EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00000007698 (Gene tree)
Gene ID: -
Gene Symbol: Smn1
Alias: SMN
Full Name: survival motor neuron protein
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Minus strand
Length: 12965 bases
Position: chrJH000410.1:35828-48792
Accession: 100756440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000010483	SMN	PF06003.12	3e-107	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000010656	-	1240	XM_003503680	ENSCGRP00000010483	287 (aa)	XP_003503728	UPI00022F4C34
ENSCGRT00000010657	-	120	-	ENSCGRP00000010484	39 (aa)	-	-

Gene Model

Click here to download ENSCGRG00000007698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000007698's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000007698	Smn1	97	83.986	ENSG00000172062	SMN1	95	88.000	Homo_sapiens
ENSCGRG00000007698	Smn1	97	83.986	ENSG00000205571	SMN2	95	88.000	Homo_sapiens
ENSCGRG00000007698	Smn1	93	51.111	ENSAPOG00000011324	smn1	94	52.727	Acanthochromis_polyacanthus
ENSCGRG00000007698	Smn1	97	85.461	ENSAMEG00000003316	-	96	85.172	Ailuropoda_melanoleuca
ENSCGRG00000007698	Smn1	53	57.143	ENSACIG00000007598	smn1	89	57.143	Amphilophus_citrinellus
ENSCGRG00000007698	Smn1	89	51.163	ENSACIG00000019772	-	97	51.163	Amphilophus_citrinellus
ENSCGRG00000007698	Smn1	93	51.481	ENSAOCG00000024444	smn1	94	52.727	Amphiprion_ocellaris
ENSCGRG00000007698	Smn1	93	51.852	ENSAPEG00000016504	smn1	94	53.091	Amphiprion_percula
ENSCGRG00000007698	Smn1	90	53.731	ENSATEG00000002182	smn1	79	54.198	Anabas_testudineus
ENSCGRG00000007698	Smn1	68	53.807	ENSAPLG00000010912	-	97	52.792	Anas_platyrhynchos
ENSCGRG00000007698	Smn1	99	54.237	ENSACAG00000010017	-	95	55.396	Anolis_carolinensis
ENSCGRG00000007698	Smn1	99	81.293	ENSANAG00000032133	-	99	81.293	Aotus_nancymaae
ENSCGRG00000007698	Smn1	93	47.653	ENSACLG00000007308	smn1	88	53.101	Astatotilapia_calliptera
ENSCGRG00000007698	Smn1	93	50.000	ENSAMXG00000013884	smn1	95	51.825	Astyanax_mexicanus
ENSCGRG00000007698	Smn1	97	80.357	ENSBTAG00000005743	SMN2	99	79.094	Bos_taurus
ENSCGRG00000007698	Smn1	97	81.560	ENSCJAG00000016290	-	99	80.887	Callithrix_jacchus
ENSCGRG00000007698	Smn1	100	85.172	ENSCAFG00000007812	SMN	100	85.172	Canis_familiaris
ENSCGRG00000007698	Smn1	99	85.417	ENSCAFG00020019229	-	93	85.417	Canis_lupus_dingo
ENSCGRG00000007698	Smn1	97	81.206	ENSCHIG00000015559	-	100	79.125	Capra_hircus
ENSCGRG00000007698	Smn1	99	85.121	ENSTSYG00000012058	-	100	84.828	Carlito_syrichta
ENSCGRG00000007698	Smn1	76	66.079	ENSCAPG00000011021	-	100	65.351	Cavia_aperea
ENSCGRG00000007698	Smn1	100	78.231	ENSCPOG00000036973	-	100	77.551	Cavia_porcellus
ENSCGRG00000007698	Smn1	99	78.157	ENSCPOG00000012328	-	99	77.474	Cavia_porcellus
ENSCGRG00000007698	Smn1	97	82.857	ENSCCAG00000018127	-	99	82.131	Cebus_capucinus
ENSCGRG00000007698	Smn1	97	83.986	ENSCATG00000037002	-	99	83.453	Cercocebus_atys
ENSCGRG00000007698	Smn1	100	75.839	ENSCLAG00000000284	-	100	75.839	Chinchilla_lanigera
