EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCGRG00000007627 (Gene tree)
Gene ID
-
Gene Symbol
Upf3b
Alias
5730594O13Rik|RENT3B|UPF3X
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Cricetulus_griseus_crigri
Status
putative
Strand
Plus strand
Length
18911 bases
Position
chrJH000189.1:235209-254119
Accession
100767364
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCGRP00000010394Smg4_UPF3PF03467.154e-5111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCGRT00000010566-2093XM_007640750ENSCGRP00000010394418 (aa)XP_007638940-
Gene Model
Click here to download ENSCGRG00000007627's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000007627's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCGRG00000007627Upf3b10085.238ENSG00000125351UPF3B8985.000Homo_sapiens
ENSCGRG00000007627Upf3b9358.647ENSAPOG00000012775upf3b8658.396Acanthochromis_polyacanthus
ENSCGRG00000007627Upf3b9349.254ENSAMEG00000004259UPF3A5553.876Ailuropoda_melanoleuca
ENSCGRG00000007627Upf3b10085.476ENSAMEG00000000163UPF3B8985.238Ailuropoda_melanoleuca
ENSCGRG00000007627Upf3b9357.531ENSACIG00000013582upf3b8655.831Amphilophus_citrinellus
ENSCGRG00000007627Upf3b9357.360ENSAOCG00000000706upf3b8656.892Amphiprion_ocellaris
ENSCGRG00000007627Upf3b9358.376ENSAPEG00000005545upf3b8658.081Amphiprion_percula
ENSCGRG00000007627Upf3b9359.406ENSATEG00000018742upf3b8658.145Anabas_testudineus
ENSCGRG00000007627Upf3b9965.412ENSACAG00000003625UPF3B9065.412Anolis_carolinensis
ENSCGRG00000007627Upf3b9348.601ENSACAG00000001540UPF3A9250.882Anolis_carolinensis
ENSCGRG00000007627Upf3b5171.698ENSANAG00000033169-7870.968Aotus_nancymaae
ENSCGRG00000007627Upf3b10085.714ENSANAG00000021894-8494.009Aotus_nancymaae
ENSCGRG00000007627Upf3b10083.333ENSANAG00000025598-8981.190Aotus_nancymaae
ENSCGRG00000007627Upf3b9358.706ENSACLG00000001649upf3b8657.357Astatotilapia_calliptera
ENSCGRG00000007627Upf3b5267.105ENSAMXG00000000199upf3b7564.474Astyanax_mexicanus
ENSCGRG00000007627Upf3b6594.009ENSBTAG00000035615UPF3B8394.009Bos_taurus
ENSCGRG00000007627Upf3b10084.762ENSCJAG00000004975UPF3B8493.088Callithrix_jacchus
ENSCGRG00000007627Upf3b10082.448ENSCAFG00000018426UPF3B8983.374Canis_familiaris
ENSCGRG00000007627Upf3b10082.619ENSCAFG00020004074UPF3B8981.667Canis_lupus_dingo
ENSCGRG00000007627Upf3b10081.755ENSCHIG00000000247-8981.524Capra_hircus
ENSCGRG00000007627Upf3b10060.238ENSCHIG00000011454-9056.905Capra_hircus
ENSCGRG00000007627Upf3b9781.517ENSCHIG00000018011-8394.009Capra_hircus
ENSCGRG00000007627Upf3b9349.750ENSCHIG00000008682UPF3A7644.304Capra_hircus
ENSCGRG00000007627Upf3b8343.132ENSTSYG00000001918UPF3A5054.839Carlito_syrichta
