.470	Acanthochromis_polyacanthus
ENSCGRG00000005111	Smg5	100	88.833	ENSAMEG00000014458	SMG5	100	89.045	Ailuropoda_melanoleuca
ENSCGRG00000005111	Smg5	100	64.798	ENSACIG00000001353	smg5	98	65.463	Amphilophus_citrinellus
ENSCGRG00000005111	Smg5	100	64.851	ENSAOCG00000019483	smg5	93	66.632	Amphiprion_ocellaris
ENSCGRG00000005111	Smg5	100	66.401	ENSAPEG00000022949	smg5	91	77.363	Amphiprion_percula
ENSCGRG00000005111	Smg5	100	65.517	ENSATEG00000005348	smg5	98	65.909	Anabas_testudineus
ENSCGRG00000005111	Smg5	100	77.973	ENSAPLG00000010263	SMG5	100	77.410	Anas_platyrhynchos
ENSCGRG00000005111	Smg5	100	92.246	ENSANAG00000032899	SMG5	99	92.548	Aotus_nancymaae
ENSCGRG00000005111	Smg5	100	64.602	ENSACLG00000009311	smg5	98	66.372	Astatotilapia_calliptera
ENSCGRG00000005111	Smg5	100	91.339	ENSBTAG00000009435	SMG5	98	91.851	Bos_taurus
ENSCGRG00000005111	Smg5	99	43.707	ENSBTAG00000021747	-	97	43.211	Bos_taurus
ENSCGRG00000005111	Smg5	100	92.145	ENSCJAG00000005684	SMG5	98	92.455	Callithrix_jacchus
ENSCGRG00000005111	Smg5	100	90.323	ENSCAFG00000016839	SMG5	98	90.735	Canis_familiaris
ENSCGRG00000005111	Smg5	100	90.323	ENSCAFG00020006061	SMG5	98	90.735	Canis_lupus_dingo
ENSCGRG00000005111	Smg5	100	91.440	ENSCHIG00000007709	SMG5	98	91.952	Capra_hircus
ENSCGRG00000005111	Smg5	99	43.849	ENSCHIG00000006323	-	98	43.254	Capra_hircus
ENSCGRG00000005111	Smg5	100	91.247	ENSTSYG00000004099	SMG5	98	91.457	Carlito_syrichta
ENSCGRG00000005111	Smg5	99	71.704	ENSCAPG00000003631	SMG5	100	72.690	Cavia_aperea
ENSCGRG00000005111	Smg5	100	92.145	ENSCPOG00000015696	SMG5	98	92.153	Cavia_porcellus
ENSCGRG00000005111	Smg5	100	91.843	ENSCCAG00000027409	SMG5	99	92.145	Cebus_capucinus
ENSCGRG00000005111	Smg5	100	92.749	ENSCATG00000030539	SMG5	98	93.159	Cercocebus_atys
ENSCGRG00000005111	Smg5	100	92.649	ENSCLAG00000003983	SMG5	98	92.656	Chinchilla_lanigera
ENSCGRG00000005111	Smg5	100	92.649	ENSCSAG00000002120	SMG5	98	93.058	Chlorocebus_sabaeus
ENSCGRG00000005111	Smg5	56	90.511	ENSCHOG00000008741	-	57	90.511	Choloepus_hoffmanni
ENSCGRG00000005111	Smg5	96	77.282	ENSCPBG00000025848	SMG5	100	77.665	Chrysemys_picta_bellii
ENSCGRG00000005111	Smg5	94	34.511	ENSCING00000008706	-	97	34.751	Ciona_intestinalis
ENSCGRG00000005111	Smg5	100	88.721	ENSCANG00000029208	SMG5	98	88.431	Colobus_angolensis_palliatus
ENSCGRG00000005111	Smg5	100	100.000	ENSCGRG00001006336	Smg5	98	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000005111	Smg5	100	64.343	ENSCSEG00000014220	smg5	98	65.569	Cynoglossus_semilaevis
ENSCGRG00000005111	Smg5	100	60.518	ENSCVAG00000000529	smg5	97	60.835	Cyprinodon_variegatus
