EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCGRG00000006554 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 9958 bases
Position: chrJH000106.1:1817964-1827921
Accession: 100771944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000008965	LSM	PF01423.22	1.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000009113	-	1235	XM_003498223	ENSCGRP00000008965	133 (aa)	XP_003498271	G3H1I6
ENSCGRT00000009114	-	66	-	ENSCGRP00000008966	22 (aa)	-	-

Gene Model

Click here to download ENSCGRG00000006554's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000006554's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCGRG00000006554	-	80	82.883	ENSCGRG00000013603	-	97	82.883
ENSCGRG00000006554	-	56	36.000	ENSCGRG00000005587	Lsm8	88	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000006554	-	100	99.248	ENSG00000175324	LSM1	100	99.248	Homo_sapiens
ENSCGRG00000006554	-	100	84.962	ENSAPOG00000010833	lsm1	100	84.962	Acanthochromis_polyacanthus
ENSCGRG00000006554	-	100	99.248	ENSAMEG00000011141	LSM1	100	99.248	Ailuropoda_melanoleuca
ENSCGRG00000006554	-	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSCGRG00000006554	-	100	84.962	ENSAOCG00000017096	lsm1	100	84.962	Amphiprion_ocellaris
ENSCGRG00000006554	-	100	84.962	ENSAOCG00000017997	-	100	84.962	Amphiprion_ocellaris
ENSCGRG00000006554	-	100	84.962	ENSAPEG00000011669	lsm1	100	84.962	Amphiprion_percula
ENSCGRG00000006554	-	100	83.459	ENSATEG00000022266	lsm1	100	83.459	Anabas_testudineus
ENSCGRG00000006554	-	100	99.248	ENSANAG00000027785	LSM1	100	99.248	Aotus_nancymaae
ENSCGRG00000006554	-	100	83.459	ENSACLG00000011400	lsm1	100	83.459	Astatotilapia_calliptera
ENSCGRG00000006554	-	100	85.714	ENSAMXG00000005441	lsm1	100	85.714	Astyanax_mexicanus
ENSCGRG00000006554	-	100	98.496	ENSBTAG00000001612	LSM1	100	98.496	Bos_taurus
ENSCGRG00000006554	-	70	58.065	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSCGRG00000006554	-	100	98.496	ENSCJAG00000048015	LSM1	100	98.496	Callithrix_jacchus
ENSCGRG00000006554	-	100	99.248	ENSCAFG00000006113	LSM1	100	99.248	Canis_familiaris
ENSCGRG00000006554	-	100	99.248	ENSCAFG00020001822	LSM1	100	99.248	Canis_lupus_dingo
ENSCGRG00000006554	-	100	99.248	ENSCHIG00000013194	LSM1	100	99.248	Capra_hircus
ENSCGRG00000006554	-	100	99.248	ENSTSYG00000010394	LSM1	100	99.248	Carlito_syrichta
ENSCGRG00000006554	-	100	99.248	ENSCPOG00000032671	LSM1	100	99.248	Cavia_porcellus
ENSCGRG00000006554	-	100	99.248	ENSCCAG00000037171	LSM1	100	99.248	Cebus_capucinus
ENSCGRG00000006554	-	100	99.248	ENSCATG00000020377	LSM1	100	99.248	Cercocebus_atys
ENSCGRG00000006554	-	100	99.248	ENSCLAG00000001137	LSM1	100	99.248	Chinchilla_lanigera
ENSCGRG00000006554	-	100	99.248	ENSCSAG00000015485	LSM1	100	99.248	Chlorocebus_sabaeus
ENSCGRG00000006554	-	100	98.496	ENSCHOG00000006030	LSM1	100	98.496	Choloepus_hoffmanni
ENSCGRG00000006554	-	95	88.189	ENSCPBG00000006569	LSM1	86	88.189	Chrysemys_picta_bellii
ENSCGRG00000006554	-	99	66.667	ENSCING00000013536	-	99	66.667	Ciona_intestinalis
ENSCGRG00000006554	-	100	99.248	ENSCANG00000019173	LSM1	100	99.248	Colobus_angolensis_palliatus
ENSCGRG00000006554	-	100	100.000	ENSCGRG00001024560	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000006554	-	80	82.883	ENSCGRG00001002259	-	97	82.883	Cricetulus_griseus_chok1gshd
