EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCGRG00000007782 (Gene tree)
Gene ID: -
Gene Symbol: Smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cricetulus_griseus_crigri
Status: putative
Strand: Plus strand
Length: 224153 bases
Position: chrJH000768.1:565301-789453
Accession: 100767685
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCGRP00000010605	EST1	PF10374.9	7.4e-15	1	1
ENSCGRP00000010605	EST1_DNA_bind	PF10373.9	1.5e-40	1	1
ENSCGRP00000010605	PIN_4	PF13638.6	5.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCGRT00000010778	-	3999	XM_016978027	ENSCGRP00000010605	1332 (aa)	XP_016833516	-

Gene Model

Click here to download ENSCGRG00000007782's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCGRG00000007782's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCGRG00000007782	Smg6	100	84.222	ENSG00000070366	SMG6	88	96.154	Homo_sapiens
ENSCGRG00000007782	Smg6	72	54.212	ENSAPOG00000019448	smg6	74	50.472	Acanthochromis_polyacanthus
ENSCGRG00000007782	Smg6	100	85.231	ENSAMEG00000007632	SMG6	98	85.086	Ailuropoda_melanoleuca
ENSCGRG00000007782	Smg6	74	54.945	ENSACIG00000012997	smg6	98	45.364	Amphilophus_citrinellus
ENSCGRG00000007782	Smg6	72	54.270	ENSAOCG00000002630	smg6	74	50.353	Amphiprion_ocellaris
ENSCGRG00000007782	Smg6	72	54.270	ENSAPEG00000019101	smg6	74	50.431	Amphiprion_percula
ENSCGRG00000007782	Smg6	84	51.334	ENSATEG00000006483	smg6	73	50.310	Anabas_testudineus
ENSCGRG00000007782	Smg6	87	53.312	ENSACAG00000011783	SMG6	96	54.947	Anolis_carolinensis
ENSCGRG00000007782	Smg6	100	84.438	ENSANAG00000035760	SMG6	98	84.294	Aotus_nancymaae
ENSCGRG00000007782	Smg6	72	54.159	ENSACLG00000005288	smg6	80	50.471	Astatotilapia_calliptera
ENSCGRG00000007782	Smg6	73	56.196	ENSAMXG00000017326	smg6	98	46.723	Astyanax_mexicanus
ENSCGRG00000007782	Smg6	99	85.776	ENSBTAG00000000267	SMG6	98	85.632	Bos_taurus
ENSCGRG00000007782	Smg6	100	84.582	ENSCJAG00000001820	SMG6	98	84.438	Callithrix_jacchus
ENSCGRG00000007782	Smg6	99	84.982	ENSCAFG00000019260	SMG6	98	84.838	Canis_familiaris
ENSCGRG00000007782	Smg6	99	84.982	ENSCAFG00020009770	SMG6	98	84.838	Canis_lupus_dingo
ENSCGRG00000007782	Smg6	99	85.271	ENSCHIG00000021998	SMG6	98	85.126	Capra_hircus
ENSCGRG00000007782	Smg6	100	84.654	ENSTSYG00000003406	SMG6	98	84.510	Carlito_syrichta
ENSCGRG00000007782	Smg6	100	70.870	ENSCAPG00000016197	SMG6	96	79.790	Cavia_aperea
ENSCGRG00000007782	Smg6	100	84.377	ENSCPOG00000014878	SMG6	98	84.377	Cavia_porcellus