ENSCGRG00000005111	Smg5	100	87.815	ENSDNOG00000000051	SMG5	98	88.028	Dasypus_novemcinctus
ENSCGRG00000005111	Smg5	95	36.518	ENSDNOG00000039862	-	100	35.881	Dasypus_novemcinctus
ENSCGRG00000005111	Smg5	100	91.541	ENSDORG00000010382	Smg5	98	91.147	Dipodomys_ordii
ENSCGRG00000005111	Smg5	76	33.962	FBgn0019890	Smg5	62	33.962	Drosophila_melanogaster
ENSCGRG00000005111	Smg5	82	93.204	ENSETEG00000010336	SMG5	88	93.204	Echinops_telfairi
ENSCGRG00000005111	Smg5	93	47.826	ENSEBUG00000003739	smg5	98	47.987	Eptatretus_burgeri
ENSCGRG00000005111	Smg5	100	92.246	ENSEASG00005019122	SMG5	98	92.153	Equus_asinus_asinus
ENSCGRG00000005111	Smg5	100	92.246	ENSECAG00000001389	SMG5	98	92.153	Equus_caballus
ENSCGRG00000005111	Smg5	74	96.542	ENSEEUG00000012690	SMG5	73	96.542	Erinaceus_europaeus
ENSCGRG00000005111	Smg5	100	64.862	ENSELUG00000012585	smg5	98	64.503	Esox_lucius
ENSCGRG00000005111	Smg5	100	89.527	ENSFCAG00000011783	SMG5	98	90.141	Felis_catus
ENSCGRG00000005111	Smg5	59	81.063	ENSFALG00000001166	-	99	80.399	Ficedula_albicollis
ENSCGRG00000005111	Smg5	100	90.332	ENSFDAG00000017388	SMG5	100	90.131	Fukomys_damarensis
ENSCGRG00000005111	Smg5	99	62.500	ENSFHEG00000013939	smg5	95	68.690	Fundulus_heteroclitus
ENSCGRG00000005111	Smg5	100	77.246	ENSGALG00000029918	-	98	76.923	Gallus_gallus
ENSCGRG00000005111	Smg5	72	76.413	ENSGAFG00000021691	smg5	95	68.051	Gambusia_affinis
ENSCGRG00000005111	Smg5	100	78.523	ENSGAGG00000016131	SMG5	98	78.773	Gopherus_agassizii
ENSCGRG00000005111	Smg5	100	92.246	ENSGGOG00000010932	SMG5	98	92.555	Gorilla_gorilla
ENSCGRG00000005111	Smg5	100	65.456	ENSHBUG00000008654	smg5	98	65.366	Haplochromis_burtoni
ENSCGRG00000005111	Smg5	100	89.627	ENSHGLG00000019152	SMG5	98	89.638	Heterocephalus_glaber_female
ENSCGRG00000005111	Smg5	90	89.485	ENSHGLG00100015948	SMG5	97	89.497	Heterocephalus_glaber_male
ENSCGRG00000005111	Smg5	87	73.990	ENSHCOG00000010229	smg5	91	73.804	Hippocampus_comes
ENSCGRG00000005111	Smg5	100	62.396	ENSIPUG00000006624	Smg5	98	62.430	Ictalurus_punctatus
ENSCGRG00000005111	Smg5	100	92.850	ENSSTOG00000001780	SMG5	98	93.159	Ictidomys_tridecemlineatus
ENSCGRG00000005111	Smg5	100	92.462	ENSJJAG00000022763	Smg5	98	92.671	Jaculus_jaculus
ENSCGRG00000005111	Smg5	100	64.971	ENSLBEG00000002145	smg5	98	66.143	Labrus_bergylta
ENSCGRG00000005111	Smg5	99	64.862	ENSLACG00000010521	SMG5	97	64.735	Latimeria_chalumnae
ENSCGRG00000005111	Smg5	100	91.239	ENSLAFG00000006241	SMG5	98	90.937	Loxodonta_africana
ENSCGRG00000005111	Smg5	100	92.649	ENSMFAG00000045357	SMG5	98	93.058	Macaca_fascicularis
ENSCGRG00000005111	Smg5	100	92.649	ENSMMUG00000000090	SMG5	98	93.058	Macaca_mulatta