ENSCGRG00000007627Upf3b10085.952ENSTSYG00000014690UPF3B8985.000Carlito_syrichta
ENSCGRG00000007627Upf3b9951.090ENSCCAG00000029813-8654.369Cebus_capucinus
ENSCGRG00000007627Upf3b5289.542ENSCCAG00000021964-7389.542Cebus_capucinus
ENSCGRG00000007627Upf3b10085.000ENSCATG00000017506UPF3B8494.009Cercocebus_atys
ENSCGRG00000007627Upf3b10084.762ENSCLAG00000003260UPF3B8984.524Chinchilla_lanigera
ENSCGRG00000007627Upf3b10082.679ENSCSAG00000018348UPF3B8982.448Chlorocebus_sabaeus
ENSCGRG00000007627Upf3b9848.941ENSCSAG00000017388UPF3A5059.574Chlorocebus_sabaeus
ENSCGRG00000007627Upf3b9963.615ENSCPBG00000020685UPF3B9062.911Chrysemys_picta_bellii
ENSCGRG00000007627Upf3b6794.009ENSCANG00000029220UPF3B8494.009Colobus_angolensis_palliatus
ENSCGRG00000007627Upf3b7299.331ENSCGRG00001013643-8199.331Cricetulus_griseus_chok1gshd
ENSCGRG00000007627Upf3b10099.761ENSCGRG00001006858-8999.761Cricetulus_griseus_chok1gshd
ENSCGRG00000007627Upf3b9354.822ENSCSEG00000002046upf3b5863.799Cynoglossus_semilaevis
ENSCGRG00000007627Upf3b9355.416ENSCVAG00000005030upf3b8653.250Cyprinodon_variegatus
ENSCGRG00000007627Upf3b9357.393ENSDARG00000000489upf3b8955.875Danio_rerio
ENSCGRG00000007627Upf3b8650.413ENSDNOG00000034391UPF3A6152.347Dasypus_novemcinctus
ENSCGRG00000007627Upf3b10081.986ENSDNOG00000008665UPF3B8981.755Dasypus_novemcinctus
ENSCGRG00000007627Upf3b10084.286ENSDORG00000006077Upf3b8983.333Dipodomys_ordii
ENSCGRG00000007627Upf3b9342.963ENSETEG00000010110UPF3A8039.698Echinops_telfairi
ENSCGRG00000007627Upf3b9983.055ENSEASG00005012919UPF3B8982.816Equus_asinus_asinus
ENSCGRG00000007627Upf3b9351.263ENSEASG00005021884UPF3A7844.221Equus_asinus_asinus
ENSCGRG00000007627Upf3b9983.055ENSECAG00000016947UPF3B8982.816Equus_caballus
ENSCGRG00000007627Upf3b9153.382ENSELUG00000020389upf3b5764.982Esox_lucius
ENSCGRG00000007627Upf3b10083.333ENSFCAG00000004388UPF3B8984.360Felis_catus
ENSCGRG00000007627Upf3b9963.636ENSFALG00000001569UPF3B8863.820Ficedula_albicollis
ENSCGRG00000007627Upf3b10085.000ENSFDAG00000018869UPF3B8984.762Fukomys_damarensis
ENSCGRG00000007627Upf3b9354.707ENSFHEG00000017895upf3b8555.584Fundulus_heteroclitus
ENSCGRG00000007627Upf3b9356.281ENSGMOG00000001621upf3b8754.034Gadus_morhua
ENSCGRG00000007627Upf3b9964.037ENSGALG00000008618UPF3B8866.353Gallus_gallus
ENSCGRG00000007627Upf3b9355.980ENSGAFG00000000829upf3b8658.000Gambusia_affinis
ENSCGRG00000007627Upf3b9158.270ENSGACG00000017435upf3b8073.516Gasterosteus_aculeatus
ENSCGRG00000007627Upf3b9966.197ENSGAGG00000001219UPF3B9065.493Gopherus_agassizii
ENSCGRG00000007627Upf3b10085.238ENSGGOG00000023995UPF3B8494.009Gorilla_gorilla