ENSCGRG00000007782	Smg6	100	84.582	ENSCCAG00000035801	SMG6	98	84.438	Cebus_capucinus
ENSCGRG00000007782	Smg6	100	84.726	ENSCATG00000031956	SMG6	98	84.582	Cercocebus_atys
ENSCGRG00000007782	Smg6	100	86.095	ENSCLAG00000006748	SMG6	100	85.951	Chinchilla_lanigera
ENSCGRG00000007782	Smg6	100	85.231	ENSCSAG00000013800	SMG6	98	85.086	Chlorocebus_sabaeus
ENSCGRG00000007782	Smg6	50	98.507	ENSCHOG00000005024	-	60	98.507	Choloepus_hoffmanni
ENSCGRG00000007782	Smg6	100	66.501	ENSCPBG00000020369	SMG6	98	67.070	Chrysemys_picta_bellii
ENSCGRG00000007782	Smg6	100	84.870	ENSCANG00000031764	SMG6	99	84.726	Colobus_angolensis_palliatus
ENSCGRG00000007782	Smg6	56	99.060	ENSCGRG00001019595	Smg6	96	99.060	Cricetulus_griseus_chok1gshd
ENSCGRG00000007782	Smg6	89	49.057	ENSCSEG00000012757	smg6	83	48.604	Cynoglossus_semilaevis
ENSCGRG00000007782	Smg6	72	52.593	ENSCVAG00000012789	smg6	74	48.281	Cyprinodon_variegatus
ENSCGRG00000007782	Smg6	99	46.725	ENSDARG00000100481	smg6	98	46.513	Danio_rerio
ENSCGRG00000007782	Smg6	100	84.654	ENSDNOG00000048283	SMG6	98	84.438	Dasypus_novemcinctus
ENSCGRG00000007782	Smg6	100	83.697	ENSDORG00000016614	Smg6	98	83.552	Dipodomys_ordii
ENSCGRG00000007782	Smg6	87	100.000	ENSETEG00000016790	SMG6	84	100.000	Echinops_telfairi
ENSCGRG00000007782	Smg6	68	45.862	ENSEBUG00000005059	smg6	65	50.000	Eptatretus_burgeri
ENSCGRG00000007782	Smg6	99	85.756	ENSEASG00005009318	SMG6	97	85.611	Equus_asinus_asinus
ENSCGRG00000007782	Smg6	99	85.756	ENSECAG00000006519	SMG6	97	85.611	Equus_caballus
ENSCGRG00000007782	Smg6	96	83.480	ENSEEUG00000003493	SMG6	87	93.182	Erinaceus_europaeus
ENSCGRG00000007782	Smg6	72	54.613	ENSELUG00000005934	smg6	67	51.060	Esox_lucius
ENSCGRG00000007782	Smg6	99	85.921	ENSFCAG00000028817	SMG6	98	85.776	Felis_catus
ENSCGRG00000007782	Smg6	100	65.788	ENSFALG00000006538	SMG6	100	66.001	Ficedula_albicollis
ENSCGRG00000007782	Smg6	100	85.508	ENSFDAG00000015106	SMG6	98	85.364	Fukomys_damarensis
ENSCGRG00000007782	Smg6	84	48.906	ENSFHEG00000013282	smg6	74	48.865	Fundulus_heteroclitus
ENSCGRG00000007782	Smg6	53	64.789	ENSGMOG00000019077	smg6	58	64.789	Gadus_morhua
ENSCGRG00000007782	Smg6	100	66.168	ENSGALG00000003108	SMG6	96	66.097	Gallus_gallus
ENSCGRG00000007782	Smg6	80	50.582	ENSGAFG00000000379	smg6	74	49.171	Gambusia_affinis
ENSCGRG00000007782	Smg6	92	49.259	ENSGACG00000020521	smg6	99	49.079	Gasterosteus_aculeatus
ENSCGRG00000007782	Smg6	100	66.074	ENSGAGG00000025617	SMG6	100	66.643	Gopherus_agassizii