ENSCGRG00000005111	Smg5	100	92.548	ENSMNEG00000044425	SMG5	98	92.958	Macaca_nemestrina
ENSCGRG00000005111	Smg5	100	86.158	ENSMLEG00000041192	SMG5	98	86.172	Mandrillus_leucophaeus
ENSCGRG00000005111	Smg5	100	60.965	ENSMAMG00000010683	smg5	100	60.681	Mastacembelus_armatus
ENSCGRG00000005111	Smg5	100	63.734	ENSMZEG00005015815	smg5	98	64.160	Maylandia_zebra
ENSCGRG00000005111	Smg5	64	58.511	ENSMZEG00005016543	smg5	100	60.152	Maylandia_zebra
ENSCGRG00000005111	Smg5	56	44.154	ENSMAUG00000000043	-	96	46.441	Mesocricetus_auratus
ENSCGRG00000005111	Smg5	100	97.883	ENSMAUG00000010381	Smg5	98	97.885	Mesocricetus_auratus
ENSCGRG00000005111	Smg5	100	92.749	ENSMICG00000002257	SMG5	98	93.058	Microcebus_murinus
ENSCGRG00000005111	Smg5	100	97.485	ENSMOCG00000016590	Smg5	98	97.487	Microtus_ochrogaster
ENSCGRG00000005111	Smg5	100	58.288	ENSMMOG00000017199	smg5	98	59.799	Mola_mola
ENSCGRG00000005111	Smg5	76	40.909	ENSMODG00000004735	-	86	40.909	Monodelphis_domestica
ENSCGRG00000005111	Smg5	94	39.024	ENSMODG00000004532	-	81	38.933	Monodelphis_domestica
ENSCGRG00000005111	Smg5	82	38.571	ENSMODG00000010675	-	84	38.992	Monodelphis_domestica
ENSCGRG00000005111	Smg5	99	35.108	ENSMODG00000004511	-	99	34.650	Monodelphis_domestica
ENSCGRG00000005111	Smg5	87	87.384	ENSMODG00000016901	SMG5	96	87.052	Monodelphis_domestica
ENSCGRG00000005111	Smg5	100	60.291	ENSMALG00000010375	smg5	98	60.727	Monopterus_albus
ENSCGRG00000005111	Smg5	100	97.581	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCGRG00000005111	Smg5	100	97.782	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCGRG00000005111	Smg5	100	97.384	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCGRG00000005111	Smg5	100	97.782	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCGRG00000005111	Smg5	96	88.328	ENSMPUG00000004546	SMG5	100	88.749	Mustela_putorius_furo
ENSCGRG00000005111	Smg5	100	91.667	ENSMLUG00000008518	SMG5	98	91.775	Myotis_lucifugus
ENSCGRG00000005111	Smg5	100	93.756	ENSNGAG00000020706	Smg5	98	93.964	Nannospalax_galili
ENSCGRG00000005111	Smg5	99	44.020	ENSNGAG00000012101	-	97	44.235	Nannospalax_galili
ENSCGRG00000005111	Smg5	97	62.898	ENSNBRG00000004332	smg5	96	63.487	Neolamprologus_brichardi
ENSCGRG00000005111	Smg5	100	92.044	ENSNLEG00000012439	SMG5	98	92.354	Nomascus_leucogenys
ENSCGRG00000005111	Smg5	100	85.297	ENSMEUG00000012834	SMG5	98	85.010	Notamacropus_eugenii
ENSCGRG00000005111	Smg5	100	90.634	ENSOPRG00000009152	SMG5	98	90.744	Ochotona_princeps
ENSCGRG00000005111	Smg5	100	91.641	ENSODEG00000012237	SMG5	98	91.650	Octodon_degus