ENSCGRG00000007627Upf3b9358.706ENSHBUG00000017393upf3b8657.357Haplochromis_burtoni
ENSCGRG00000007627Upf3b5660.169ENSHGLG00000001544UPF3A5555.172Heterocephalus_glaber_female
ENSCGRG00000007627Upf3b8477.429ENSHGLG00000011189-8278.000Heterocephalus_glaber_female
ENSCGRG00000007627Upf3b10084.524ENSHGLG00000019582-8984.286Heterocephalus_glaber_female
ENSCGRG00000007627Upf3b10082.619ENSHGLG00100002042-8983.333Heterocephalus_glaber_male
ENSCGRG00000007627Upf3b5660.169ENSHGLG00100013244UPF3A5555.172Heterocephalus_glaber_male
ENSCGRG00000007627Upf3b8477.429ENSHGLG00100001889-8276.857Heterocephalus_glaber_male
ENSCGRG00000007627Upf3b9358.250ENSHCOG00000017004upf3b8856.204Hippocampus_comes
ENSCGRG00000007627Upf3b10054.988ENSIPUG00000019249upf3b9255.116Ictalurus_punctatus
ENSCGRG00000007627Upf3b10084.286ENSSTOG00000001101UPF3B8984.048Ictidomys_tridecemlineatus
ENSCGRG00000007627Upf3b10091.429ENSJJAG00000000053Upf3b8991.429Jaculus_jaculus
ENSCGRG00000007627Upf3b9356.030ENSKMAG00000020300upf3b8654.369Kryptolebias_marmoratus
ENSCGRG00000007627Upf3b5671.368ENSLBEG00000028689upf3b5171.368Labrus_bergylta
ENSCGRG00000007627Upf3b6837.539ENSLACG00000006645UPF3A6769.231Latimeria_chalumnae
ENSCGRG00000007627Upf3b10060.138ENSLACG00000008691UPF3B9259.447Latimeria_chalumnae
ENSCGRG00000007627Upf3b5574.569ENSLOCG00000015238upf3b9155.769Lepisosteus_oculatus
ENSCGRG00000007627Upf3b9352.618ENSLOCG00000002665upf3a8249.118Lepisosteus_oculatus
ENSCGRG00000007627Upf3b10083.095ENSLAFG00000001267UPF3B8982.857Loxodonta_africana
ENSCGRG00000007627Upf3b9345.408ENSLAFG00000023358UPF3A9943.095Loxodonta_africana
ENSCGRG00000007627Upf3b10085.000ENSMFAG00000045414UPF3B8494.009Macaca_fascicularis
ENSCGRG00000007627Upf3b9250.380ENSMMUG00000007449UPF3A6154.348Macaca_mulatta
ENSCGRG00000007627Upf3b10085.000ENSMMUG00000020222UPF3B8494.009Macaca_mulatta
ENSCGRG00000007627Upf3b10085.000ENSMNEG00000039794UPF3B8494.009Macaca_nemestrina
ENSCGRG00000007627Upf3b9849.289ENSMLEG00000014726UPF3A6554.348Mandrillus_leucophaeus
ENSCGRG00000007627Upf3b10085.000ENSMLEG00000010999UPF3B8494.009Mandrillus_leucophaeus
ENSCGRG00000007627Upf3b9348.009ENSMAMG00000020069upf3b8750.234Mastacembelus_armatus
ENSCGRG00000007627Upf3b9358.955ENSMZEG00005007871upf3b8657.606Maylandia_zebra
ENSCGRG00000007627Upf3b9161.616ENSMGAG00000007728UPF3B9963.333Meleagris_gallopavo
ENSCGRG00000007627Upf3b9649.758ENSMGAG00000014837UPF3A9849.398Meleagris_gallopavo
ENSCGRG00000007627Upf3b10090.931ENSMAUG00000008705Upf3b8990.931Mesocricetus_auratus
ENSCGRG00000007627Upf3b6593.578ENSMICG00000001743UPF3B8493.578Microcebus_murinus
