EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000005621 (Gene tree)
Gene ID: -
Gene Symbol: Apobec3
Alias: CEM15|Gm20117|Rfv-3|Rfv3
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3B
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 17756 bases
Position: chrJH001135.1:263962-281717
Accession: 100772476
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000007722	APOBEC_N	PF08210.11	6e-93	1	2
ENSCGRP00000007722	APOBEC_N	PF08210.11	6e-93	2	2
ENSCGRP00000007721	APOBEC_N	PF08210.11	4e-83	1	2
ENSCGRP00000007721	APOBEC_N	PF08210.11	4e-83	2	2
ENSCGRP00000007721	APOBEC_C	PF05240.14	3.5e-59	1	2
ENSCGRP00000007721	APOBEC_C	PF05240.14	3.5e-59	2	2
ENSCGRP00000007722	APOBEC_C	PF05240.14	4.3e-59	1	2
ENSCGRP00000007722	APOBEC_C	PF05240.14	4.3e-59	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000007847	-	2925	XM_003509461	ENSCGRP00000007722	413 (aa)	XP_003509509	G3I2J2
ENSCGRT00000007846	-	2829	XM_007650054	ENSCGRP00000007721	381 (aa)	XP_007648244	UPI000454B69A

Gene Model

Click here to download ENSCGRG00000005621's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000005621's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000005621	Apobec3	83	36.723	ENSCGRG00000007835	Apobec2	78	37.226
ENSCGRG00000005621	Apobec3	89	40.556	ENSCGRG00000013829	Aicda	97	45.045
ENSCGRG00000005621	Apobec3	60	37.615	ENSCGRG00000008644	Apobec1	61	37.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000005621	Apobec3	84	49.462	ENSG00000100298	APOBEC3H	100	49.462	Homo_sapiens
ENSCGRG00000005621	Apobec3	92	41.686	ENSAMEG00000010818	-	98	42.632	Ailuropoda_melanoleuca
ENSCGRG00000005621	Apobec3	90	53.140	ENSANAG00000025410	APOBEC3H	94	53.589	Aotus_nancymaae
ENSCGRG00000005621	Apobec3	90	52.198	ENSBTAG00000007755	APOBEC3H	94	52.198	Bos_taurus
ENSCGRG00000005621	Apobec3	83	48.649	ENSCJAG00000012524	APOBEC3H	91	50.000	Callithrix_jacchus
ENSCGRG00000005621	Apobec3	91	49.485	ENSCAFG00000001361	APOBEC3Z3	98	49.485	Canis_familiaris
ENSCGRG00000005621	Apobec3	83	50.000	ENSCAFG00020002584	-	92	50.000	Canis_lupus_dingo
ENSCGRG00000005621	Apobec3	85	50.802	ENSCHIG00000026580	-	99	46.667	Capra_hircus
ENSCGRG00000005621	Apobec3	82	51.705	ENSTSYG00000032894	-	100	51.705	Carlito_syrichta
ENSCGRG00000005621	Apobec3	97	49.633	ENSCPOG00000009257	-	96	49.633	Cavia_porcellus
ENSCGRG00000005621	Apobec3	93	51.244	ENSCCAG00000008525	APOBEC3H	95	51.724	Cebus_capucinus
ENSCGRG00000005621	Apobec3	83	53.514	ENSCATG00000030302	APOBEC3H	100	53.514	Cercocebus_atys
ENSCGRG00000005621	Apobec3	90	53.030	ENSCLAG00000016615	-	96	53.030	Chinchilla_lanigera
ENSCGRG00000005621	Apobec3	87	53.431	ENSCSAG00000006371	APOBEC3H	95	53.431	Chlorocebus_sabaeus
ENSCGRG00000005621	Apobec3	100	100.000	ENSCGRG00001022976	Apobec3	100	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000005621	Apobec3	94	53.401	ENSDORG00000027271	-	100	57.143	Dipodomys_ordii
ENSCGRG00000005621	Apobec3	99	50.495	ENSECAG00000007726	APOBEC3H	98	50.495	Equus_caballus
ENSCGRG00000005621	Apobec3	88	53.846	ENSFCAG00000005251	APOBEC3Z3	98	53.846	Felis_catus
ENSCGRG00000005621	Apobec3	87	52.198	ENSSTOG00000007125	-	88	52.198	Ictidomys_tridecemlineatus
ENSCGRG00000005621	Apobec3	99	50.971	ENSJJAG00000016840	-	99	50.971	Jaculus_jaculus
ENSCGRG00000005621	Apobec3	89	44.624	ENSLAFG00000027404	-	98	44.624	Loxodonta_africana