ENSCGRG00000007782	Smg6	100	85.159	ENSGGOG00000017156	SMG6	98	85.014	Gorilla_gorilla
ENSCGRG00000007782	Smg6	89	49.095	ENSHBUG00000021311	smg6	74	50.825	Haplochromis_burtoni
ENSCGRG00000007782	Smg6	100	84.748	ENSHGLG00000012882	SMG6	98	84.604	Heterocephalus_glaber_female
ENSCGRG00000007782	Smg6	100	84.820	ENSHGLG00100017815	SMG6	98	84.676	Heterocephalus_glaber_male
ENSCGRG00000007782	Smg6	72	53.104	ENSHCOG00000008761	smg6	97	47.808	Hippocampus_comes
ENSCGRG00000007782	Smg6	85	51.079	ENSIPUG00000012493	smg6	75	50.118	Ictalurus_punctatus
ENSCGRG00000007782	Smg6	100	86.671	ENSSTOG00000028127	SMG6	98	86.527	Ictidomys_tridecemlineatus
ENSCGRG00000007782	Smg6	80	87.144	ENSJJAG00000015367	Smg6	93	85.027	Jaculus_jaculus
ENSCGRG00000007782	Smg6	87	49.508	ENSKMAG00000000279	smg6	75	49.648	Kryptolebias_marmoratus
ENSCGRG00000007782	Smg6	91	47.285	ENSLBEG00000002184	smg6	73	48.908	Labrus_bergylta
ENSCGRG00000007782	Smg6	58	56.196	ENSLACG00000000806	-	98	57.650	Latimeria_chalumnae
ENSCGRG00000007782	Smg6	100	84.150	ENSLAFG00000001261	SMG6	98	84.006	Loxodonta_africana
ENSCGRG00000007782	Smg6	100	85.086	ENSMFAG00000003394	SMG6	98	84.942	Macaca_fascicularis
ENSCGRG00000007782	Smg6	100	85.014	ENSMMUG00000023161	SMG6	98	84.870	Macaca_mulatta
ENSCGRG00000007782	Smg6	100	80.794	ENSMNEG00000044592	SMG6	98	80.650	Macaca_nemestrina
ENSCGRG00000007782	Smg6	99	83.685	ENSMLEG00000029353	SMG6	99	86.752	Mandrillus_leucophaeus
ENSCGRG00000007782	Smg6	86	50.696	ENSMAMG00000020119	smg6	79	50.712	Mastacembelus_armatus
ENSCGRG00000007782	Smg6	72	54.344	ENSMZEG00005024736	smg6	74	50.630	Maylandia_zebra
ENSCGRG00000007782	Smg6	73	63.717	ENSMGAG00000005401	-	91	65.436	Meleagris_gallopavo
ENSCGRG00000007782	Smg6	100	86.671	ENSMICG00000012913	SMG6	98	86.527	Microcebus_murinus
ENSCGRG00000007782	Smg6	92	46.788	ENSMMOG00000010883	smg6	77	51.334	Mola_mola
ENSCGRG00000007782	Smg6	100	78.864	ENSMODG00000010622	SMG6	98	78.720	Monodelphis_domestica
ENSCGRG00000007782	Smg6	84	50.543	ENSMALG00000001106	smg6	73	50.895	Monopterus_albus
ENSCGRG00000007782	Smg6	100	88.681	MGP_CAROLIEiJ_G0016729	Smg6	98	93.084	Mus_caroli
ENSCGRG00000007782	Smg6	100	88.753	ENSMUSG00000038290	Smg6	97	93.084	Mus_musculus
ENSCGRG00000007782	Smg6	100	88.320	MGP_PahariEiJ_G0017866	Smg6	98	93.084	Mus_pahari
ENSCGRG00000007782	Smg6	100	88.753	MGP_SPRETEiJ_G0017572	Smg6	98	93.372	Mus_spretus
ENSCGRG00000007782	Smg6	99	85.126	ENSMPUG00000013046	SMG6	98	84.910	Mustela_putorius_furo