ENSCGRG00000007627Upf3b10088.684ENSMOCG00000017893Upf3b8987.991Microtus_ochrogaster
ENSCGRG00000007627Upf3b9356.633ENSMMOG00000004183upf3b8657.761Mola_mola
ENSCGRG00000007627Upf3b9354.135ENSMODG00000003159UPF3A9152.088Monodelphis_domestica
ENSCGRG00000007627Upf3b9970.379ENSMODG00000010232UPF3B9970.379Monodelphis_domestica
ENSCGRG00000007627Upf3b6664.260ENSMALG00000008042upf3b9055.370Monopterus_albus
ENSCGRG00000007627Upf3b5662.288MGP_CAROLIEiJ_G0030848Upf3a5457.709Mus_caroli
ENSCGRG00000007627Upf3b10092.857MGP_CAROLIEiJ_G0032999Upf3b8992.857Mus_caroli
ENSCGRG00000007627Upf3b10093.333ENSMUSG00000036572Upf3b8993.333Mus_musculus
ENSCGRG00000007627Upf3b5661.864ENSMUSG00000038398Upf3a5357.709Mus_musculus
ENSCGRG00000007627Upf3b10091.667MGP_PahariEiJ_G0031543Upf3b8991.667Mus_pahari
ENSCGRG00000007627Upf3b5662.288MGP_PahariEiJ_G0021311Upf3a5456.897Mus_pahari
ENSCGRG00000007627Upf3b7053.795MGP_SPRETEiJ_G0031958Upf3a5357.709Mus_spretus
ENSCGRG00000007627Upf3b10093.333MGP_SPRETEiJ_G0034152Upf3b8993.333Mus_spretus
ENSCGRG00000007627Upf3b9784.841ENSMPUG00000001531UPF3B8983.863Mustela_putorius_furo
ENSCGRG00000007627Upf3b9350.856ENSMLUG00000015905UPF3A9246.552Myotis_lucifugus
ENSCGRG00000007627Upf3b10086.190ENSMLUG00000010821UPF3B8984.762Myotis_lucifugus
ENSCGRG00000007627Upf3b10088.571ENSNGAG00000008231Upf3b8988.571Nannospalax_galili
ENSCGRG00000007627Upf3b5662.712ENSNGAG00000019314Upf3a5357.709Nannospalax_galili
ENSCGRG00000007627Upf3b10085.000ENSNLEG00000014897UPF3B8984.762Nomascus_leucogenys
ENSCGRG00000007627Upf3b7482.581ENSMEUG00000015615UPF3B8182.692Notamacropus_eugenii
ENSCGRG00000007627Upf3b10079.286ENSODEG00000002186-8978.810Octodon_degus
ENSCGRG00000007627Upf3b10055.684ENSONIG00000002536upf3b9256.481Oreochromis_niloticus
ENSCGRG00000007627Upf3b8944.792ENSOANG00000006985-5458.874Ornithorhynchus_anatinus
ENSCGRG00000007627Upf3b9960.748ENSOANG00000002594-9960.606Ornithorhynchus_anatinus
ENSCGRG00000007627Upf3b10083.834ENSOCUG00000010213UPF3B8983.603Oryctolagus_cuniculus
ENSCGRG00000007627Upf3b9351.852ENSORLG00000010911upf3a8146.384Oryzias_latipes
ENSCGRG00000007627Upf3b10054.567ENSORLG00000001026upf3b8955.690Oryzias_latipes
ENSCGRG00000007627Upf3b10054.098ENSORLG00020003758upf3b8955.206Oryzias_latipes_hni
ENSCGRG00000007627Upf3b9350.374ENSORLG00020014317upf3a8046.020Oryzias_latipes_hni
ENSCGRG00000007627Upf3b10054.567ENSORLG00015012954upf3b8955.690Oryzias_latipes_hsok
ENSCGRG00000007627Upf3b9755.181ENSOMEG00000014736upf3b8955.932Oryzias_melastigma
ENSCGRG00000007627Upf3b9774.390ENSOGAG00000033003-8974.634Otolemur_garnettii
ENSCGRG00000007627Upf3b10086.190ENSOGAG00000004643-8985.952Otolemur_garnettii