ENSCGRG00000007698	Smn1	97	83.986	ENSCSAG00000015688	-	99	83.219	Chlorocebus_sabaeus
ENSCGRG00000007698	Smn1	86	72.222	ENSCHOG00000007346	-	67	80.357	Choloepus_hoffmanni
ENSCGRG00000007698	Smn1	98	57.586	ENSCPBG00000010968	-	99	56.667	Chrysemys_picta_bellii
ENSCGRG00000007698	Smn1	95	78.214	ENSCANG00000033324	-	95	78.214	Colobus_angolensis_palliatus
ENSCGRG00000007698	Smn1	97	83.571	ENSCANG00000038242	-	99	85.714	Colobus_angolensis_palliatus
ENSCGRG00000007698	Smn1	100	77.003	ENSCGRG00001016998	-	100	77.700	Cricetulus_griseus_chok1gshd
ENSCGRG00000007698	Smn1	100	100.000	ENSCGRG00001017959	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSCGRG00000007698	Smn1	93	50.000	ENSCSEG00000015227	smn1	97	49.822	Cynoglossus_semilaevis
ENSCGRG00000007698	Smn1	93	53.405	ENSCVAG00000007498	smn1	95	53.237	Cyprinodon_variegatus
ENSCGRG00000007698	Smn1	94	50.709	ENSDARG00000018494	smn1	96	51.799	Danio_rerio
ENSCGRG00000007698	Smn1	78	69.027	ENSDNOG00000045949	-	90	68.720	Dasypus_novemcinctus
ENSCGRG00000007698	Smn1	83	80.165	ENSDNOG00000007283	-	100	80.165	Dasypus_novemcinctus
ENSCGRG00000007698	Smn1	100	76.109	ENSDORG00000007082	Smn1	99	76.109	Dipodomys_ordii
ENSCGRG00000007698	Smn1	71	69.903	ENSETEG00000001406	-	93	68.586	Echinops_telfairi
ENSCGRG00000007698	Smn1	94	37.333	ENSEBUG00000011902	smn1	96	39.437	Eptatretus_burgeri
ENSCGRG00000007698	Smn1	90	77.947	ENSEASG00005018000	-	89	79.528	Equus_asinus_asinus
ENSCGRG00000007698	Smn1	100	83.162	ENSECAG00000015215	-	100	83.162	Equus_caballus
ENSCGRG00000007698	Smn1	86	78.088	ENSEEUG00000015777	-	100	78.088	Erinaceus_europaeus
ENSCGRG00000007698	Smn1	92	54.745	ENSELUG00000018067	smn1	94	53.114	Esox_lucius
ENSCGRG00000007698	Smn1	100	82.759	ENSFCAG00000028292	SMN	100	82.759	Felis_catus
ENSCGRG00000007698	Smn1	90	60.305	ENSFALG00000012320	-	91	59.387	Ficedula_albicollis
ENSCGRG00000007698	Smn1	100	77.181	ENSFDAG00000017683	-	100	77.181	Fukomys_damarensis
ENSCGRG00000007698	Smn1	61	54.494	ENSFHEG00000018508	smn1	96	51.636	Fundulus_heteroclitus
ENSCGRG00000007698	Smn1	96	46.763	ENSGMOG00000017279	smn1	96	45.290	Gadus_morhua
ENSCGRG00000007698	Smn1	93	59.108	ENSGALG00000002430	SMN	95	57.993	Gallus_gallus
ENSCGRG00000007698	Smn1	93	52.174	ENSGAFG00000009501	smn1	94	53.333	Gambusia_affinis
ENSCGRG00000007698	Smn1	93	50.735	ENSGACG00000010584	smn1	91	53.137	Gasterosteus_aculeatus
ENSCGRG00000007698	Smn1	98	58.419	ENSGAGG00000011374	-	99	57.045	Gopherus_agassizii
ENSCGRG00000007698	Smn1	95	36.765	ENSGAGG00000013639	-	56	48.485	Gopherus_agassizii
ENSCGRG00000007698	Smn1	95	72.101	ENSGGOG00000003872	-	100	72.202	Gorilla_gorilla
ENSCGRG00000007698	Smn1	63	82.514	ENSGGOG00000026704	-	91	81.443	Gorilla_gorilla
ENSCGRG00000007698	Smn1	92	50.562	ENSHBUG00000013987	smn1	94	53.759	Haplochromis_burtoni
ENSCGRG00000007698	Smn1	100	75.768	ENSHGLG00000001905	-	100	75.768	Heterocephalus_glaber_female