ENSCGRG00000005621	Apobec3	92	53.922	ENSMFAG00000031827	APOBEC3H	95	53.922	Macaca_fascicularis
ENSCGRG00000005621	Apobec3	92	53.431	ENSMMUG00000001016	APOBEC3H	95	53.431	Macaca_mulatta
ENSCGRG00000005621	Apobec3	92	53.922	ENSMNEG00000039259	APOBEC3H	95	53.922	Macaca_nemestrina
ENSCGRG00000005621	Apobec3	88	53.431	ENSMLEG00000033417	APOBEC3H	95	53.431	Mandrillus_leucophaeus
ENSCGRG00000005621	Apobec3	100	89.130	ENSMAUG00000011683	Apobec3	100	89.130	Mesocricetus_auratus
ENSCGRG00000005621	Apobec3	100	74.941	ENSMOCG00000021576	Apobec3	100	75.878	Microtus_ochrogaster
ENSCGRG00000005621	Apobec3	100	65.865	MGP_CAROLIEiJ_G0020029	Apobec3	100	68.000	Mus_caroli
ENSCGRG00000005621	Apobec3	100	66.908	ENSMUSG00000009585	Apobec3	100	68.000	Mus_musculus
ENSCGRG00000005621	Apobec3	100	67.952	MGP_PahariEiJ_G0020031	-	100	67.952	Mus_pahari
ENSCGRG00000005621	Apobec3	100	67.633	MGP_SPRETEiJ_G0020927	Apobec3	100	67.633	Mus_spretus
ENSCGRG00000005621	Apobec3	88	49.326	ENSMPUG00000013239	-	98	49.326	Mustela_putorius_furo
ENSCGRG00000005621	Apobec3	99	62.295	ENSNGAG00000018998	Apobec3	99	65.436	Nannospalax_galili
ENSCGRG00000005621	Apobec3	93	52.451	ENSNLEG00000015218	-	95	52.451	Nomascus_leucogenys
ENSCGRG00000005621	Apobec3	97	43.812	ENSOCUG00000023913	-	100	43.812	Oryctolagus_cuniculus
ENSCGRG00000005621	Apobec3	88	47.027	ENSOARG00000016290	APOBEC3F	98	47.027	Ovis_aries
ENSCGRG00000005621	Apobec3	84	50.538	ENSPPAG00000036522	APOBEC3H	100	50.538	Pan_paniscus
ENSCGRG00000005621	Apobec3	89	45.641	ENSPPRG00000003675	-	96	50.781	Panthera_pardus
ENSCGRG00000005621	Apobec3	88	55.385	ENSPPRG00000003941	-	98	55.385	Panthera_pardus
ENSCGRG00000005621	Apobec3	88	55.385	ENSPTIG00000010283	-	98	55.385	Panthera_tigris_altaica
ENSCGRG00000005621	Apobec3	84	50.538	ENSPTRG00000014390	APOBEC3H	100	50.538	Pan_troglodytes
ENSCGRG00000005621	Apobec3	92	53.431	ENSPANG00000010774	APOBEC3H	95	53.431	Papio_anubis
ENSCGRG00000005621	Apobec3	99	74.318	ENSPEMG00000000456	Apobec3	99	74.318	Peromyscus_maniculatus_bairdii
ENSCGRG00000005621	Apobec3	93	52.217	ENSPPYG00000011834	-	95	52.217	Pongo_abelii
ENSCGRG00000005621	Apobec3	79	40.625	ENSPCAG00000015655	-	99	40.625	Procavia_capensis
ENSCGRG00000005621	Apobec3	65	48.438	ENSPVAG00000024267	-	95	48.438	Pteropus_vampyrus
ENSCGRG00000005621	Apobec3	86	51.685	ENSPVAG00000009462	-	100	51.685	Pteropus_vampyrus
ENSCGRG00000005621	Apobec3	65	48.438	ENSPVAG00000024161	-	95	48.438	Pteropus_vampyrus
ENSCGRG00000005621	Apobec3	96	71.859	ENSRNOG00000016852	Apobec3	100	71.859	Rattus_norvegicus
ENSCGRG00000005621	Apobec3	92	51.724	ENSRBIG00000029088	APOBEC3H	95	51.724	Rhinopithecus_bieti
ENSCGRG00000005621	Apobec3	93	52.217	ENSRROG00000024699	APOBEC3H	95	52.217	Rhinopithecus_roxellana
ENSCGRG00000005621	Apobec3	90	51.232	ENSSBOG00000030005	APOBEC3H	100	55.634	Saimiri_boliviensis_boliviensis
ENSCGRG00000005621	Apobec3	99	47.761	ENSSSCG00000000091	APOBEC3B	98	45.368	Sus_scrofa
ENSCGRG00000005621	Apobec3	79	51.744	ENSTBEG00000001532	-	99	51.744	Tupaia_belangeri
ENSCGRG00000005621	Apobec3	78	49.444	ENSTTRG00000001266	-	99	49.444	Tursiops_truncatus
ENSCGRG00000005621	Apobec3	88	52.284	ENSUAMG00000004427	-	86	52.284	Ursus_americanus
ENSCGRG00000005621	Apobec3	91	53.846	ENSUMAG00000014435	-	98	53.846	Ursus_maritimus
ENSCGRG00000005621	Apobec3	65	48.800	ENSVPAG00000011108	-	99	48.800	Vicugna_pacos