ENSCGRG00000007627Upf3b6857.732ENSOGAG00000004788UPF3A6454.244Otolemur_garnettii
ENSCGRG00000007627Upf3b9965.789ENSOARG00000007869-9861.483Ovis_aries
ENSCGRG00000007627Upf3b10081.193ENSOARG00000016051-8980.963Ovis_aries
ENSCGRG00000007627Upf3b10085.238ENSPPAG00000040390UPF3B8494.009Pan_paniscus
ENSCGRG00000007627Upf3b10085.476ENSPPRG00000023536UPF3B8985.238Panthera_pardus
ENSCGRG00000007627Upf3b10081.336ENSPTIG00000015264UPF3B8494.009Panthera_tigris_altaica
ENSCGRG00000007627Upf3b10085.238ENSPTRG00000022228UPF3B8494.009Pan_troglodytes
ENSCGRG00000007627Upf3b10085.000ENSPANG00000000900UPF3B8494.009Papio_anubis
ENSCGRG00000007627Upf3b10054.907ENSPKIG00000019226upf3b6778.846Paramormyrops_kingsleyae
ENSCGRG00000007627Upf3b6171.103ENSPSIG00000005833UPF3B8472.385Pelodiscus_sinensis
ENSCGRG00000007627Upf3b9551.765ENSPSIG00000007468UPF3A9851.551Pelodiscus_sinensis
ENSCGRG00000007627Upf3b5372.000ENSPMGG00000016067upf3b8272.000Periophthalmus_magnuspinnatus
ENSCGRG00000007627Upf3b10091.924ENSPEMG00000012352Upf3b8991.924Peromyscus_maniculatus_bairdii
ENSCGRG00000007627Upf3b9769.398ENSPCIG00000028914UPF3B8866.114Phascolarctos_cinereus
ENSCGRG00000007627Upf3b7260.825ENSPCIG00000019590-6270.423Phascolarctos_cinereus
ENSCGRG00000007627Upf3b9555.224ENSPLAG00000005105upf3b8658.250Poecilia_latipinna
ENSCGRG00000007627Upf3b6269.333ENSPLAG00000011960upf3a6568.657Poecilia_latipinna
ENSCGRG00000007627Upf3b9356.997ENSPLAG00000019922upf3b8658.250Poecilia_latipinna
ENSCGRG00000007627Upf3b9356.997ENSPMEG00000023532upf3b8658.250Poecilia_mexicana
ENSCGRG00000007627Upf3b6393.578ENSPPYG00000020675-8493.578Pongo_abelii
ENSCGRG00000007627Upf3b10080.831ENSPCAG00000009464UPF3B8980.600Procavia_capensis
ENSCGRG00000007627Upf3b10085.511ENSPCOG00000021960UPF3B8493.578Propithecus_coquereli
ENSCGRG00000007627Upf3b9345.885ENSPVAG00000005656UPF3A8241.278Pteropus_vampyrus
ENSCGRG00000007627Upf3b10071.132ENSPVAG00000014075UPF3B8969.053Pteropus_vampyrus
ENSCGRG00000007627Upf3b9357.035ENSPNYG00000009846upf3b8657.895Pundamilia_nyererei
ENSCGRG00000007627Upf3b10055.530ENSPNAG00000021528upf3b9256.120Pygocentrus_nattereri
ENSCGRG00000007627Upf3b5662.712ENSRNOG00000017397Upf3a5662.712Rattus_norvegicus
ENSCGRG00000007627Upf3b10092.619ENSRNOG00000039994Upf3b8992.619Rattus_norvegicus
ENSCGRG00000007627Upf3b9281.865ENSRBIG00000037219UPF3B10081.606Rhinopithecus_bieti
ENSCGRG00000007627Upf3b9848.578ENSRBIG00000034007UPF3A6354.317Rhinopithecus_bieti
ENSCGRG00000007627Upf3b10085.238ENSRROG00000041031UPF3B8494.009Rhinopithecus_roxellana