ENSCGRG00000007698	Smn1	99	79.655	ENSHGLG00000001018	-	98	79.655	Heterocephalus_glaber_female
ENSCGRG00000007698	Smn1	96	76.157	ENSHGLG00100018676	-	100	76.157	Heterocephalus_glaber_male
ENSCGRG00000007698	Smn1	99	79.655	ENSHGLG00100011252	-	98	79.655	Heterocephalus_glaber_male
ENSCGRG00000007698	Smn1	90	50.000	ENSHCOG00000017136	smn1	87	50.385	Hippocampus_comes
ENSCGRG00000007698	Smn1	92	52.030	ENSIPUG00000012580	smn1	86	50.357	Ictalurus_punctatus
ENSCGRG00000007698	Smn1	91	87.452	ENSSTOG00000012288	-	100	85.870	Ictidomys_tridecemlineatus
ENSCGRG00000007698	Smn1	60	63.006	ENSJJAG00000014853	-	89	63.218	Jaculus_jaculus
ENSCGRG00000007698	Smn1	93	52.747	ENSKMAG00000007239	smn1	96	52.107	Kryptolebias_marmoratus
ENSCGRG00000007698	Smn1	93	52.768	ENSLBEG00000022550	smn1	94	54.444	Labrus_bergylta
ENSCGRG00000007698	Smn1	93	36.331	ENSLACG00000009808	-	94	36.806	Latimeria_chalumnae
ENSCGRG00000007698	Smn1	92	53.933	ENSLOCG00000011339	smn1	94	52.206	Lepisosteus_oculatus
ENSCGRG00000007698	Smn1	100	80.952	ENSLAFG00000003425	-	96	80.952	Loxodonta_africana
ENSCGRG00000007698	Smn1	97	79.359	ENSMFAG00000008812	-	99	78.767	Macaca_fascicularis
ENSCGRG00000007698	Smn1	97	84.698	ENSMFAG00000031523	SMN1	99	85.714	Macaca_fascicularis
ENSCGRG00000007698	Smn1	97	78.648	ENSMMUG00000030594	-	99	78.082	Macaca_mulatta
ENSCGRG00000007698	Smn1	97	84.698	ENSMMUG00000020214	SMN1	99	85.714	Macaca_mulatta
ENSCGRG00000007698	Smn1	97	84.342	ENSMNEG00000035094	-	99	85.714	Macaca_nemestrina
ENSCGRG00000007698	Smn1	76	69.683	ENSMNEG00000036423	-	86	69.683	Macaca_nemestrina
ENSCGRG00000007698	Smn1	96	83.813	ENSMLEG00000041902	-	99	84.615	Mandrillus_leucophaeus
ENSCGRG00000007698	Smn1	92	52.015	ENSMAMG00000011034	smn1	94	52.963	Mastacembelus_armatus
ENSCGRG00000007698	Smn1	92	49.638	ENSMZEG00005013634	smn1	94	53.383	Maylandia_zebra
ENSCGRG00000007698	Smn1	68	54.082	ENSMGAG00000008889	-	95	52.551	Meleagris_gallopavo
ENSCGRG00000007698	Smn1	100	96.516	ENSMAUG00000010262	Smn1	100	96.516	Mesocricetus_auratus
ENSCGRG00000007698	Smn1	96	71.886	ENSMICG00000034708	-	99	84.091	Microcebus_murinus
ENSCGRG00000007698	Smn1	100	94.077	ENSMOCG00000017833	Smn1	100	94.077	Microtus_ochrogaster
ENSCGRG00000007698	Smn1	92	47.407	ENSMMOG00000005504	smn1	96	50.183	Mola_mola
ENSCGRG00000007698	Smn1	100	65.068	ENSMODG00000001436	-	97	65.734	Monodelphis_domestica
ENSCGRG00000007698	Smn1	92	51.852	ENSMALG00000008025	smn1	94	52.963	Monopterus_albus
ENSCGRG00000007698	Smn1	100	94.792	MGP_CAROLIEiJ_G0018836	Smn1	100	95.139	Mus_caroli
ENSCGRG00000007698	Smn1	100	94.792	ENSMUSG00000021645	Smn1	100	95.139	Mus_musculus
ENSCGRG00000007698	Smn1	100	91.289	MGP_PahariEiJ_G0015911	Smn1	100	92.683	Mus_pahari
ENSCGRG00000007698	Smn1	100	94.097	MGP_SPRETEiJ_G0019718	Smn1	100	94.444	Mus_spretus
ENSCGRG00000007698	Smn1	95	86.232	ENSMPUG00000014470	-	98	86.232	Mustela_putorius_furo
ENSCGRG00000007698	Smn1	97	84.083	ENSMLUG00000010603	-	95	83.165	Myotis_lucifugus