ENSCGRG00000007782	Smg6	99	85.054	ENSMLUG00000005739	SMG6	98	84.910	Myotis_lucifugus
ENSCGRG00000007782	Smg6	100	87.094	ENSNGAG00000007287	Smg6	99	86.950	Nannospalax_galili
ENSCGRG00000007782	Smg6	91	47.832	ENSNBRG00000009511	smg6	80	50.394	Neolamprologus_brichardi
ENSCGRG00000007782	Smg6	100	84.798	ENSNLEG00000017171	SMG6	99	84.654	Nomascus_leucogenys
ENSCGRG00000007782	Smg6	100	75.557	ENSMEUG00000015804	SMG6	99	75.341	Notamacropus_eugenii
ENSCGRG00000007782	Smg6	62	90.045	ENSOPRG00000000579	SMG6	83	90.431	Ochotona_princeps
ENSCGRG00000007782	Smg6	100	82.122	ENSODEG00000008038	SMG6	98	81.653	Octodon_degus
ENSCGRG00000007782	Smg6	99	47.811	ENSONIG00000005594	smg6	97	48.238	Oreochromis_niloticus
ENSCGRG00000007782	Smg6	100	85.601	ENSOCUG00000013018	SMG6	98	85.457	Oryctolagus_cuniculus
ENSCGRG00000007782	Smg6	90	47.759	ENSORLG00000003317	smg6	74	49.961	Oryzias_latipes
ENSCGRG00000007782	Smg6	90	47.791	ENSORLG00020015343	smg6	74	49.604	Oryzias_latipes_hni
ENSCGRG00000007782	Smg6	90	47.832	ENSORLG00015020454	smg6	74	49.961	Oryzias_latipes_hsok
ENSCGRG00000007782	Smg6	89	47.487	ENSOMEG00000010838	smg6	75	49.444	Oryzias_melastigma
ENSCGRG00000007782	Smg6	100	85.673	ENSOGAG00000004483	SMG6	98	85.529	Otolemur_garnettii
ENSCGRG00000007782	Smg6	100	84.870	ENSOARG00000015076	SMG6	100	84.910	Ovis_aries
ENSCGRG00000007782	Smg6	100	85.159	ENSPPAG00000043296	SMG6	98	85.014	Pan_paniscus
ENSCGRG00000007782	Smg6	99	85.993	ENSPPRG00000014581	SMG6	98	85.848	Panthera_pardus
ENSCGRG00000007782	Smg6	99	85.993	ENSPTIG00000008925	SMG6	98	85.848	Panthera_tigris_altaica
ENSCGRG00000007782	Smg6	100	85.159	ENSPTRG00000008544	SMG6	98	85.014	Pan_troglodytes
ENSCGRG00000007782	Smg6	100	84.870	ENSPANG00000024588	SMG6	98	84.726	Papio_anubis
ENSCGRG00000007782	Smg6	90	64.101	ENSPSIG00000006660	SMG6	96	64.179	Pelodiscus_sinensis
ENSCGRG00000007782	Smg6	97	53.273	ENSPMGG00000000844	smg6	98	45.970	Periophthalmus_magnuspinnatus
ENSCGRG00000007782	Smg6	100	90.332	ENSPEMG00000020707	Smg6	98	90.188	Peromyscus_maniculatus_bairdii
ENSCGRG00000007782	Smg6	99	47.862	ENSPFOG00000012035	smg6	97	47.026	Poecilia_formosa
ENSCGRG00000007782	Smg6	77	51.718	ENSPLAG00000017660	smg6	74	49.364	Poecilia_latipinna
ENSCGRG00000007782	Smg6	77	51.757	ENSPMEG00000000258	smg6	74	49.565	Poecilia_mexicana
ENSCGRG00000007782	Smg6	84	50.000	ENSPREG00000010066	smg6	74	49.565	Poecilia_reticulata
ENSCGRG00000007782	Smg6	100	80.432	ENSPPYG00000007790	SMG6	98	80.288	Pongo_abelii