ENSCGRG00000007627Upf3b9849.052ENSRROG00000012212UPF3A5954.348Rhinopithecus_roxellana
ENSCGRG00000007627Upf3b10085.476ENSSBOG00000019740UPF3B8494.009Saimiri_boliviensis_boliviensis
ENSCGRG00000007627Upf3b9573.201ENSSHAG00000008634UPF3B8472.070Sarcophilus_harrisii
ENSCGRG00000007627Upf3b9354.135ENSSHAG00000009895UPF3A9352.088Sarcophilus_harrisii
ENSCGRG00000007627Upf3b10057.377ENSSFOG00015005614upf3b9355.189Scleropages_formosus
ENSCGRG00000007627Upf3b9258.186ENSSMAG00000012913upf3b7274.429Scophthalmus_maximus
ENSCGRG00000007627Upf3b9356.858ENSSDUG00000005682upf3b8657.178Seriola_dumerili
ENSCGRG00000007627Upf3b9843.333ENSSDUG00000009680upf3a6274.257Seriola_dumerili
ENSCGRG00000007627Upf3b9356.642ENSSLDG00000003130upf3b8656.931Seriola_lalandi_dorsalis
ENSCGRG00000007627Upf3b10075.459ENSSARG00000004147UPF3B10077.650Sorex_araneus
ENSCGRG00000007627Upf3b9237.186ENSSARG00000007262UPF3A9237.468Sorex_araneus
ENSCGRG00000007627Upf3b9964.569ENSSPUG00000013082UPF3B8863.403Sphenodon_punctatus
ENSCGRG00000007627Upf3b9356.281ENSSPAG00000009989upf3b8657.463Stegastes_partitus
ENSCGRG00000007627Upf3b10085.000ENSSSCG00000012617UPF3B8984.762Sus_scrofa
ENSCGRG00000007627Upf3b9348.878ENSSSCG00000024679UPF3A5459.031Sus_scrofa
ENSCGRG00000007627Upf3b9253.904ENSTGUG00000009493UPF3A9753.652Taeniopygia_guttata
ENSCGRG00000007627Upf3b9966.824ENSTGUG00000003413UPF3B9967.059Taeniopygia_guttata
ENSCGRG00000007627Upf3b9546.651ENSTRUG00000012730upf3a8148.756Takifugu_rubripes
ENSCGRG00000007627Upf3b9358.734ENSTRUG00000010645upf3b8757.828Takifugu_rubripes
ENSCGRG00000007627Upf3b9454.020ENSTNIG00000015763upf3b8652.381Tetraodon_nigroviridis
ENSCGRG00000007627Upf3b7540.741ENSTBEG00000017186-6044.388Tupaia_belangeri
ENSCGRG00000007627Upf3b10067.667ENSTBEG00000003229UPF3B8966.975Tupaia_belangeri
ENSCGRG00000007627Upf3b8939.896ENSTTRG00000015414UPF3A7639.788Tursiops_truncatus
ENSCGRG00000007627Upf3b10083.333ENSUAMG00000024565UPF3B8983.333Ursus_americanus
ENSCGRG00000007627Upf3b10081.667ENSUMAG00000002150UPF3B9082.143Ursus_maritimus
ENSCGRG00000007627Upf3b9581.796ENSVPAG00000009971UPF3B10081.553Vicugna_pacos
ENSCGRG00000007627Upf3b9845.388ENSVPAG00000003525UPF3A5756.897Vicugna_pacos
ENSCGRG00000007627Upf3b10082.619ENSVVUG00000011594UPF3B8981.667Vulpes_vulpes
ENSCGRG00000007627Upf3b9556.404ENSXETG00000007440upf3b8478.756Xenopus_tropicalis
ENSCGRG00000007627Upf3b9246.717ENSXETG00000002572upf3a8843.902Xenopus_tropicalis
ENSCGRG00000007627Upf3b9354.962ENSXCOG00000016586upf3b7876.282Xiphophorus_couchianus
ENSCGRG00000007627Upf3b9357.107ENSXMAG00000013680upf3b8658.000Xiphophorus_maculatus

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