ENSCGRG00000007698	Smn1	100	88.235	ENSNGAG00000019833	Smn1	100	88.235	Nannospalax_galili
ENSCGRG00000007698	Smn1	92	49.638	ENSNBRG00000023000	smn1	94	53.731	Neolamprologus_brichardi
ENSCGRG00000007698	Smn1	99	82.534	ENSNLEG00000004454	-	99	82.734	Nomascus_leucogenys
ENSCGRG00000007698	Smn1	78	61.674	ENSMEUG00000011393	-	99	61.674	Notamacropus_eugenii
ENSCGRG00000007698	Smn1	86	77.075	ENSOPRG00000002015	-	100	77.866	Ochotona_princeps
ENSCGRG00000007698	Smn1	95	79.273	ENSODEG00000015976	-	97	79.273	Octodon_degus
ENSCGRG00000007698	Smn1	93	49.640	ENSONIG00000011799	smn1	95	52.330	Oreochromis_niloticus
ENSCGRG00000007698	Smn1	95	62.816	ENSOANG00000001626	-	99	63.158	Ornithorhynchus_anatinus
ENSCGRG00000007698	Smn1	99	75.850	ENSOCUG00000026649	-	99	78.571	Oryctolagus_cuniculus
ENSCGRG00000007698	Smn1	100	80.756	ENSOCUG00000017097	-	99	80.756	Oryctolagus_cuniculus
ENSCGRG00000007698	Smn1	99	74.744	ENSOCUG00000025183	-	99	74.744	Oryctolagus_cuniculus
ENSCGRG00000007698	Smn1	93	50.558	ENSORLG00000010552	smn1	94	53.903	Oryzias_latipes
ENSCGRG00000007698	Smn1	93	52.985	ENSORLG00020007936	smn1	93	52.809	Oryzias_latipes_hni
ENSCGRG00000007698	Smn1	93	50.186	ENSORLG00015022425	smn1	94	52.313	Oryzias_latipes_hsok
ENSCGRG00000007698	Smn1	93	49.813	ENSOMEG00000007824	smn1	94	54.444	Oryzias_melastigma
ENSCGRG00000007698	Smn1	92	73.162	ENSOGAG00000031414	-	100	71.528	Otolemur_garnettii
ENSCGRG00000007698	Smn1	95	78.545	ENSOARG00000005425	-	100	78.182	Ovis_aries
ENSCGRG00000007698	Smn1	97	83.630	ENSPPAG00000036640	-	95	88.000	Pan_paniscus
ENSCGRG00000007698	Smn1	100	83.103	ENSPPRG00000005575	-	100	83.103	Panthera_pardus
ENSCGRG00000007698	Smn1	100	83.162	ENSPTIG00000007745	-	100	83.162	Panthera_tigris_altaica
ENSCGRG00000007698	Smn1	97	82.746	ENSPTRG00000016955	-	95	88.000	Pan_troglodytes
ENSCGRG00000007698	Smn1	95	79.422	ENSPANG00000000253	-	98	79.167	Papio_anubis
ENSCGRG00000007698	Smn1	99	83.562	ENSPANG00000013601	-	99	84.615	Papio_anubis
ENSCGRG00000007698	Smn1	92	49.624	ENSPKIG00000011096	smn1	97	52.015	Paramormyrops_kingsleyae
ENSCGRG00000007698	Smn1	93	54.930	ENSPSIG00000014787	-	90	53.357	Pelodiscus_sinensis
ENSCGRG00000007698	Smn1	93	45.583	ENSPMGG00000012285	smn1	94	48.276	Periophthalmus_magnuspinnatus
ENSCGRG00000007698	Smn1	97	40.972	ENSPMAG00000005004	smn1	96	41.438	Petromyzon_marinus
ENSCGRG00000007698	Smn1	98	66.783	ENSPCIG00000025764	-	99	66.783	Phascolarctos_cinereus
ENSCGRG00000007698	Smn1	93	53.846	ENSPFOG00000007786	smn1	94	53.704	Poecilia_formosa
ENSCGRG00000007698	Smn1	93	54.212	ENSPLAG00000012071	smn1	94	54.074	Poecilia_latipinna
ENSCGRG00000007698	Smn1	93	53.846	ENSPMEG00000017085	smn1	94	53.704	Poecilia_mexicana
ENSCGRG00000007698	Smn1	93	53.091	ENSPREG00000005824	smn1	94	54.444	Poecilia_reticulata
ENSCGRG00000007698	Smn1	92	82.397	ENSPPYG00000015533	-	97	82.397	Pongo_abelii
ENSCGRG00000007698	Smn1	86	55.823	ENSPPYG00000019189	-	99	55.823	Pongo_abelii