ENSCGRG00000007782	Smg6	96	84.324	ENSPCAG00000000552	SMG6	92	84.350	Procavia_capensis
ENSCGRG00000007782	Smg6	100	86.527	ENSPCOG00000020925	SMG6	98	86.383	Propithecus_coquereli
ENSCGRG00000007782	Smg6	85	81.329	ENSPVAG00000002159	SMG6	84	81.161	Pteropus_vampyrus
ENSCGRG00000007782	Smg6	91	49.015	ENSPNYG00000024151	smg6	79	52.323	Pundamilia_nyererei
ENSCGRG00000007782	Smg6	89	47.216	ENSPNAG00000015480	smg6	77	48.006	Pygocentrus_nattereri
ENSCGRG00000007782	Smg6	100	89.041	ENSRNOG00000003041	Smg6	97	94.236	Rattus_norvegicus
ENSCGRG00000007782	Smg6	100	85.014	ENSRBIG00000024746	SMG6	98	84.870	Rhinopithecus_bieti
ENSCGRG00000007782	Smg6	100	85.086	ENSRROG00000030423	SMG6	100	84.942	Rhinopithecus_roxellana
ENSCGRG00000007782	Smg6	100	84.510	ENSSBOG00000022518	SMG6	98	82.709	Saimiri_boliviensis_boliviensis
ENSCGRG00000007782	Smg6	100	78.520	ENSSHAG00000010045	SMG6	98	78.289	Sarcophilus_harrisii
ENSCGRG00000007782	Smg6	74	56.250	ENSSFOG00015005436	smg6	70	52.310	Scleropages_formosus
ENSCGRG00000007782	Smg6	88	49.370	ENSSMAG00000019777	smg6	73	49.650	Scophthalmus_maximus
ENSCGRG00000007782	Smg6	90	48.653	ENSSDUG00000016412	smg6	74	50.428	Seriola_dumerili
ENSCGRG00000007782	Smg6	87	47.888	ENSSLDG00000020747	smg6	83	47.491	Seriola_lalandi_dorsalis
ENSCGRG00000007782	Smg6	99	64.475	ENSSPUG00000007152	SMG6	98	63.404	Sphenodon_punctatus
ENSCGRG00000007782	Smg6	99	84.765	ENSSSCG00000017826	SMG6	99	83.954	Sus_scrofa
ENSCGRG00000007782	Smg6	100	65.780	ENSTGUG00000005836	SMG6	98	65.852	Taeniopygia_guttata
ENSCGRG00000007782	Smg6	91	48.498	ENSTRUG00000000358	smg6	81	50.200	Takifugu_rubripes
ENSCGRG00000007782	Smg6	99	46.242	ENSTNIG00000016164	smg6	98	45.646	Tetraodon_nigroviridis
ENSCGRG00000007782	Smg6	97	87.435	ENSTBEG00000011424	SMG6	98	84.043	Tupaia_belangeri
ENSCGRG00000007782	Smg6	90	85.690	ENSTTRG00000001175	SMG6	89	85.690	Tursiops_truncatus
ENSCGRG00000007782	Smg6	99	85.519	ENSUAMG00000025152	SMG6	100	85.303	Ursus_americanus
ENSCGRG00000007782	Smg6	99	85.704	ENSUMAG00000009306	SMG6	100	85.560	Ursus_maritimus
ENSCGRG00000007782	Smg6	85	92.593	ENSVPAG00000000225	SMG6	85	92.593	Vicugna_pacos
ENSCGRG00000007782	Smg6	99	84.693	ENSVVUG00000021727	SMG6	98	84.549	Vulpes_vulpes
ENSCGRG00000007782	Smg6	100	55.375	ENSXETG00000023799	SMG6	99	54.488	Xenopus_tropicalis
ENSCGRG00000007782	Smg6	84	50.362	ENSXCOG00000009867	smg6	74	49.839	Xiphophorus_couchianus
ENSCGRG00000007782	Smg6	84	49.961	ENSXMAG00000010321	smg6	74	49.406	Xiphophorus_maculatus