ENSCGRG00000005111	Smg5	90	40.576	ENSOCUG00000023338	-	97	40.355	Oryctolagus_cuniculus
ENSCGRG00000005111	Smg5	100	91.944	ENSOCUG00000012886	SMG5	100	92.153	Oryctolagus_cuniculus
ENSCGRG00000005111	Smg5	100	60.000	ENSORLG00000016239	smg5	98	61.426	Oryzias_latipes
ENSCGRG00000005111	Smg5	100	63.654	ENSORLG00020013127	smg5	98	64.870	Oryzias_latipes_hni
ENSCGRG00000005111	Smg5	100	63.762	ENSORLG00015019014	smg5	98	65.672	Oryzias_latipes_hsok
ENSCGRG00000005111	Smg5	82	58.206	ENSOMEG00000021330	smg5	90	60.022	Oryzias_melastigma
ENSCGRG00000005111	Smg5	100	90.937	ENSOGAG00000004966	SMG5	98	91.247	Otolemur_garnettii
ENSCGRG00000005111	Smg5	99	43.552	ENSOARG00000011963	-	98	43.267	Ovis_aries
ENSCGRG00000005111	Smg5	100	91.339	ENSOARG00000005778	SMG5	98	91.851	Ovis_aries
ENSCGRG00000005111	Smg5	100	92.246	ENSPPAG00000011996	SMG5	98	92.555	Pan_paniscus
ENSCGRG00000005111	Smg5	100	89.527	ENSPPRG00000011901	SMG5	100	90.131	Panthera_pardus
ENSCGRG00000005111	Smg5	99	82.977	ENSPTIG00000007892	SMG5	96	84.145	Panthera_tigris_altaica
ENSCGRG00000005111	Smg5	100	92.447	ENSPTRG00000023925	SMG5	98	92.757	Pan_troglodytes
ENSCGRG00000005111	Smg5	100	92.447	ENSPTRG00000049282	-	98	92.757	Pan_troglodytes
ENSCGRG00000005111	Smg5	100	92.749	ENSPANG00000011201	SMG5	98	93.159	Papio_anubis
ENSCGRG00000005111	Smg5	100	65.415	ENSPKIG00000009402	smg5	98	66.368	Paramormyrops_kingsleyae
ENSCGRG00000005111	Smg5	100	79.146	ENSPSIG00000015198	SMG5	100	79.365	Pelodiscus_sinensis
ENSCGRG00000005111	Smg5	99	61.272	ENSPMGG00000010465	smg5	98	59.352	Periophthalmus_magnuspinnatus
ENSCGRG00000005111	Smg5	100	98.690	ENSPEMG00000001819	Smg5	98	98.691	Peromyscus_maniculatus_bairdii
ENSCGRG00000005111	Smg5	57	45.775	ENSPEMG00000010022	-	94	44.894	Peromyscus_maniculatus_bairdii
ENSCGRG00000005111	Smg5	100	50.438	ENSPMAG00000000410	smg5	98	50.532	Petromyzon_marinus
ENSCGRG00000005111	Smg5	100	86.720	ENSPCIG00000018938	SMG5	98	86.432	Phascolarctos_cinereus
ENSCGRG00000005111	Smg5	100	65.815	ENSPMEG00000014105	smg5	98	65.882	Poecilia_mexicana
ENSCGRG00000005111	Smg5	93	69.007	ENSPREG00000017713	smg5	98	62.249	Poecilia_reticulata
ENSCGRG00000005111	Smg5	100	92.447	ENSPPYG00000000723	SMG5	98	92.757	Pongo_abelii
ENSCGRG00000005111	Smg5	71	99.441	ENSPCAG00000008412	SMG5	75	99.441	Procavia_capensis
ENSCGRG00000005111	Smg5	100	92.447	ENSPCOG00000004741	SMG5	98	92.757	Propithecus_coquereli
ENSCGRG00000005111	Smg5	100	82.157	ENSPVAG00000016748	SMG5	98	82.495	Pteropus_vampyrus
ENSCGRG00000005111	Smg5	100	60.253	ENSPNYG00000013397	smg5	98	60.650	Pundamilia_nyererei