ENSCGRG00000006554	-	100	82.707	ENSCSEG00000010570	lsm1	92	82.707	Cynoglossus_semilaevis
ENSCGRG00000006554	-	100	81.955	ENSCSEG00000008319	lsm1	92	81.955	Cynoglossus_semilaevis
ENSCGRG00000006554	-	100	82.707	ENSCVAG00000003871	lsm1	100	82.707	Cyprinodon_variegatus
ENSCGRG00000006554	-	100	84.962	ENSDARG00000043177	lsm1	100	84.962	Danio_rerio
ENSCGRG00000006554	-	100	99.248	ENSDNOG00000046387	-	100	99.248	Dasypus_novemcinctus
ENSCGRG00000006554	-	100	93.233	ENSDNOG00000030989	-	100	93.233	Dasypus_novemcinctus
ENSCGRG00000006554	-	89	78.992	ENSDNOG00000046620	-	100	78.992	Dasypus_novemcinctus
ENSCGRG00000006554	-	100	98.496	ENSDNOG00000032911	-	100	98.496	Dasypus_novemcinctus
ENSCGRG00000006554	-	100	99.248	ENSDORG00000028172	Lsm1	100	99.248	Dipodomys_ordii
ENSCGRG00000006554	-	93	64.516	FBgn0261067	LSm1	91	64.516	Drosophila_melanogaster
ENSCGRG00000006554	-	100	99.248	ENSEASG00005016677	LSM1	100	99.248	Equus_asinus_asinus
ENSCGRG00000006554	-	100	99.248	ENSECAG00000010461	LSM1	100	99.248	Equus_caballus
ENSCGRG00000006554	-	100	69.925	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSCGRG00000006554	-	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSCGRG00000006554	-	100	84.962	ENSELUG00000023374	lsm1	100	84.962	Esox_lucius
ENSCGRG00000006554	-	100	99.248	ENSFCAG00000039335	LSM1	100	99.248	Felis_catus
ENSCGRG00000006554	-	89	94.068	ENSFALG00000006723	LSM1	100	94.068	Ficedula_albicollis
ENSCGRG00000006554	-	100	99.248	ENSFDAG00000007658	LSM1	100	99.248	Fukomys_damarensis
ENSCGRG00000006554	-	100	82.707	ENSFHEG00000009556	lsm1	100	82.707	Fundulus_heteroclitus
ENSCGRG00000006554	-	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSCGRG00000006554	-	100	92.481	ENSGALG00000003245	LSM1	100	92.481	Gallus_gallus
ENSCGRG00000006554	-	100	82.707	ENSGAFG00000011355	lsm1	100	82.707	Gambusia_affinis
ENSCGRG00000006554	-	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSCGRG00000006554	-	100	94.737	ENSGAGG00000024065	LSM1	100	94.737	Gopherus_agassizii
ENSCGRG00000006554	-	100	99.248	ENSGGOG00000022658	LSM1	100	99.248	Gorilla_gorilla
ENSCGRG00000006554	-	100	83.459	ENSHBUG00000010897	lsm1	100	83.459	Haplochromis_burtoni
ENSCGRG00000006554	-	100	99.248	ENSHGLG00000005711	LSM1	100	99.248	Heterocephalus_glaber_female
ENSCGRG00000006554	-	100	78.947	ENSHGLG00000017574	-	100	78.947	Heterocephalus_glaber_female
ENSCGRG00000006554	-	100	99.248	ENSHGLG00100017660	LSM1	100	99.248	Heterocephalus_glaber_male
ENSCGRG00000006554	-	100	78.947	ENSHGLG00100012152	-	100	78.947	Heterocephalus_glaber_male
ENSCGRG00000006554	-	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSCGRG00000006554	-	100	84.211	ENSIPUG00000002312	LSM1	100	84.211	Ictalurus_punctatus
ENSCGRG00000006554	-	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSCGRG00000006554	-	100	97.744	ENSJJAG00000014605	-	100	97.744	Jaculus_jaculus
ENSCGRG00000006554	-	100	83.459	ENSKMAG00000003016	lsm1	100	83.459	Kryptolebias_marmoratus
ENSCGRG00000006554	-	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSCGRG00000006554	-	89	89.831	ENSLACG00000010947	LSM1	98	89.831	Latimeria_chalumnae
ENSCGRG00000006554	-	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSCGRG00000006554	-	100	99.248	ENSLAFG00000003534	LSM1	100	99.248	Loxodonta_africana