ENSCGRG00000007698	Smn1	92	78.967	ENSPCAG00000004187	-	100	78.309	Procavia_capensis
ENSCGRG00000007698	Smn1	90	65.660	ENSPCOG00000022307	-	100	67.170	Propithecus_coquereli
ENSCGRG00000007698	Smn1	97	85.000	ENSPVAG00000005977	-	100	83.618	Pteropus_vampyrus
ENSCGRG00000007698	Smn1	92	49.638	ENSPNYG00000014148	smn1	94	53.731	Pundamilia_nyererei
ENSCGRG00000007698	Smn1	97	47.931	ENSPNAG00000014007	smn1	86	50.352	Pygocentrus_nattereri
ENSCGRG00000007698	Smn1	100	93.403	ENSRNOG00000018067	Smn1	100	93.403	Rattus_norvegicus
ENSCGRG00000007698	Smn1	94	71.691	ENSRBIG00000036775	-	92	71.691	Rhinopithecus_bieti
ENSCGRG00000007698	Smn1	97	83.986	ENSRBIG00000037052	-	99	85.714	Rhinopithecus_bieti
ENSCGRG00000007698	Smn1	97	83.986	ENSRROG00000039399	-	99	85.714	Rhinopithecus_roxellana
ENSCGRG00000007698	Smn1	98	71.228	ENSRROG00000031088	-	97	71.228	Rhinopithecus_roxellana
ENSCGRG00000007698	Smn1	84	76.000	ENSSBOG00000020112	-	87	76.400	Saimiri_boliviensis_boliviensis
ENSCGRG00000007698	Smn1	97	80.000	ENSSBOG00000011665	-	99	80.412	Saimiri_boliviensis_boliviensis
ENSCGRG00000007698	Smn1	100	65.753	ENSSHAG00000001499	-	100	64.130	Sarcophilus_harrisii
ENSCGRG00000007698	Smn1	93	53.285	ENSSFOG00015015507	smn1	94	53.285	Scleropages_formosus
ENSCGRG00000007698	Smn1	93	48.736	ENSSMAG00000007922	smn1	94	50.545	Scophthalmus_maximus
ENSCGRG00000007698	Smn1	93	51.825	ENSSDUG00000018533	smn1	94	52.222	Seriola_dumerili
ENSCGRG00000007698	Smn1	93	52.190	ENSSLDG00000021135	smn1	94	52.593	Seriola_lalandi_dorsalis
ENSCGRG00000007698	Smn1	96	60.215	ENSSPUG00000000373	-	95	60.432	Sphenodon_punctatus
ENSCGRG00000007698	Smn1	93	51.636	ENSSPAG00000004345	smn1	94	52.364	Stegastes_partitus
ENSCGRG00000007698	Smn1	74	49.289	ENSSSCG00000033865	-	92	55.769	Sus_scrofa
ENSCGRG00000007698	Smn1	97	81.915	ENSSSCG00000016970	-	100	82.935	Sus_scrofa
ENSCGRG00000007698	Smn1	97	62.500	ENSSSCG00000029127	-	96	63.380	Sus_scrofa
ENSCGRG00000007698	Smn1	94	57.914	ENSTGUG00000001548	-	100	54.545	Taeniopygia_guttata
ENSCGRG00000007698	Smn1	93	47.619	ENSTRUG00000000736	smn	95	48.507	Takifugu_rubripes
ENSCGRG00000007698	Smn1	93	49.462	ENSTNIG00000009892	smn1	95	50.179	Tetraodon_nigroviridis
ENSCGRG00000007698	Smn1	66	84.896	ENSTBEG00000002399	-	93	84.896	Tupaia_belangeri
ENSCGRG00000007698	Smn1	97	80.142	ENSTTRG00000005080	-	100	78.983	Tursiops_truncatus
ENSCGRG00000007698	Smn1	63	85.326	ENSUAMG00000024947	-	70	84.896	Ursus_americanus
ENSCGRG00000007698	Smn1	97	85.461	ENSUMAG00000007842	-	74	85.172	Ursus_maritimus
ENSCGRG00000007698	Smn1	92	72.932	ENSVPAG00000009887	-	100	71.942	Vicugna_pacos
ENSCGRG00000007698	Smn1	100	85.172	ENSVVUG00000006934	-	100	85.172	Vulpes_vulpes
ENSCGRG00000007698	Smn1	95	54.448	ENSXETG00000018189	smn2	96	54.325	Xenopus_tropicalis
ENSCGRG00000007698	Smn1	100	37.049	ENSXETG00000004912	-	78	63.934	Xenopus_tropicalis
ENSCGRG00000007698	Smn1	93	52.158	ENSXMAG00000001521	smn1	95	53.137	Xiphophorus_maculatus