ENSCGRG00000005111	Smg5	100	61.909	ENSPNAG00000028363	smg5	98	62.477	Pygocentrus_nattereri
ENSCGRG00000005111	Smg5	100	97.883	ENSRNOG00000019590	Smg5	98	97.885	Rattus_norvegicus
ENSCGRG00000005111	Smg5	100	92.447	ENSRBIG00000027428	SMG5	98	92.857	Rhinopithecus_bieti
ENSCGRG00000005111	Smg5	100	92.346	ENSRROG00000030035	SMG5	98	92.757	Rhinopithecus_roxellana
ENSCGRG00000005111	Smg5	100	92.044	ENSSBOG00000033339	SMG5	98	92.354	Saimiri_boliviensis_boliviensis
ENSCGRG00000005111	Smg5	100	86.286	ENSSHAG00000014163	SMG5	100	86.000	Sarcophilus_harrisii
ENSCGRG00000005111	Smg5	65	40.351	ENSSHAG00000000935	-	80	40.854	Sarcophilus_harrisii
ENSCGRG00000005111	Smg5	86	39.793	ENSSHAG00000000561	-	85	40.157	Sarcophilus_harrisii
ENSCGRG00000005111	Smg5	99	33.598	ENSSHAG00000009572	-	76	44.118	Sarcophilus_harrisii
ENSCGRG00000005111	Smg5	100	65.842	ENSSFOG00015024175	smg5	98	65.354	Scleropages_formosus
ENSCGRG00000005111	Smg5	100	60.417	ENSSMAG00000013059	smg5	98	61.754	Scophthalmus_maximus
ENSCGRG00000005111	Smg5	100	59.286	ENSSDUG00000007122	smg5	98	61.226	Seriola_dumerili
ENSCGRG00000005111	Smg5	100	59.892	ENSSLDG00000011418	smg5	98	61.538	Seriola_lalandi_dorsalis
ENSCGRG00000005111	Smg5	90	77.293	ENSSARG00000012484	SMG5	97	76.760	Sorex_araneus
ENSCGRG00000005111	Smg5	96	77.048	ENSSPUG00000002260	SMG5	100	76.744	Sphenodon_punctatus
ENSCGRG00000005111	Smg5	91	76.296	ENSSPAG00000014266	smg5	98	65.500	Stegastes_partitus
ENSCGRG00000005111	Smg5	100	71.472	ENSSSCG00000039308	-	97	71.573	Sus_scrofa
ENSCGRG00000005111	Smg5	100	92.649	ENSSSCG00000006490	-	100	92.962	Sus_scrofa
ENSCGRG00000005111	Smg5	100	79.300	ENSTGUG00000003748	-	98	79.520	Taeniopygia_guttata
ENSCGRG00000005111	Smg5	100	64.793	ENSTRUG00000012580	smg5	98	64.961	Takifugu_rubripes
ENSCGRG00000005111	Smg5	100	64.921	ENSTNIG00000010303	smg5	98	65.089	Tetraodon_nigroviridis
ENSCGRG00000005111	Smg5	59	99.507	ENSTBEG00000002777	SMG5	57	99.507	Tupaia_belangeri
ENSCGRG00000005111	Smg5	97	90.625	ENSTTRG00000001401	SMG5	94	89.792	Tursiops_truncatus
ENSCGRG00000005111	Smg5	100	89.325	ENSUAMG00000013721	SMG5	98	89.829	Ursus_americanus
ENSCGRG00000005111	Smg5	100	85.025	ENSUMAG00000018041	SMG5	98	85.300	Ursus_maritimus
ENSCGRG00000005111	Smg5	100	82.075	ENSVPAG00000009446	SMG5	99	82.075	Vicugna_pacos
ENSCGRG00000005111	Smg5	100	90.735	ENSVVUG00000005887	SMG5	98	90.634	Vulpes_vulpes
ENSCGRG00000005111	Smg5	79	65.031	ENSXETG00000033791	SMG5	99	64.654	Xenopus_tropicalis
ENSCGRG00000005111	Smg5	60	74.762	ENSXCOG00000004379	smg5	94	70.330	Xiphophorus_couchianus
ENSCGRG00000005111	Smg5	100	65.675	ENSXMAG00000013499	smg5	98	66.073	Xiphophorus_maculatus