ENSCGRG00000006554	-	100	99.248	ENSMFAG00000032661	LSM1	100	99.248	Macaca_fascicularis
ENSCGRG00000006554	-	100	99.248	ENSMLEG00000034535	LSM1	100	99.248	Mandrillus_leucophaeus
ENSCGRG00000006554	-	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSCGRG00000006554	-	100	83.459	ENSMZEG00005010321	lsm1	100	83.459	Maylandia_zebra
ENSCGRG00000006554	-	100	92.481	ENSMGAG00000002125	LSM1	100	92.481	Meleagris_gallopavo
ENSCGRG00000006554	-	100	98.496	ENSMICG00000030726	LSM1	100	98.496	Microcebus_murinus
ENSCGRG00000006554	-	100	100.000	ENSMOCG00000022817	Lsm1	100	100.000	Microtus_ochrogaster
ENSCGRG00000006554	-	100	84.211	ENSMMOG00000015466	lsm1	100	84.211	Mola_mola
ENSCGRG00000006554	-	100	96.992	ENSMODG00000010732	-	100	96.992	Monodelphis_domestica
ENSCGRG00000006554	-	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSCGRG00000006554	-	100	98.496	MGP_CAROLIEiJ_G0030930	Lsm1	100	98.496	Mus_caroli
ENSCGRG00000006554	-	100	98.496	ENSMUSG00000037296	Lsm1	100	98.496	Mus_musculus
ENSCGRG00000006554	-	100	98.496	MGP_PahariEiJ_G0021400	Lsm1	100	98.496	Mus_pahari
ENSCGRG00000006554	-	100	98.496	MGP_SPRETEiJ_G0032049	Lsm1	100	98.496	Mus_spretus
ENSCGRG00000006554	-	100	98.496	ENSMPUG00000009883	LSM1	100	98.496	Mustela_putorius_furo
ENSCGRG00000006554	-	100	98.496	ENSMLUG00000003734	LSM1	100	98.496	Myotis_lucifugus
ENSCGRG00000006554	-	100	98.496	ENSNGAG00000003753	Lsm1	100	98.496	Nannospalax_galili
ENSCGRG00000006554	-	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSCGRG00000006554	-	100	99.248	ENSNLEG00000029390	LSM1	100	99.248	Nomascus_leucogenys
ENSCGRG00000006554	-	100	96.992	ENSMEUG00000014077	LSM1	100	96.992	Notamacropus_eugenii
ENSCGRG00000006554	-	88	94.872	ENSOPRG00000000333	LSM1	100	94.872	Ochotona_princeps
ENSCGRG00000006554	-	100	99.248	ENSODEG00000004834	LSM1	100	99.248	Octodon_degus
ENSCGRG00000006554	-	100	83.459	ENSONIG00000010782	lsm1	100	83.459	Oreochromis_niloticus
ENSCGRG00000006554	-	100	96.241	ENSOANG00000003256	LSM1	100	96.241	Ornithorhynchus_anatinus
ENSCGRG00000006554	-	100	99.248	ENSOCUG00000015399	LSM1	100	99.248	Oryctolagus_cuniculus
ENSCGRG00000006554	-	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSCGRG00000006554	-	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
ENSCGRG00000006554	-	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSCGRG00000006554	-	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSCGRG00000006554	-	100	83.459	ENSOMEG00000012454	lsm1	100	83.459	Oryzias_melastigma
ENSCGRG00000006554	-	100	99.248	ENSOGAG00000015161	LSM1	100	99.248	Otolemur_garnettii
ENSCGRG00000006554	-	100	99.248	ENSOARG00000001317	LSM1	100	99.248	Ovis_aries
ENSCGRG00000006554	-	100	99.248	ENSPPAG00000032279	LSM1	100	99.248	Pan_paniscus
ENSCGRG00000006554	-	100	99.248	ENSPPRG00000014172	-	100	99.248	Panthera_pardus
ENSCGRG00000006554	-	100	99.248	ENSPTIG00000010289	LSM1	100	99.248	Panthera_tigris_altaica
ENSCGRG00000006554	-	100	99.248	ENSPTRG00000020169	LSM1	100	99.248	Pan_troglodytes
ENSCGRG00000006554	-	100	99.248	ENSPANG00000008814	LSM1	100	99.248	Papio_anubis
ENSCGRG00000006554	-	100	81.955	ENSPKIG00000019409	LSM1	99	81.955	Paramormyrops_kingsleyae
ENSCGRG00000006554	-	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSCGRG00000006554	-	98	88.462	ENSPSIG00000012563	LSM1	99	88.462	Pelodiscus_sinensis
ENSCGRG00000006554	-	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSCGRG00000006554	-	85	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSCGRG00000006554	-	100	95.489	ENSPCIG00000008880	LSM1	100	95.489	Phascolarctos_cinereus
ENSCGRG00000006554	-	100	82.707	ENSPFOG00000016029	lsm1	100	82.707	Poecilia_formosa
ENSCGRG00000006554	-	100	82.707	ENSPLAG00000007879	lsm1	100	82.707	Poecilia_latipinna
ENSCGRG00000006554	-	100	82.707	ENSPMEG00000023550	lsm1	100	82.707	Poecilia_mexicana
ENSCGRG00000006554	-	100	82.707	ENSPREG00000009574	lsm1	100	82.707	Poecilia_reticulata
ENSCGRG00000006554	-	100	99.248	ENSPPYG00000018521	LSM1	100	99.248	Pongo_abelii
ENSCGRG00000006554	-	100	99.248	ENSPCOG00000020901	-	100	99.248	Propithecus_coquereli
ENSCGRG00000006554	-	100	99.248	ENSPVAG00000006016	LSM1	100	99.248	Pteropus_vampyrus
ENSCGRG00000006554	-	100	83.459	ENSPNYG00000018067	lsm1	100	83.459	Pundamilia_nyererei
ENSCGRG00000006554	-	100	84.962	ENSPNAG00000013707	lsm1	100	84.962	Pygocentrus_nattereri
ENSCGRG00000006554	-	100	98.496	ENSRNOG00000015375	Lsm1	100	98.496	Rattus_norvegicus
ENSCGRG00000006554	-	100	99.248	ENSRBIG00000027449	LSM1	100	99.248	Rhinopithecus_bieti
ENSCGRG00000006554	-	100	99.248	ENSRROG00000036074	LSM1	100	99.248	Rhinopithecus_roxellana
ENSCGRG00000006554	-	87	42.149	YJL124C	LSM1	70	42.149	Saccharomyces_cerevisiae
ENSCGRG00000006554	-	100	96.992	ENSSHAG00000017260	LSM1	100	96.992	Sarcophilus_harrisii
ENSCGRG00000006554	-	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSCGRG00000006554	-	100	83.459	ENSSMAG00000004930	lsm1	100	83.459	Scophthalmus_maximus
ENSCGRG00000006554	-	100	83.459	ENSSDUG00000021823	lsm1	100	83.459	Seriola_dumerili
ENSCGRG00000006554	-	100	83.459	ENSSLDG00000012154	lsm1	100	83.459	Seriola_lalandi_dorsalis
ENSCGRG00000006554	-	100	94.737	ENSSPUG00000014878	LSM1	100	94.737	Sphenodon_punctatus
ENSCGRG00000006554	-	100	84.211	ENSSPAG00000020548	lsm1	100	84.211	Stegastes_partitus
ENSCGRG00000006554	-	100	99.248	ENSSSCG00000039058	LSM1	100	99.248	Sus_scrofa
ENSCGRG00000006554	-	100	93.985	ENSTGUG00000004793	LSM1	100	93.985	Taeniopygia_guttata
ENSCGRG00000006554	-	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSCGRG00000006554	-	100	85.714	ENSTNIG00000004055	lsm1	100	85.714	Tetraodon_nigroviridis
ENSCGRG00000006554	-	88	98.291	ENSTBEG00000015884	LSM1	100	98.291	Tupaia_belangeri
ENSCGRG00000006554	-	100	99.248	ENSTTRG00000004482	LSM1	100	99.248	Tursiops_truncatus
ENSCGRG00000006554	-	100	99.248	ENSUAMG00000004103	LSM1	100	99.248	Ursus_americanus
ENSCGRG00000006554	-	100	99.248	ENSUMAG00000009132	LSM1	100	99.248	Ursus_maritimus
ENSCGRG00000006554	-	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSCGRG00000006554	-	100	99.248	ENSVVUG00000020191	LSM1	100	99.248	Vulpes_vulpes
ENSCGRG00000006554	-	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSCGRG00000006554	-	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSCGRG00000006554	-	100	81.955	ENSXCOG00000015631	lsm1	100	81.955	Xiphophorus_couchianus
ENSCGRG00000006554	-	100	81.955	ENSXMAG00000026637	lsm1	100	81.955	Xiphophorus_maculatus